Kevin K. Yang

23 papers A* 1A 1Journal 20Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Trainable subnetworks reveal insights into structure knowledge organization in protein language models.
PLoS Comput. Biol.
Ria Vinod, Ava P. Amini, Lorin Crawford, Kevin K. Yang
2025 J jnl
Benchmarking uncertainty quantification for protein engineering.
PLoS Comput. Biol.
Kevin P. Greenman, Ava P. Amini, Kevin K. Yang
2025 J jnl
Few-shot Protein Fitness Prediction via In-context Learning and Test-time Training.
CoRR
Felix Teufel, Aaron Kollasch, Yining Huang, Ole Winther, Kevin K. Yang, Pascal Notin, Debora S. Marks
2025 J jnl
MotifBench: A standardized protein design benchmark for motif-scaffolding problems.
CoRR
Zhuoqi Zheng, Bo Zhang, Kieran Didi, Kevin K. Yang, Jason Yim, Joseph L. Watson, Hai-Feng Chen, Brian L. Trippe
2025 J jnl
ProtNote: a multimodal method for protein-function annotation.
Bioinform.
Samir Char, Nathaniel Corley, Sarah Alamdari, Kevin K. Yang, Ava P. Amini
2025 J jnl
Tokenized and continuous embedding compressions of protein sequence and structure.
Patterns
Amy X. Lu, Wilson Yan, Kevin K. Yang, Vladimir Gligorijevic, Kyunghyun Cho, Pieter Abbeel, Richard Bonneau, Nathan C. Frey
2024 J jnl
EnzymeFlow: Generating Reaction-specific Enzyme Catalytic Pockets through Flow Matching and Co-Evolutionary Dynamics.
CoRR
Chenqing Hua, Yong Liu, Dinghuai Zhang, Odin Zhang, Sitao Luan, Kevin K. Yang, Guy Wolf, Doina Precup, Shuangjia Zheng
2024 A* conf
Feature Reuse and Scaling: Understanding Transfer Learning with Protein Language Models.
ICML
Francesca-Zhoufan Li, Ava P. Amini, Yisong Yue, Kevin K. Yang, Alex Xijie Lu
2023 J jnl
Deep self-supervised learning for biosynthetic gene cluster detection and product classification.
PLoS Comput. Biol.
Carolina Rios-Martinez, Nicholas Bhattacharya, Ava P. Amini, Lorin Crawford, Kevin K. Yang
2023 J jnl
From noise to protein with image models.
Nat. Comput. Sci.
Ava P. Amini, Kevin K. Yang
2022 J jnl
A topological data analytic approach for discovering biophysical signatures in protein dynamics.
PLoS Comput. Biol.
Wai-Shing Tang, Gabriel Monteiro da Silva, Henry Kirveslahti, Erin Skeens, Bibo Feng, Timothy Sudijono, Kevin K. Yang, Sayan Mukherjee, Brenda M. Rubenstein, Lorin Crawford
2022 J jnl
Exploring evolution-based & -free protein language models as protein function predictors.
CoRR
Mingyang Hu, Fajie Yuan, Kevin K. Yang, Fusong Ju, Jin Su, Hui Wang, Fei Yang, Qiuyang Ding
2022 J jnl
Machine learning modeling of family wide enzyme-substrate specificity screens.
PLoS Comput. Biol.
Samuel Goldman, Ria Das, Kevin K. Yang, Connor W. Coley
2022 J jnl
Protein structure generation via folding diffusion.
CoRR
Kevin E. Wu, Kevin K. Yang, Rianne van den Berg, James Y. Zou, Alex X. Lu, Ava P. Amini
2021 J jnl
Adaptive machine learning for protein engineering.
CoRR
Brian L. Hie, Kevin K. Yang
2021 — conf
FLIP: Benchmark tasks in fitness landscape inference for proteins.
NeurIPS Datasets and Benchmarks
Christian Dallago, Jody Mou, Kadina E. Johnston, Bruce J. Wittmann, Nicholas Bhattacharya, Samuel Goldman, Ali Madani, Kevin K. Yang
2021 J jnl
Machine learning modeling of family wide enzyme-substrate specificity screens.
CoRR
Samuel Goldman, Ria Das, Kevin K. Yang, Connor W. Coley
2021 J jnl
Protein sequence design with deep generative models.
CoRR
Zachary Wu, Kadina E. Johnston, Frances H. Arnold, Kevin K. Yang
2019 A conf
Batched Stochastic Bayesian Optimization via Combinatorial Constraints Design.
AISTATS
Kevin K. Yang, Yuxin Chen, Alycia Lee, Yisong Yue
2019 J jnl
Batched Stochastic Bayesian Optimization via Combinatorial Constraints Design.
CoRR
Kevin K. Yang, Yuxin Chen, Alycia Lee, Yisong Yue
2018 J jnl
Learned protein embeddings for machine learning.
Bioinform.
Kevin K. Yang, Zachary Wu, Claire N. Bedbrook, Frances H. Arnold
2018 J jnl
Learned protein embeddings for machine learning.
Bioinform.
Kevin K. Yang, Zachary Wu, Claire N. Bedbrook, Frances H. Arnold
2017 J jnl
Machine learning to design integral membrane channelrhodopsins for efficient eukaryotic expression and plasma membrane localization.
PLoS Comput. Biol.
Claire N. Bedbrook, Kevin K. Yang, Austin J. Rice, Viviana Gradinaru, Frances H. Arnold