Khader Shameer

28 papers Misc 4Journal 21Unranked 3
YearRankTypeTitle / Venue / Authors
2021 J jnl
High Precision Mammography Lesion Identification From Imprecise Medical Annotations.
Frontiers Big Data
Ulzee An, Ankit Bhardwaj, Khader Shameer, Lakshminarayanan Subramanian
2021 J jnl
Predictive Modelling of Susceptibility to Substance Abuse, Mortality and Drug-Drug Interactions in Opioid Patients.
Frontiers Artif. Intell.
Ramya Dhatri Vunikili, Benjamin S. Glicksberg, Kipp W. Johnson, Joel T. Dudley, Lakshminarayanan Subramanian, Khader Shameer
2021 J jnl
TrialGraph: Machine Intelligence Enabled Insight from Graph Modelling of Clinical Trials.
CoRR
Christopher Yacoumatos, Stefano Bragaglia, Anshul Kanakia, Nils Svangård, Jonathan Mangion, Claire Donoghue, James Weatherall, Faisal M. Khan, Khader Shameer
2020 J jnl
Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses.
Briefings Bioinform.
Andrew C. Liu, Krishna Patel, Ramya Dhatri Vunikili, Kipp W. Johnson, Fahad Jibrin Abdu, Shivani Kamath Belman, Benjamin S. Glicksberg, Pratyush Tandale, Roberto Fontanez, Oommen K. Mathew, Andrew Kasarskis, Priyabrata Mukherjee, Lakshminarayanan Subramanian, Joel T. Dudley, Khader Shameer
2020 — conf
Uncovering Machine Learning-Ready Data from Public Clinical Trial Resources: A case-study on normalization across Aggregate Content of ClinicalTrials.gov.
BIBM
Emmette R. Hutchison, Youyi Zhang, Sreenath Nampally, James Weatherall, Faisal M. Khan, Khader Shameer
2019 J jnl
CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis.
Bioinform.
Marcus A. Badgeley, Manway Liu, Benjamin S. Glicksberg, Mark M. Shervey, John R. Zech, Khader Shameer, Joseph Lehar, Eric K. Oermann, Michael V. McConnell, Thomas M. Snyder, Joel T. Dudley
2018 Misc conf
Automated disease cohort selection using word embeddings from Electronic Health Records.
PSB
Benjamin S. Glicksberg, Riccardo Miotto, Kipp W. Johnson, Khader Shameer, Li Li, Rong Chen, Joel T. Dudley
2018 Misc conf
Causal inference on electronic health records to assess blood pressure treatment targets: An application of the parametric g formula.
PSB
Kipp W. Johnson, Benjamin S. Glicksberg, Rachel Hodos, Khader Shameer, Joel T. Dudley
2018 J jnl
Mammography Assessment using Multi-Scale Deep Classifiers.
CoRR
Ulzee An, Khader Shameer, Lakshmi Subramanian
2018 J jnl
Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining.
BMC Medical Informatics Decis. Mak.
Khader Shameer, M. Mercedes Perez-Rodriguez, Roy Bachar, Li Li, Amy Johnson, Kipp W. Johnson, Benjamin S. Glicksberg, Milo R. Smith, Ben Readhead, Joseph Scarpa, Jebakumar Jebakaran, Patricia H. Kovatch, Sabina Lim, Wayne K. Goodman, David L. Reich, Andrew Kasarskis, Nicholas P. Tatonetti, Joel T. Dudley
2018 J jnl
Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.
Briefings Bioinform.
Khader Shameer, Benjamin S. Glicksberg, Rachel Hodos, Kipp W. Johnson, Marcus A. Badgeley, Ben Readhead, Max S. Tomlinson, Timothy O'Connor, Riccardo Miotto, Brian A. Kidd, Rong Chen, Avi Ma'ayan, Joel T. Dudley
2017 Misc conf
Predictive Modeling of Hospital Readmission Rates Using Electronic Medical Record-Wide Machine Learning: A Case-Study Using Mount Sinai Heart Failure Cohort.
PSB
Khader Shameer, Kipp W. Johnson, Alexandre Yahi, Riccardo Miotto, Li Li, Doran Ricks, Jebakumar Jebakaran, Patricia H. Kovatch, Partho P. Sengupta, Annetine Gelijns, Alan Moskovitz, Bruce Darrow, David L. Reich, Andrew Kasarskis, Nicholas P. Tatonetti, Deborah F. Pinney, Joel T. Dudley
2017 J jnl
Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams.
