Knut Reinert

114 papers A* 1A 1B 9C 9Misc 1Journal 69Unranked 19
YearRankTypeTitle / Venue / Authors
2026 J jnl
DREAM-Stellar: parallel and space efficient exact local alignment.
BMC Bioinform.
Evelin Aasna, Simon Gottlieb, Marcel Ehrhardt, Knut Reinert
2025 B conf
Domain-Specific Data Compression for Nextflow with COMET-FLOW.
IEEE Big Data
Ninon De Mecquenem, Simon Bosse, Vasilis Bountris, Fabian Lehmann, Somayeh Mohammadi, Pauline Karega, Knut Reinert, Ulf Leser
2025 J jnl
Engineering rank queries on bit vectors and strings.
Algorithms Mol. Biol.
Simon Gottlieb, Knut Reinert
2025 — conf
Search Schemes for Approximate Pattern Matching: An Overview.
The Expanding World of Compressed Data
Lore Depuydt, Jan Fostier, Simon Gottlieb, Gregory Kucherov, Knut Reinert, Luca Renders
2024 J jnl
A simple refined DNA minimizer operator enables 2-fold faster computation.
Bioinform.
Chenxu Pan, Knut Reinert
2024 B conf
CuttleFlow: Infrastructure-Specific Workflow Adaption for Improved Reusability.
e-Science
Ninon De Mecquenem, Simon Bosse, Vasilis Bountris, Somayeh Mohammadi, Knut Reinert, Ulf Leser
2024 B conf
Decoil: Reconstructing Extrachromosomal DNA Structural Heterogeneity from Long-Read Sequencing Data.
RECOMB
Madalina Giurgiu, Nadine Wittstruck, Elias Rodriguez-Fos, Rocío Chamorro González, Lotte Brückner, Annabell Krienelke-Szymansky, Konstantin Helmsauer, Anne Hartebrodt, Philipp Euskirchen, Richard P. Koche, Kerstin Haase, Knut Reinert, Anton G. Henssen
2024 J jnl
Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences.
Bioinform.
Hannes Hauswedell, Sara Hetzel, Simon Gottlieb, Helene Kretzmer, Alexander Meissner, Knut Reinert
2024 — conf
Optimizing Job/Task Granularity for Metagenomic Workflows in Heterogeneous Cluster Infrastructures.
EDBT/ICDT Workshops
Somayeh Mohammadi, Latif Pourkarimi, Manuel Zschäbitz, Tristan Aretz, Ninon De Mecquenem, Ulf Leser, Knut Reinert
2023 J jnl
A mathematical programming approach for resource allocation of data analysis workflows on heterogeneous clusters.
J. Supercomput.
Somayeh Mohammadi, Latif Pourkarimi, Felix Droop, Ninon De Mecquenem, Ulf Leser, Knut Reinert
2023 J jnl
A multi-view latent variable model reveals cellular heterogeneity in complex tissues for paired multimodal single-cell data.
Bioinform.
Yuwei Wang, Bin Lian, Haohui Zhang, Yuanke Zhong, Jie He, Fashuai Wu, Knut Reinert, Xuequn Shang, Hui Yang, Jialu Hu
2023 J jnl
Linear: a framework to enable existing software to resolve structural variants in long reads with flexible and efficient alignment-free statistical models.
Briefings Bioinform.
Chenxu Pan, René Rahn, David Heller, Knut Reinert
2023 J jnl
Mistle: bringing spectral library predictions to metaproteomics with an efficient search index.
Bioinform.
Yannek Nowatzky, Philipp Benner, Knut Reinert, Thilo Muth
2022 A conf
Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA.
FPGA
Marius Knaust, Enrico Seiler, Knut Reinert, Thomas Steinke
2022 J jnl
LaRA 2: parallel and vectorized program for sequence-structure alignment of RNA sequences.
BMC Bioinform.
Jörg Winkler, Gianvito Urgese, Elisa Ficarra, Knut Reinert
2022 J jnl
Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments.
Bioinform.
Mitra Darvish, Enrico Seiler, Svenja Mehringer, René Rahn, Knut Reinert
2021 J jnl
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Briefings Bioinform.
Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz
2021 — conf
PriSeT: efficient
BCB
Marie Hoffmann, Michael T. Monaghan, Knut Reinert
2021 J jnl
RLM: fast and simplified extraction of read-level methylation metrics from bisulfite sequencing data.
