Kevin Molloy

26 papers C 1Journal 11Unranked 14
YearRankTypeTitle / Venue / Authors
2022 J jnl
MoMA-LoopSampler: a web server to exhaustively sample protein loop conformations.
Bioinform.
Amélie Barozet, Kevin Molloy, Marc Vaisset, Christophe Zanon, Pierre Fauret, Thierry Siméon, Juan Cortés
2020 J jnl
A reinforcement-learning-based approach to enhance exhaustive protein loop sampling.
Bioinform.
Amélie Barozet, Kevin Molloy, Marc Vaisset, Thierry Siméon, Juan Cortés
2020 — conf
POST: A Machine Learning Based Paper Organization and Scheduling Tool.
GROUP (Companion)
Nathan Moore, Kevin Molloy, William Lovo, Sven Mayer, Pawel W. Wozniak, Michael Stewart
2019 — conf
Employing Deep Learning to Study Biomolecules.
BCB
Daniel Veltri, Kevin Molloy
2019 J jnl
ROMEO: A Plug-and-play Software Platform of Robotics-inspired Algorithms for Modeling Biomolecular Structures and Motions.
CoRR
Kevin Molloy, Erion Plaku, Amarda Shehu
2019 J jnl
Simultaneous system design and path planning: A sampling-based algorithm.
Int. J. Robotics Res.
Kevin Molloy, Laurent Denarie, Marc Vaisset, Thierry Siméon, Juan Cortés
2018 — conf
ACM-BCB 2018 Computational Structural Bioinformatics Workshop (CSBW) Chairs' Welcome.
BCB
Filip Jagodzinski, Brian Y. Chen, Kevin Molloy
2018 J jnl
Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules.
Parallel Comput.
Alejandro Estaña, Kevin Molloy, Marc Vaisset, Nathalie Sibille, Thierry Siméon, Pau Bernadó, Juan Cortés
2018 — conf
Modeling Macromolecular Structures and Motions: Computational Methods for Sampling and Analysis of Energy Landscapes.
BCB
Kevin Molloy, Nasrin Akhter, Amarda Shehu
2017 — conf
ACM-BCB '17 Tutorial: Robotics-inspired Algorithms for Modeling Protein Structures and Motions.
BCB
Kevin Molloy, David Morris, Amarda Shehu
2017 — conf
The 2017 Computational Structural Bioinformatics Workshop: CSBW 2017.
BCB
Nurit Haspel, Amarda Shehu, Kevin Molloy
2016 J jnl
A stochastic roadmap method to model protein structural transitions.
Robotica
Kevin Molloy, Rudy Clausen, Amarda Shehu
2016 C conf
Combining System Design and Path Planning.
WAFR
Laurent Denarie, Kevin Molloy, Marc Vaisset, Thierry Siméon, Juan Cortés
2015 — conf
Interleaving Global and Local Search for Protein Motion Computation.
ISBRA
Kevin Molloy, Amarda Shehu
2014 J jnl
Exploring representations of protein structure for automated remote homology detection and mapping of protein structure space.
BMC Bioinform.
Kevin Molloy, M. Jennifer Van, Daniel Barbará, Amarda Shehu
2013 — conf
Higher-order representations of protein structure space.
ICCABS
Kevin Molloy, M. Jennifer Van, Daniel Barbará, Amarda Shehu
2013 J jnl
Probabilistic Search and Energy Guidance for Biased Decoy Sampling in Ab Initio Protein Structure Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kevin Molloy, Sameh N. Saleh, Amarda Shehu
2012 — conf
A robotics-inspired method to sample conformational paths connecting known functionally-relevant structures in protein systems.
BIBM Workshops
Kevin Molloy, Amarda Shehu
2012 — conf
A tree-based search to bias sampling of protein decoy conformations.
BIBM Workshops
Kevin Molloy, Amarda Shehu
2012 J jnl
Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules.
Adv. Artif. Intell.
Brian S. Olson, Irina Hashmi, Kevin Molloy, Amarda Shehu
2012 — conf
Biased decoy sampling to aid the selection of near-native protein conformations.
BCB
Kevin Molloy, Amarda Shehu
2012 J jnl
Guiding Probabilistic Search of the protein conformational Space with Structural Profiles.
J. Bioinform. Comput. Biol.
Brian S. Olson, Kevin Molloy, S. Farid Hendi, Amarda Shehu
2012 — conf
Mapping conformational pathways between known functional protein states.
BIBM Workshops
Kevin Molloy, Amarda Shehu
2011 — conf
Assembly of low-energy protein conformations with heterogeneous fragments.
BIBM Workshops
Kevin Molloy, Amarda Shehu
2011 J jnl
In Search of the protein Native State with a Probabilistic Sampling Approach.
J. Bioinform. Comput. Biol.
Brian S. Olson, Kevin Molloy, Amarda Shehu
2010 — conf
Enhancing Sampling of the Conformational Space Near the Protein Native State.
BIONETICS
Brian S. Olson, Kevin Molloy, Amarda Shehu