Kieran Smallbone

14 papers Journal 11Unranked 2
YearRankTypeTitle / Venue / Authors
2017 J jnl
Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli.
PLoS Comput. Biol.
Pierre Millard, Kieran Smallbone, Pedro Mendes
2016 J jnl
Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Eng.
Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
2015 J jnl
A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data.
Comput. Biol. Chem.
Brandon E. Barker, Narayanan Sadagopan, Yiping Wang, Kieran Smallbone, Christopher R. Myers, Hongwei Xi, Jason W. Locasale, Zhenglong Gu
2015 J jnl
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology.
BMC Syst. Biol.
Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga
2014 J jnl
BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology.
CoRR
Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga
2014 — ed.
Computational Methods in Systems Biology - 12th International Conference, CMSB 2014, Manchester, UK, November 17-19, 2014, Proceedings
CMSB
Pedro Mendes, Joseph O. Dada, Kieran Smallbone
2013 J jnl
Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance.
Database J. Biol. Databases Curation
Benjamin D. Heavner, Kieran Smallbone, Nathan D. Price, Larry P. Walker
2012 J jnl
Improving metabolic flux predictions using absolute gene expression data.
BMC Syst. Biol.
Dave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine Winder, Douglas B. Kell, Pedro Mendes, Neil Swainston
2012 J jnl
Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network.
BMC Syst. Biol.
Benjamin D. Heavner, Kieran Smallbone, Brandon Barker, Pedro Mendes, Larry P. Walker
2011 — conf
Kinetic modelling of large-scale metabolic networks.
CMSB
Pedro Mendes, Natalie J. Stanford, Kieran Smallbone
2011 J jnl
The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks.
J. Integr. Bioinform.
Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton
2010 J jnl
Further developments towards a genome-scale metabolic model of yeast.
BMC Syst. Biol.
Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes
2010 J jnl
Towards a genome-scale kinetic model of cellular metabolism.
BMC Syst. Biol.
Kieran Smallbone, Evangelos Simeonidis, Neil Swainston, Pedro Mendes
2007 — conf
A Model to Investigate the Feasibility of Fdg as a Surrogate Marker of Hypoxia.
ISBI
Catherine J. Kelly, Kieran Smallbone, Tiina Roose, Michael Brady