Bioinform.
Sara Hetzel, Pay Giesselmann, Knut Reinert, Alexander Meissner, Helene Kretzmer
2021 J jnl
SCORE: Smart Consensus Of RNA Expression - a consensus tool for detecting differentially expressed genes in bacteria.
Bioinform.
Silver A. Wolf, Lennard Epping, Sandro Andreotti, Knut Reinert, Torsten Semmler
2021 J jnl
The Collaborative Research Center FONDA.
Datenbank-Spektrum
Ulf Leser, Marcus Hilbrich, Claudia Draxl, Peter Eisert, Lars Grunske, Patrick Hostert, Dagmar Kainmüller, Odej Kao, Birte Kehr, Timo Kehrer, Christoph Koch, Volker Markl, Henning Meyerhenke, Tilmann Rabl, Alexander Reinefeld, Knut Reinert, Kerstin Ritter, Björn Scheuermann, Florian Schintke, Nicole Schweikardt, Matthias Weidlich
2020 J jnl
GenMap: ultra-fast computation of genome mappability.
Bioinform.
Christopher Pockrandt, Mai Alzamel, Costas S. Iliopoulos, Knut Reinert
2020 J jnl
Portability of Scientific Workflows in NGS Data Analysis: A Case Study.
CoRR
Christopher Schiefer, Marc Bux, Jörgen Brandt, Clemens Messerschmidt, Knut Reinert, Dieter Beule, Ulf Leser
2020 J jnl
Ranbow: A fast and accurate method for polyploid haplotype reconstruction.
PLoS Comput. Biol.
M-Hossein Moeinzadeh, Jun Yang, Evgeny Muzychenko, Giuseppe Gallone, David Heller, Knut Reinert, Stefan A. Haas, Martin Vingron
2020 J jnl
ganon: precise metagenomics classification against large and up-to-date sets of reference sequences.
Bioinform.
Vitor Piro, Temesgen Hailemariam Dadi, Enrico Seiler, Knut Reinert, Bernhard Y. Renard
2018 J jnl
DREAM-Yara: an exact read mapper for very large databases with short update time.
Bioinform.
Temesgen Hailemariam Dadi, Enrico Siragusa, Vitor Piro, Andreas Andrusch, Enrico Seiler, Bernhard Y. Renard, Knut Reinert
2018 J jnl
Generic accelerated sequence alignment in SeqAn using vectorization and multi-threading.
Bioinform.
René Rahn, Stefan Budach, Pascal Costanza, Marcel Ehrhardt, Jonny Hancox, Knut Reinert
2017 C ed.
17th International Workshop on Algorithms in Bioinformatics, WABI 2017, Boston, MA, USA, August 21-23, 2017
WABI
Russell Schwartz, Knut Reinert
2017 B conf
EPR-Dictionaries: A Practical and Fast Data Structure for Constant Time Searches in Unidirectional and Bidirectional FM Indices.
RECOMB
Christopher Pockrandt, Marcel Ehrhardt, Knut Reinert
2017 J jnl
FAMOUS: Fast Approximate string Matching using OptimUm search Schemes.
CoRR
Kiavash Kianfar, Christopher Pockrandt, Bahman Torkamandi, Haochen Luo, Knut Reinert
2017 J jnl
Flexbar 3.0 - SIMD and multicore parallelization.
Bioinform.
Johannes T. Roehr, Christoph Dieterich, Knut Reinert
2017 C conf
Vaquita: Fast and Accurate Identification of Structural Variation Using Combined Evidence.
WABI
Jongkyu Kim, Knut Reinert
2016 J jnl
Constant-time and space-efficient unidirectional and bidirectional FM-indices using EPR-dictionaries.
CoRR
Christopher Pockrandt, Marcel Ehrhardt, Knut Reinert
2016 J jnl
From the desktop to the grid: scalable bioinformatics via workflow conversion.
BMC Bioinform.
Luis de la Garza, Johannes Veit, András Szolek, Marc Röttig, Stephan Aiche, Sandra Gesing, Knut Reinert, Oliver Kohlbacher
2016 J jnl
Next Generation Sequencing (Dagstuhl Seminar 16351).
