Kim-Anh Lê Cao

27 papers Journal 27
YearRankTypeTitle / Venue / Authors
2025 J jnl
PLSKO: a robust knockoff generator to control false discovery rate in omics variable selection.
Bioinform.
Guannan Yang, Ellen Menkhorst, Evdokia Dimitriadis, Kim-Anh Lê Cao
2025 J jnl
Semisynthetic simulation for microbiome data analysis.
Briefings Bioinform.
Kris Sankaran, Saritha Kodikara, Jingyi Jessica Li, Kim-Anh Lê Cao
2023 J jnl
MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis.
J. Open Source Softw.
Babak Shaban, Maria Mar del Quiroga, Robert Turnbull, Edoardo Tescari, Kim-Anh Lê Cao, Heroen Verbruggen
2023 J jnl
PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data.
Briefings Bioinform.
Yiwen Wang, Kim-Anh Lê Cao
2022 J jnl
Sincast: a computational framework to predict cell identities in single-cell transcriptomes using bulk atlases as references.
Briefings Bioinform.
Yidi Deng, Jarny Choi, Kim-Anh Lê Cao
2022 J jnl
Statistical challenges in longitudinal microbiome data analysis.
Briefings Bioinform.
Saritha Kodikara, Susan Ellul, Kim-Anh Lê Cao
2022 J jnl
timeOmics: an R package for longitudinal multi-omics data integration.
Bioinform.
Antoine Bodein, Marie-Pier Scott-Boyer, Olivier Périn, Kim-Anh Lê Cao, Arnaud Droit
2021 J jnl
A field guide to cultivating computational biology.
CoRR
Anne E. Carpenter, Casey S. Greene, Piero Carnici, Benilton S. Carvalho, Michiel de Hoon, Stacey D. Finley, Kim-Anh Lê Cao, Jerry S. H. Lee, Luigi Marchionni, Suzanne Sindi, Fabian J. Theis, Gregory P. Way, Jean Y. H. Yang, Elana J. Fertig
2021 J jnl
A multi-modal data harmonisation approach for discovery of COVID-19 drug targets.
Briefings Bioinform.
Tyrone Chen, Melcy Philip, Kim-Anh Lê Cao, Sonika Tyagi
2021 J jnl
multiomics: A user-friendly multi-omics data harmonisation R pipeline.
F1000Research
Tyrone Chen, Al J. Abadi, Kim-Anh Lê Cao, Sonika Tyagi
2020 J jnl
A simple, scalable approach to building a cross-platform transcriptome atlas.
PLoS Comput. Biol.
Paul W. Angel, Nadia Rajab, Yidi Deng, Chris M. Pacheco, Tyrone Chen, Kim-Anh Lê Cao, Jarny Choi, Christine A. Wells
2020 J jnl
Managing batch effects in microbiome data.
Briefings Bioinform.
Yiwen Wang, Kim-Anh Lê Cao
2019 J jnl
DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays.
Bioinform.
Amrit Singh, Casey P. Shannon, Benoît Gautier, Florian Rohart, Michaël Vacher, Scott J. Tebbutt, Kim-Anh Lê Cao
2017 J jnl
MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms.
BMC Bioinform.
Florian Rohart, Aida Eslami, Nicholas Matigian, Stéphanie Bougeard, Kim-Anh Lê Cao
2017 J jnl
PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation.
Bioinform.
Ralph Patrick, Bostjan Kobe, Kim-Anh Lê Cao, Mikael Bodén
2017 J jnl
mixOmics: An R package for 'omics feature selection and multiple data integration.
PLoS Comput. Biol.
Florian Rohart, Benoît Gautier, Amrit Singh, Kim-Anh Lê Cao
2015 J jnl
PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events.
Bioinform.
Ralph Patrick, Kim-Anh Lê Cao, Bostjan Kobe, Mikael Bodén
2012 J jnl
A novel approach for biomarker selection and theintegration of repeated measures experiments from two assays.
BMC Bioinform.
Benoit Liquet, Kim-Anh Lê Cao, Hakim Hocini, Rodolphe Thiébaut
2012 J jnl
Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets.
BMC Bioinform.
Fangzhou Yao, Jeff Coquery, Kim-Anh Lê Cao
2012 J jnl
Mapping the stabilome: a novel computational method for classifying metabolic protein stability.
BMC Syst. Biol.
Ralph Patrick, Kim-Anh Lê Cao, Melissa J. Davis, Bostjan Kobe, Mikael Bodén
2012 J jnl
Visualising associations between paired 'omics' data sets.
BioData Min.
Ignacio González, Kim-Anh Lê Cao, Melissa J. Davis, Sébastien Déjean
2011 J jnl
Sorting the nuclear proteome.
Bioinform.
Denis C. Bauer, Kai Willadsen, Fabian A. Buske, Kim-Anh Lê Cao, Timothy L. Bailey, Graham Dellaire, Mikael Bodén
2011 J jnl
Sparse PLS Discriminant Analysis: biologically relevant feature selection and graphical displays for multiclass problems.
BMC Bioinform.
Kim-Anh Lê Cao, Simon Boitard, Philippe Besse
2010 J jnl
Integrative mixture of experts to combine clinical factors and gene markers.
Bioinform.
Kim-Anh Lê Cao, Emmanuelle Meugnier, Geoffrey J. McLachlan
2009 J jnl
Multiclass classification and gene selection with a stochastic algorithm.
Comput. Stat. Data Anal.
Kim-Anh Lê Cao, Agnès Bonnet, Sébastien Gadat
2009 J jnl
Sparse canonical methods for biological data integration: application to a cross-platform study.
BMC Bioinform.
Kim-Anh Lê Cao, Pascal G. P. Martin, Christèle Robert-Granié, Philippe Besse
2009 J jnl
integrOmics: an R package to unravel relationships between two omics datasets.
Bioinform.
Kim-Anh Lê Cao, Ignacio González, Sébastien Déjean