Kiran Raosaheb Patil

15 papers Journal 15
YearRankTypeTitle / Venue / Authors
2022 J jnl
Bioactivity assessment of natural compounds using machine learning models trained on target similarity between drugs.
PLoS Comput. Biol.
Vinita Periwal, Stefan Bassler, Sergej Andrejev, Natalia Gabrielli, Kaustubh Raosaheb Patil, Athanasios Typas, Kiran Raosaheb Patil
2018 J jnl
Extensive impact of non-antibiotic drugs on human gut bacteria.
Nat.
Lisa Maier, Mihaela Pruteanu, Michael Kuhn, Georg Zeller, Anja Telzerow, Exene Erin Anderson, Ana Rita Brochado, Keith Conrad Fernandez, Hitomi Dose, Hirotada Mori, Kiran Raosaheb Patil, Peer Bork, Athanasios Typas
2018 J jnl
Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes.
PLoS Comput. Biol.
Joana C. Xavier, Kiran Raosaheb Patil, Isabel Rocha
2014 J jnl
Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes.
PLoS Comput. Biol.
Aleksej Zelezniak, Steven Sheridan, Kiran Raosaheb Patil
2012 J jnl
Impact of Stoichiometry Representation on Simulation of Genotype-Phenotype Relationships in Metabolic Networks.
PLoS Comput. Biol.
Ana Rita Brochado, Sergej Andrejev, Costas D. Maranas, Kiran Raosaheb Patil
2012 J jnl
Random sampling of elementary flux modes in large-scale metabolic networks.
Bioinform.
Daniel Machado, Zita Soons, Kiran Raosaheb Patil, Eugénio C. Ferreira, Isabel Rocha
2011 J jnl
PHUSER (Primer Help for USER): a novel tool for USER fusion primer design.
Nucleic Acids Res.
Lars Rønn Olsen, Niels Bjørn Hansen, Mads Tvillinggaard Bonde, Hans Jasper Genee, Dorte Koefoed Holm, Simon Carlsen, Bjarne Gram Hansen, Kiran Raosaheb Patil, Uffe Hasbro Mortensen, Rasmus Wernersson
2010 J jnl
BioMet Toolbox: genome-wide analysis of metabolism.
Nucleic Acids Res.
Marija Cvijovic, Roberto Olivares-Hernández, Rasmus Agren, Niklas Dahr, Wanwipa Vongsangnak, Intawat Nookaew, Kiran Raosaheb Patil, Jens Nielsen
2010 J jnl
Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes.
PLoS Comput. Biol.
Aleksej Zelezniak, Tune H. Pers, Simão Soares, Mary Elizabeth Patti, Kiran Raosaheb Patil
2010 J jnl
OptFlux: an open-source software platform for in silico metabolic engineering.
BMC Syst. Biol.
Isabel Rocha, Paulo Maia, Pedro Evangelista, Paulo Vilaça, Simão Soares, José P. Pinto, Jens Nielsen, Kiran Raosaheb Patil, Eugénio C. Ferreira, Miguel Rocha
2010 J jnl
Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium.
BMC Syst. Biol.
Arnau Montagud, Emilio Navarro, Pedro Fernández de Córdoba, Javier F. Urchueguía, Kiran Raosaheb Patil
2009 J jnl
Global transcriptional response of Saccharomyces cerevisiae to the deletion of SDH3.
BMC Syst. Biol.
Donatella Cimini, Kiran Raosaheb Patil, Chiara Schiraldi, Jens Nielsen
2008 J jnl
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks.
BMC Syst. Biol.
Ana Oliveira, Kiran Raosaheb Patil, Jens Nielsen
2008 J jnl
Natural computation meta-heuristics for the in silico optimization of microbial strains.
BMC Bioinform.
Miguel Rocha, Paulo Maia, Rui Mendes, José P. Pinto, Eugénio C. Ferreira, Jens Nielsen, Kiran Raosaheb Patil, Isabel Rocha
2005 J jnl
Evolutionary programming as a platform for
BMC Bioinform.
Kiran Raosaheb Patil, Isabel Rocha, Jochen Förster, Jens Nielsen