Dagstuhl Reports
Gene Myers, Mihai Pop, Knut Reinert, Tandy J. Warnow
2015 B conf
CIDANE: Comprehensive Isoform Discovery and Abundance Estimation.
RECOMB
Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau
2015 J jnl
IMSEQ - a fast and error aware approach to immunogenetic sequence analysis.
Bioinform.
Léon Kuchenbecker, Mikalai Nienen, Jochen Hecht, Avidan U. Neumann, Nina Babel, Knut Reinert, Peter N. Robinson
2015 J jnl
LocalAli: an evolutionary-based local alignment approach to identify functionally
Bioinform.
Jialu Hu, Knut Reinert
2015 J jnl
Methods for the detection and assembly of novel sequence in high-throughput sequencing data.
Bioinform.
Manuel Holtgrewe, Léon Kuchenbecker, Knut Reinert
2014 J jnl
Fiona: a parallel and automatic strategy for read error correction.
Bioinform.
Marcel H. Schulz, David Weese, Manuel Holtgrewe, Viktoria Dimitrova, Sijia Niu, Knut Reinert, Hugues Richard
2014 J jnl
Genome alignment with graph data structures: a comparison.
BMC Bioinform.
Birte Kehr, Kathrin Trappe, Manuel Holtgrewe, Knut Reinert
2014 J jnl
Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone.
Bioinform.
Kathrin Trappe, Anne-Katrin Emde, Hans-Christian Ehrlich, Knut Reinert
2014 J jnl
Journaled string tree - a scalable data structure for analyzing thousands of similar genomes on your laptop.
Bioinform.
René Rahn, David Weese, Knut Reinert
2014 J jnl
Lambda: the local aligner for massive biological data.
Bioinform.
Hannes Hauswedell, Jochen Singer, Knut Reinert
2014 J jnl
NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks.
Bioinform.
Jialu Hu, Birte Kehr, Knut Reinert
2013 — conf
From the Desktop to the Grid: conversion of KNIME Workflows to gUSE.
IWSG
Luis de la Garza, Jens Krüger, Charlotta Schärfe, Marc Röttig, Stephan Aiche, Knut Reinert, Oliver Kohlbacher
2013 J jnl
Optimal precursor ion selection for LC-MALDI MS/MS.
BMC Bioinform.
Alexandra Zerck, Eckhard Nordhoff, Hans Lehrach, Knut Reinert
2013 — conf
Scalable string similarity search/join with approximate seeds and multiple backtracking.
EDBT/ICDT Workshops
Enrico Siragusa, David Weese, Knut Reinert
2013 J jnl
The Duplication-Loss Small Phylogeny Problem: From Cherries to Trees.
J. Comput. Biol.
Sandro Andreotti, Knut Reinert, Stefan Canzar
2012 J jnl
Antilope - A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem.
IEEE ACM Trans. Comput. Biol. Bioinform.
Sandro Andreotti, Gunnar W. Klau, Knut Reinert
2012 J jnl
Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.
Bioinform.
Anne-Katrin Emde, Marcel H. Schulz, David Weese, Ruping Sun, Martin Vingron, Vera M. Kalscheuer, Stefan A. Haas, Knut Reinert
2012 J jnl
Fast and sensitive read mapping with approximate seeds and multiple backtracking
CoRR
Enrico Siragusa, David Weese, Knut Reinert
2012 C conf
Hidden Breakpoints in Genome Alignments.
WABI
Birte Kehr, Knut Reinert, Aaron E. Darling
2012 J jnl
PPINGUIN: Peptide Profiling Guided Identification of Proteins improves quantitation of iTRAQ ratios.
BMC Bioinform.
Chris Bauer, Frank Kleinjung, Dorothea Rutishauser, Christian Panse, Alexandra Chadt, Tanja Dreja, Hadi Al-Hasani, Knut Reinert, Ralph Schlapbach, Johannes Schuchhardt
2012 J jnl
RazerS 3: Faster, fully sensitive read mapping.
Bioinform.
David Weese, Manuel Holtgrewe, Knut Reinert
2011 J jnl
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping.
BMC Bioinform.
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, Knut Reinert
2011 J jnl
Antilope - A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem
CoRR
Sandro Andreotti, Gunnar W. Klau, Knut Reinert
2011 J jnl
Biomarker Discovery and Redundancy Reduction towards Classification using a Multi-factorial MALDI-TOF MS T2DM Mouse Model Dataset.