Briefings Bioinform.
Khader Shameer, Marcus A. Badgeley, Riccardo Miotto, Benjamin S. Glicksberg, Joseph W. Morgan, Joel T. Dudley
2016 J jnl
Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks.
Bioinform.
Benjamin S. Glicksberg, Li Li, Marcus A. Badgeley, Khader Shameer, Roman Kosoy, Noam D. Beckmann, Nam Pho, Jörg Hakenberg, Meng Ma, Kristin L. Ayers, Gabriel E. Hoffman, Shuyu Dan Li, Eric E. Schadt, Chirag J. Patel, Rong Chen, Joel T. Dudley
2016 J jnl
Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.
Briefings Bioinform.
Khader Shameer, Lokesh P. Tripathi, Krishna R. Kalari, Joel T. Dudley, Ramanathan Sowdhamini
2015 Misc conf
An Integrative Pipeline for Multi-Modal Discovery of Disease Relationships.
Pacific Symposium on Biocomputing
Benjamin S. Glicksberg, Li Li, Wei-Yi Cheng, Khader Shameer, Jörg Hakenberg, Rafael Castellanos, Meng Ma, Lisong Shi, Hardik Shah, Joel T. Dudley, Rong Chen
2012 J jnl
Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome.
J. Clin. Bioinform.
Khader Shameer, Ramanathan Sowdhamini
2012 J jnl
Gene expression profiling of peripheral blood mononuclear cells in the setting of peripheral arterial disease.
J. Clin. Bioinform.
Rizwan Masud, Khader Shameer, Aparna Dhar, Keyue Ding, Iftikhar J. Kullo
2011 J jnl
3DSwap: curated knowledgebase of proteins involved in 3D domain swapping.
Database J. Biol. Databases Curation
Khader Shameer, Prashant Shingate, S. C. P. Manjunath, M. Karthika, Ganesan Pugalenthi, Ramanathan Sowdhamini
2011 J jnl
BioStar: An Online Question & Answer Resource for the Bioinformatics Community.
PLoS Comput. Biol.
Laurence D. Parnell, Pierre Lindenbaum, Khader Shameer, Giovanni Marco Dall'Olio, Daniel C. Swan, Lars Juhl Jensen, Simon J. Cockell, Brent S. Pedersen, Mary E. Mangan, Christopher A. Miller, István Albert
2011 — conf
Poster: HORIBALFRE: Higher Order Residue Interactions Based ALgorithm for Fold REcognition.
ICCABS
Pandurangan Sundaramurthy, Raashi Sreenivasan, Khader Shameer, Sunita Gakkhar, Ramanathan Sowdhamini
2011 J jnl
Ten Simple Rules for Getting Help from Online Scientific Communities.
PLoS Comput. Biol.
Giovanni Marco Dall'Olio, Jacopo Marino, Michael Schubert, Kevin L. Keys, Melanie I. Stefan, Colin S. Gillespie, Pierre Poulain, Khader Shameer, Robert Sugar, Brandon M. Invergo, Lars Juhl Jensen, Jaume Bertranpetit, Hafid Laayouni
2010 — conf
A Sequence Data Mining Protocol to Identify Best Representative Sequence for Protein Domain Families.
ICDM Workshops
V. S. Gowri, Khader Shameer, Chilamakuri Chandra Sekhar Reddy, Prashant Shingate, Ramanathan Sowdhamini
2010 J jnl
HORI: a web server to compute Higher Order Residue Interactions in protein structures.
BMC Bioinform.
Pandurangan Sundaramurthy, Khader Shameer, Raashi Sreenivasan, Sunita Gakkhar, Ramanathan Sowdhamini
2010 J jnl
PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes.
BMC Bioinform.
Khader Shameer, Lalima L. Madan, Shivamurthy Veeranna, Balasubramanian Gopal, Ramanathan Sowdhamini
2009 J jnl
3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach.
BioData Min.
Khader Shameer, Paramasivam Nagarajan, Kumar Gaurav, Ramanathan Sowdhamini
2008 J jnl
PURE: A webserver for the prediction of domains in unassigned regions in proteins.
BMC Bioinform.
Chilamakuri Chandra Sekhar Reddy, Khader Shameer, Bernard O. Offmann, Ramanathan Sowdhamini
2006 J jnl
HARMONY: a server for the assessment of protein structures.
Nucleic Acids Res.
Ganesan Pugalenthi, Khader Shameer, Narayanaswamy Srinivasan, Ramanathan Sowdhamini