Kevin Y. Yip

50 papers A* 4C 2Misc 1Journal 37Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
Driving Accurate Allergen Prediction with Protein Language Models and Generalization-Focused Evaluation.
CoRR
Brian Shing-Hei Wong, Joshua Mincheol Kim, Sin-Hang Fung, Qing Xiong, Kelvin Fu-Kiu Ao, Junkang Wei, Ran Wang, Dan Michelle Wang, Jingying Zhou, Bo Feng, Alfred Sze-Lok Cheng, Kevin Y. Yip, Stephen Kwok-Wing Tsui, Qin Cao
2025 J jnl
Towards Practical Automatic Piano Reduction using BERT with Semi-supervised Learning.
CoRR
Wan-Ki Wong, Ka-Ho To, Chuck-jee Chau, Lucas Wong, Kevin Y. Yip, Irwin King
2024 J jnl
Accurate identification of structural variations from cancer samples.
Briefings Bioinform.
Le Li, Chenyang Hong, Jie Xu, Claire Yik-Lok Chung, Alden King-Yung Leung, Delbert Almerick T. Boncan, Lixin Cheng, Kwok-Wai Lo, Paul B. S. Lai, John Wong, Jingying Zhou, Alfred Sze-Lok Cheng, Ting-Fung Chan, Feng Yue, Kevin Y. Yip
2022 J jnl
Deep learning identifies and quantifies recombination hotspot determinants.
Bioinform.
Yu Li, Siyuan Chen, Trisevgeni Rapakoulia, Hiroyuki Kuwahara, Kevin Y. Yip, Xin Gao
2022 J jnl
Reusability report: Capturing properties of biological objects and their relationships using graph neural networks.
Nat. Mach. Intell.
Chenyang Hong, Qin Cao, Zhenghao Zhang, Stephen Kwok-Wing Tsui, Kevin Y. Yip
2020 J jnl
A general near-exact k-mer counting method with low memory consumption enables
Bioinform.
Christina Huan Shi, Kevin Y. Yip
2020 J jnl
A unified framework for integrative study of heterogeneous gene regulatory mechanisms.
Nat. Mach. Intell.
Qin Cao, Zhenghao Zhang, Alexander Xi Fu, Qiong Wu, Tin-Lap Lee, Eric Lo, Alfred S. L. Cheng, Chao Cheng, Danny Leung, Kevin Y. Yip
2020 J jnl
Flexible k-mers with variable-length indels for identifying binding sequences of protein dimers.
Briefings Bioinform.
Chenyang Hong, Kevin Y. Yip
2020 J jnl
Shaping the nebulous enhancer in the era of high-throughput assays and genome editing.
Briefings Bioinform.
Edwin Yu-Kiu Ho, Qin Cao, Mengting Gu, Ricky Wai-Lun Chan, Qiong Wu, Mark Gerstein, Kevin Y. Yip
2018 J jnl
A comprehensive web tool for toehold switch design.
Bioinform.
Andrew Ching-Yuet To, David Ho-Ting Chu, Angela Ruoning Wang, Frances Cheuk-Yau Li, Alan Wai-On Chiu, Daisy Yuwei Gao, Chung Hang Jonathan Choi, Siu-Kai Kong, Ting-Fung Chan, King-Ming Chan, Kevin Y. Yip
2018 J jnl
A network approach to exploring the functional basis of gene-gene epistatic interactions in disease susceptibility.
Bioinform.
Danny Kit-Sang Yip, Landon L. Chan, Iris K. Pang, Wei Jiang, Nelson L. S. Tang, Weichuan Yu, Kevin Y. Yip
2017 J jnl
OMBlast: alignment tool for optical mapping using a seed-and-extend approach.
Bioinform.
Alden King-Yung Leung, Tsz-Piu Kwok, Raymond Wan, Ming Xiao, Pui-Yan Kwok, Kevin Y. Yip, Ting-Fung Chan
2017 J jnl
OMTools: a software package for visualizing and processing optical mapping data.
Bioinform.
Alden King-Yung Leung, Nana Jin, Kevin Y. Yip, Ting-Fung Chan
2016 J jnl
A novel method for discovering local spatial clusters of genomic regions with functional relationships from DNA contact maps.
Bioinform.
Xihao Hu, Christina Huan Shi, Kevin Y. Yip
2016 J jnl
Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.
Briefings Bioinform.
Xihao Hu, Yang Wu, Zhi John Lu, Kevin Y. Yip
2016 — conf
Towards a More Accurate Error Model for BioNano Optical Maps.
ISBRA
Menglu Li, Angel C. Y. Mak, Ernest T. Lam, Pui-Yan Kwok, Ming Xiao, Kevin Y. Yip, Ting-Fung Chan, Siu-Ming Yiu
2014 J jnl
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data.
Bioinform.
Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi-Kong Lau, Siu-Ming Yiu, Kevin Y. Yip
2014 J jnl
ECplot: an online tool for making standardized plots from large datasets for bioinformatics publications.
Bioinform.
Alex Chun-Hong Fok, Sunny Siu-Nam Mok, Sau Dan Lee, Kevin Y. Yip
2013 J jnl
Mining Order-Preserving Submatrices from Data with Repeated Measurements.
IEEE Trans. Knowl. Data Eng.
Kevin Y. Yip, Ben Kao, Xinjie Zhu, Chun Kit Chui, Sau Dan Lee, David W. Cheung
2011 J jnl
ACT: aggregation and correlation toolbox for analyses of genome tracks.
Bioinform.
