Kevin J. Liu

21 papers Journal 7Unranked 14
YearRankTypeTitle / Venue / Authors
2025 — conf
Detecting and Mapping Local Model Violations During Biomolecular Sequence Analysis: a REsampling and Visual EvALuation Approach.
RECOMB-CG
Meijun Gao, Kevin J. Liu
2025 J jnl
Phylogenetic Placement of Aligned Genomes and Metagenomes With Non-Tree-Like Evolutionary Histories.
IEEE Trans. Comput. Biol. Bioinform.
Md Alamin, Kevin J. Liu
2025 J jnl
The Impact of Species Tree Estimation Error on Cophylogenetic Reconstruction.
IEEE Trans. Comput. Biol. Bioinform.
Julia Zheng, Yuya Nishida, Alicja Okrasinska, Gregory M. Bonito, Elizabeth A. C. Heath-Heckman, Kevin J. Liu
2024 — conf
A Statistical Optimization Technique to Inform Statistical Resampling Assessments of Phylogenetic Reconstruction Reliability.
BIBM
Byungho Lee, Kevin J. Liu
2024 — conf
Estimating confidence intervals on reconstructed cophylogenies using bootstrap resampling.
BIBM
Julia Zheng, Yuya Nishida, Elizabeth A. C. Heath-Heckman, Kevin J. Liu
2023 — conf
Phylogenetic Placement of Aligned Genomes and Metagenomes with Non-tree-like Evolutionary Histories.
BCB
Md Alamin, Kevin J. Liu
2023 — conf
Reconstructing Phylogenies Using Branch-Variable Substitution Models and Unaligned Biomolecular Sequences: A Performance Study and New Resampling Method.
BCB
Rei Doko, Kevin J. Liu
2023 — conf
The Impact of Species Tree Estimation Error on Cophylogenetic Reconstruction.
BCB
Julia Zheng, Yuya Nishida, Alicja Okrasinska, Gregory M. Bonito, Elizabeth A. C. Heath-Heckman, Kevin J. Liu
2022 — conf
The impact of gene sequence alignment and gene tree estimation error on summary-based species network estimation.
BCB
Meijun Gao, Wei Wang, Kevin J. Liu
2021 J jnl
Build a better bootstrap and the RAWR shall beat a random path to your door: phylogenetic support estimation revisited.
Bioinform.
Wei Wang, Ahmad Hejasebazzi, Julia Zheng, Kevin J. Liu
2021 — conf
Statistical analysis of GC-biased gene conversion and recombination hotspots in eukaryotic genomes: a phylogenetic hidden Markov model-based approach.
BCB
Meijun Gao, Kevin J. Liu
2020 J jnl
Non-parametric and semi-parametric support estimation using SEquential RESampling random walks on biomolecular sequences.
Algorithms Mol. Biol.
Wei Wang, Jack Smith, Hussein A. Hejase, Kevin J. Liu
2019 — conf
An Application of Random Walk Resampling to Phylogenetic HMM Inference and Learning.
BIBM
Wei Wang, Qiqige Wuyun, Kevin J. Liu
2019 — conf
Scalable Statistical Introgression Mapping Using Approximate Coalescent-Based Inference.
BCB
Qiqige Wuyun, Nicholas W. VanKuren, Marcus Kronforst, Sean P. Mullen, Kevin J. Liu
2019 — conf
Scalable Statistical Introgression Mapping Using Approximate Coalescent-Based Inference.
BCB
Qiqige Wuyun, Nicholas W. VanKuren, Marcus Kronforst, Sean P. Mullen, Kevin J. Liu
2018 — conf
FastNet: Fast and Accurate Statistical Inference of Phylogenetic Networks Using Large-Scale Genomic Sequence Data.
RECOMB-CG
Hussein A. Hejase, Natalie Vande Pol, Gregory M. Bonito, Kevin J. Liu
2018 — conf
Non-parametric and Semi-parametric Support Estimation Using SEquential RESampling Random Walks on Biomolecular Sequences.
RECOMB-CG
Wei Wang, Jack Smith, Hussein A. Hejase, Kevin J. Liu
2017 — conf
Coal-Miner: A Statistical Method for GWA Studies of Quantitative Traits with Complex Evolutionary Origins.
BCB
Hussein A. Hejase, Natalie Vande Pol, Gregory M. Bonito, Patrick P. Edger, Kevin J. Liu
2016 J jnl
A scalability study of phylogenetic network inference methods using empirical datasets and simulations involving a single reticulation.
BMC Bioinform.
Hussein A. Hejase, Kevin J. Liu
2016 J jnl
Mapping the genomic architecture of adaptive traits with interspecific introgressive origin: a coalescent-based approach.
BMC Genom.
Hussein A. Hejase, Kevin J. Liu
2014 J jnl
An HMM-Based Comparative Genomic Framework for Detecting Introgression in Eukaryotes.
PLoS Comput. Biol.
Kevin J. Liu, Jingxuan Dai, Kathy Truong, Ying Song, Michael H. Kohn, Luay Nakhleh