BMC Bioinform.
Chris Bauer, Frank Kleinjung, Celia J. Smith, Mark W. Towers, Ali Tiss, Alexandra Chadt, Tanja Dreja, Dieter Beule, Hadi Al-Hasani, Knut Reinert, Johannes Schuchhardt, Rainer Cramer
2011 J jnl
STELLAR: fast and exact local alignments.
BMC Bioinform.
Birte Kehr, David Weese, Knut Reinert
2010 J jnl
MicroRazerS: rapid alignment of small RNA reads.
Bioinform.
Anne-Katrin Emde, Marcel Grunert, David Weese, Knut Reinert, Silke R. Sperling
2010 J jnl
Oops I Did it Again... Sustainability in Sequence Analysis via Software Libraries.
ERCIM News
Knut Reinert
2010 — ch.
OpenMS and TOPP: Open Source Software for LC-MS Data Analysis.
Proteome Bioinformatics
Knut Reinert, Oliver Kohlbacher
2009 J jnl
A consistency-based consensus algorithm for
Bioinform.
Tobias Rausch, Sergey Koren, Gennady Denisov, David Weese, Anne-Katrin Emde, Andreas Döring, Knut Reinert
2009 — book
Biological Sequence Analysis Using the SeqAn C++ Library.
Andreas Gogol-Döring, Knut Reinert
2009 J jnl
Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors.
Algorithms
Raphael André Bauer, Kristian Rother, Peter Moor, Knut Reinert, Thomas Steinke, Janusz M. Bujnicki, Robert Preissner
2009 — conf
Integer Linear Programming in Computational Biology.
Efficient Algorithms
Ernst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert
2009 J jnl
Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments.
BioData Min.
Ole Schulz-Trieglaff, Egidijus Machtejevas, Knut Reinert, Hartmut Schlüter, Joachim Thiemann, Klaus Unger
2008 — conf
08101 Abstracts Collection - Computational Proteomics.
Computational Proteomics
Knut Reinert, Christian G. Huber, Kathrin Marcus, Michal Linial, Oliver Kohlbacher
2008 J jnl
An Exact Mathematical Programming Approach to Multiple RNA Sequence-Structure Alignment.
Algorithmic Oper. Res.
Markus Bauer, Gunnar W. Klau, Knut Reinert
2008 — ed.
Computational Proteomics, 02.03. - 07.03.2008
Computational Proteomics
Christian G. Huber, Oliver Kohlbacher, Michal Linial, Kathrin Marcus, Knut Reinert
2008 J jnl
Computational Quantification of Peptides from LC-MS Data.
J. Comput. Biol.
Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Leinenbach, Andreas Hildebrandt, Christian G. Huber, Knut Reinert
2008 C conf
Fast and Adaptive Variable Order Markov Chain Construction.
WABI
Marcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron
2008 J jnl
LC-MSsim - a simulation software for liquid chromatography mass spectrometry data.
BMC Bioinform.
Ole Schulz-Trieglaff, Nico Pfeifer, Clemens Gröpl, Oliver Kohlbacher, Knut Reinert
2008 J jnl
OpenMS - An open-source software framework for mass spectrometry.
BMC Bioinform.
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
2008 J jnl
Robust consensus computation.
BMC Bioinform.
Tobias Rausch, Anne-Katrin Emde, Knut Reinert
2008 C conf
Segment-based multiple sequence alignment.
ECCB
Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Döring, Cédric Notredame, Knut Reinert
2008 J jnl
SeqAn An efficient, generic C++ library for sequence analysis.
BMC Bioinform.
Andreas Döring, David Weese, Tobias Rausch, Knut Reinert
2007 B conf
A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data.
RECOMB
Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert
2007 — conf
A General Paradigm for Fast, Adaptive Clustering of Biological Sequences.
German Conference on Bioinformatics
Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern
2007 — conf
A geometric approach for the alignment of liquid chromatography - mass spectrometry data.
ISMB/ECCB (Supplement of Bioinformatics)
Eva Lange, Clemens Gröpl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian G. Huber, Knut Reinert
2007 J jnl
Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization.
BMC Bioinform.
Markus Bauer, Gunnar W. Klau, Knut Reinert
2007 J jnl
Integer linear programming approaches for non-unique probe selection.
Discret. Appl. Math.