Justin Jee, Joel S. Rozowsky, Kevin Y. Yip, Lucas Lochovsky, Robert D. Bjornson, Guoneng Zhong, Zhengdong D. Zhang, Yutao Fu, Jie Wang, Zhiping Weng, Mark Gerstein
2011 J jnl
Decision Trees for Uncertain Data.
IEEE Trans. Knowl. Data Eng.
Smith Tsang, Ben Kao, Kevin Y. Yip, Wai-Shing Ho, Sau Dan Lee
2011 J jnl
Metric and trigonometric pruning for clustering of uncertain data in 2D geometric space.
Inf. Syst.
Wang Kay Ngai, Ben Kao, Reynold Cheng, Michael Chau, Sau Dan Lee, David W. Cheung, Kevin Y. Yip
2009 J jnl
A semi-supervised approach to projected clustering with applications to microarray data.
Int. J. Data Min. Bioinform.
Kevin Y. Yip, Lin Cheung, David W. Cheung, Liping Jing, Michael K. Ng
2009 A* conf
Decision Trees for Uncertain Data.
ICDE
Smith Tsang, Ben Kao, Kevin Y. Yip, Wai-Shing Ho, Sau Dan Lee
2009 J jnl
Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels.
BMC Bioinform.
Kevin Y. Yip, Philip M. Kim, Drew McDermott, Mark Gerstein
2009 J jnl
Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions.
Bioinform.
Kevin Y. Yip, Mark Gerstein
2008 C conf
A Two-Stage Audio Retrieval Method for Searching Unannotated Audio Clips.
ISM
Songhua Xu, Suchao Chen, Kevin Y. Yip, Francis C. M. Lau, Xueying Qin
2008 J jnl
An integrated system for studying residue coevolution in proteins.
Bioinform.
Kevin Y. Yip, Prianka Patel, Philip M. Kim, Donald M. Engelman, Drew McDermott, Mark Gerstein
2008 J jnl
Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques.
J. Am. Medical Informatics Assoc.
Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung
2008 J jnl
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0.
J. Biomed. Informatics
Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch
2008 A* conf
Mining Order-Preserving Submatrices from Data with Repeated Measurements.
ICDM
Chun Kit Chui, Ben Kao, Kevin Y. Yip, Sau Dan Lee
2007 J jnl
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.
BMC Bioinform.
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Martin H. Schultz, Mark Gerstein
2007 J jnl
Mining periodic patterns with gap requirement from sequences.
ACM Trans. Knowl. Discov. Data
Minghua Zhang, Ben Kao, David W. Cheung, Kevin Y. Yip
2007 J jnl
On mining micro-array data by Order-Preserving Submatrix.
Int. J. Bioinform. Res. Appl.
Lin Cheung, David W. Cheung, Ben Kao, Kevin Y. Yip, Michael K. Ng
2007 J jnl
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.
Bioinform.
Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein
2006 A* conf
Efficient Clustering of Uncertain Data.
ICDM
Wang Kay Ngai, Ben Kao, Chun Kit Chui, Reynold Cheng, Michael Chau, Kevin Y. Yip
2006 — conf
Input Validation for Semi-supervised Clustering.
ICDM Workshops
Kevin Y. Yip, Michael K. Ng, David W. Cheung
2006 J jnl
Progressive skylining over Web-accessible databases.
Data Knowl. Eng.
Eric Lo, Kevin Y. Yip, King-Ip Lin, David W. Cheung
2006 Misc conf
SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services.
Pacific Symposium on Biocomputing
Kevin Y. Yip, Peishen Qi, Martin H. Schultz, David W. Cheung, Kei-Hoi Cheung
2006 J jnl
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.
Bioinform.
Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein
2005 J jnl
CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs.
Bioinform.
Sio Iong Ao, Kevin Y. Yip, Michael K. Ng, David Wai-Lok Cheung, Pui-Yee Fong, Ian Melhado, Pak Chung Sham
2005 — conf
Mining Periodic Patterns with Gap Requirement from Sequences.
SIGMOD Conference
Minghua Zhang, Ben Kao, David Wai-Lok Cheung, Kevin Y. Yip
2005 A* conf
On Discovery of Extremely Low-Dimensional Clusters using Semi-Supervised Projected Clustering.
ICDE
Kevin Y. Yip, David W. Cheung, Michael K. Ng
2005 — conf
On Mining Micro-array data by Order-Preserving Submatrix.
ICDE Workshops
Lin Cheung, Kevin Y. Yip, David W. Cheung, Ben Kao, Michael K. Ng
2005 — conf
YeastHub: a semantic web use case for integrating data in the life sciences domain.
ISMB (Supplement of Bioinformatics)
Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein
2004 J jnl
A web services choreography scenario for interoperating bioinformatics applications.
BMC Bioinform.
Remko de Knikker, Youjun Guo, Jin-Long Li, Albert K. H. Kwan, Kevin Y. Yip, David W. Cheung, Kei-Hoi Cheung
2004 J jnl
HARP: A Practical Projected Clustering Algorithm.
IEEE Trans. Knowl. Data Eng.
Kevin Y. Yip, David W. Cheung, Michael K. Ng
2004 C conf
Identifying Projected Clusters from Gene Expression Profiles.
BIBE
Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung
2004 J jnl
Identifying projected clusters from gene expression profiles.
J. Biomed. Informatics
Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung
2003 — conf
A highly-usable projected clustering algorithm for gene expression profiles.
BIOKDD
Kevin Y. Yip, David W. Cheung, Michael K. Ng