Kim-Anh Do

25 papers Journal 24Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
AUPRC: a metric for evaluating the performance of
Briefings Bioinform.
Hongxu Zhu, Amir Asiaee, Leila Azinfar, Jun Li, Han Liang, Ehsan Irajizad, Kim-Anh Do, James P. Long
2025 J jnl
CAT: a conditional association test for microbiome data using a permutation approach.
Briefings Bioinform.
Yushu Shi, Liangliang Zhang, Kim-Anh Do, Robert R. Jenq, Christine B. Peterson
2025 J jnl
Causal models and prediction in cell line perturbation experiments.
BMC Bioinform.
James P. Long, Yumeng Yang, Shohei Shimizu, Thong Pham, Kim-Anh Do
2025 J jnl
Digital twins in healthcare: a comprehensive review and future directions.
Frontiers Digit. Health
Hamid Khoshfekr Rudsari, Becky Tseng, Hongxu Zhu, Lulu Song, Chunhui Gu, Abhishikta Roy, Ehsan Irajizad, Joseph Butner, James P. Long, Kim-Anh Do
2025 J jnl
Rank-based learning: a novel high-throughput algorithm resilient to missing data and effective for datasets with small sample size.
Briefings Bioinform.
Lulu Song, Hamid Khoshfekr Rudsari, Johannes F. Fahrmann, Jody V. Vykoukal, Sam Hanash, James P. Long, Kim-Anh Do, Ehsan Irajizad
2025 J jnl
Robust Learning on Noisy Graphs via Latent Space Constraints with External Knowledge.
CoRR
Chunhui Gu, Mohammad Sadegh Nasr, James P. Long, Kim-Anh Do, Ehsan Irajizad
2023 J jnl
A unified mediation analysis framework for integrative cancer proteogenomics with clinical outcomes.
Bioinform.
Licai Huang, James P. Long, Ehsan Irajizad, James D. Doecke, Kim-Anh Do, Min Jin Ha
2023 J jnl
Easy NanoString nCounter data analysis with the NanoTube.
Bioinform.
Caleb A. Class, Caiden J. Lukan, Christopher A. Bristow, Kim-Anh Do
2022 J jnl
A machine learning-based method for automatically identifying novel cells in annotating single-cell RNA-seq data.
Bioinform.
Ziyi Li, Yizhuo Wang, Irene Ganan-Gomez, Simona Colla, Kim-Anh Do
2022 J jnl
Application of Artificial Intelligence to Plasma Metabolomics Profiles to Predict Response to Neoadjuvant Chemotherapy in Triple-Negative Breast Cancer.
Frontiers Artif. Intell.
Ehsan Irajizad, Ranran Wu, Jody V. Vykoukal, Eunice Murage, Rachelle Spencer, Jennifer B. Dennison, Stacy Moulder, Elizabeth Ravenberg, Bora Lim, Jennifer Litton, Debu Tripathy, Vicente Valero, Senthil Damodaran, Gaiane M. Rauch, Beatriz E. Adrada, Rosalind Candelaria, Jason B. White, Abenaa Brewster, Banu Arun, James P. Long, Kim-Anh Do, Sam Hanash, Johannes F. Fahrmann
2022 J jnl
CNGPLD: case-control copy-number analysis using Gaussian process latent difference.
Bioinform.
David J. H. Shih, Ruoxing Li, Peter Müller, W. Jim Zheng, Kim-Anh Do, Shiaw-Yih Lin, Scott L. Carter
2021 J jnl
ProgPerm: Progressive permutation for a dynamic representation of the robustness of microbiome discoveries.
BMC Bioinform.
Liangliang Zhang, Yushu Shi, Kim-Anh Do, Christine B. Peterson, Robert R. Jenq
2021 J jnl
Scalable network estimation with L0 penalty.
Stat. Anal. Data Min.
Junghi Kim, Hongtu Zhu, Xiao Wang, Kim-Anh Do
2020 J jnl
Compositional zero-inflated network estimation for microbiome data.
BMC Bioinform.
Min Jin Ha, Junghi Kim, Jessica Galloway-Pena, Kim-Anh Do, Christine B. Peterson
2020 J jnl
NExUS: Bayesian simultaneous network estimation across unequal sample sizes.
Bioinform.
Priyam Das, Christine B. Peterson, Kim-Anh Do, Rehan Akbani, Veerabhadran Baladandayuthapani
2020 J jnl
aPCoA: covariate adjusted principal coordinates analysis.
Bioinform.
Yushu Shi, Liangliang Zhang, Kim-Anh Do, Christine B. Peterson, Robert R. Jenq
2018 J jnl
iDINGO - integrative differential network analysis in genomics with Shiny application.
Bioinform.
Caleb A. Class, Min Jin Ha, Veerabhadran Baladandayuthapani, Kim-Anh Do
2016 J jnl
SIFORM: shared informative factor models for integration of multi-platform bioinformatic data.
Bioinform.
Xuebei An, Jianhua Hu, Kim-Anh Do
2015 J jnl
DINGO: differential network analysis in genomics.
Bioinform.
Min Jin Ha, Veerabhadran Baladandayuthapani, Kim-Anh Do
2013 J jnl
Integrative network-based Bayesian analysis of diverse genomics data.
BMC Bioinform.
Wenting Wang, Veerabhadran Baladandayuthapani, Chris C. Holmes, Kim-Anh Do
2013 J jnl
iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data.
Bioinform.
Wenting Wang, Veerabhadran Baladandayuthapani, Jeffrey S. Morris, Bradley M. Broom, Ganiraju Manyam, Kim-Anh Do
2012 J jnl
Model averaging strategies for structure learning in Bayesian networks with limited data.
BMC Bioinform.
Bradley M. Broom, Kim-Anh Do, Devika Subramanian
2011 J jnl
Bayesian ensemble methods for survival prediction in gene expression data.
Bioinform.
Vinícius Bonato, Veerabhadran Baladandayuthapani, Bradley M. Broom, Erik P. Sulman, Kenneth D. Aldape, Kim-Anh Do
2010 J jnl
Bagged gene shaving for the robust clustering of high-throughput data.
Int. J. Bioinform. Res. Appl.
Bradley M. Broom, Erik P. Sulman, Kim-Anh Do, Mary E. Edgerton, Kenneth D. Aldape
1992 — conf
Alternative preprocessing techniques for discrete hidden Markov model phoneme recognition.
ICSLP
Andrew Tridgell, J. Bruce Millar, Kim-Anh Do