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
2007 J jnl
TOPP - the OpenMS proteomics pipeline.
Bioinform.
Oliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm
2006 J jnl
A branch-and-cut algorithm for multiple sequence alignment.
Math. Program.
Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert
2006 — ed.
Computational Proteomics, 20.-25. November 2005
Computational Proteomics
Christian G. Huber, Oliver Kohlbacher, Knut Reinert
2006 Misc conf
High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques.
Pacific Symposium on Biocomputing
Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt
2005 — conf
05471 Abstract Collection - Computational Proteomics.
Computational Proteomics
Christian G. Huber, Oliver Kohlbacher, Knut Reinert
2005 — conf
05471 Executive Summary - Computational Proteomics.
Computational Proteomics
Christian G. Huber, Oliver Kohlbacher, Knut Reinert
2005 — conf
Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples.
CompLife
Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein
2005 J jnl
Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants.
BMC Bioinform.
Witold E. Wolski, Maciej Lalowski, Peter Jungblut, Knut Reinert
2005 — conf
Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins.
Computational Proteomics
Nathanaël Delmotte, Bettina M. Mayr, Andreas Leinenbach, Knut Reinert, Oliver Kohlbacher, Christoph L. Klein, Christian G. Huber
2005 — conf
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization.
CompLife
Markus Bauer, Gunnar W. Klau, Knut Reinert
2005 C conf
Multiple Structural RNA Alignment with Lagrangian Relaxation.
WABI
Markus Bauer, Gunnar W. Klau, Knut Reinert
2005 J jnl
Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process.
BMC Bioinform.
Witold E. Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert
2004 J jnl
Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges).
it Inf. Technol.
Oliver Kohlbacher, Knut Reinert
2004 — conf
Optimal robust non-unique probe selection using Integer Linear Programming.
ISMB/ECCB (Supplement of Bioinformatics)
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
2002 C conf
Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics.
ECCB
Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert
2002 C conf
Segment Match Refinement and Applications.
WABI
Aaron L. Halpern, Daniel H. Huson, Knut Reinert
2002 J jnl
The greedy path-merging algorithm for contig scaffolding.
J. ACM
Daniel H. Huson, Knut Reinert, Eugene W. Myers
2001 C conf
Comparing Assemblies Using Fragments and Mate-Pairs.
WABI
Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton
2001 — conf
Design of a compartmentalized shotgun assembler for the human genome.
ISMB (Supplement of Bioinformatics)
Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers
2001 B conf
The greedy path-merging algorithm for sequence assembly.
RECOMB
Daniel H. Huson, Knut Reinert, Eugene W. Myers
2001 — conf
Visualization challenges for a new cyberpharmaceutical computing paradigm.
IEEE Symposium on Parallel and Large-Data Visualization and Graphics
Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail
2000 J jnl
A polyhedral approach to sequence alignment problems.
Discret. Appl. Math.
John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron
2000 J jnl
An iterative method for faster sum-of-pairs multiple sequence alignment.
Bioinform.
Knut Reinert, Jens Stoye, Torsten Will
2000 J jnl
The Practical Use of the A* Algorithm for Exact Multiple Sequence Alignment.
J. Comput. Biol.
Martin Lermen, Knut Reinert
1999 — —
A polyhedral approach to sequence alignment problems.
Knut Reinert
1999 J jnl
An exact solution for the segment-to-segment multiple sequence alignment problem.
Bioinform.
Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert
1999 — conf
Combining Divide-and-Conquer, the A
German Conference on Bioinformatics
Knut Reinert, Jens Stoye, Torsten Will
1998 J jnl
A Polyhedral Approach to RNA Sequence Structure Alignment.
J. Comput. Biol.
Hans-Peter Lenhof, Knut Reinert, Martin Vingron
1998 B conf
A polyhedral approach to RNA sequence structure alignment.
RECOMB
Hans-Peter Lenhof, Knut Reinert, Martin Vingron
1998 — conf
An exact solution for the Segment-to-Segment multiple sequence alignment problem.
German Conference on Bioinformatics
Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern
1997 B conf
A branch-and-cut algorithm for multiple sequence alignment.
RECOMB
Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kurt Mehlhorn, John D. Kececioglu
1996 A* conf
Lower Bounds for Row Minima Searching (Extended Abstract).
ICALP
Phillip G. Bradford, Knut Reinert