Kevin Bretonnel Cohen

56 papers Misc 7Journal 17Unranked 13

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	High-quality gene/disease embedding in a multi-relational heterogeneous graph after a joint matrix/tensor decomposition. J. Biomed. Informatics Kaiyin Zhou, Sheng Zhang, Yuxing Wang, Kevin Bretonnel Cohen, Jin-Dong Kim, Qi Luo, Xinzhi Yao, Xingyu Zhou, Jingbo Xia
2022	—	`ed.`	Proceedings of the 21st Workshop on Biomedical Language Processing, BioNLP@ACL 2022, Dublin, Ireland, May 26, 2022 BioNLP@ACL Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2021	J	`jnl`	Bridging heterogeneous mutation data to enhance disease gene discovery. Briefings Bioinform. Kaiyin Zhou, Yuxing Wang, Kevin Bretonnel Cohen, Jin-Dong Kim, Xiaohang Ma, Zhixue Shen, Xiangyu Meng, Jingbo Xia
2021	—	`ed.`	Proceedings of the 20th Workshop on Biomedical Language Processing, BioNLP@NAACL-HLT 2021, Online, June 11, 2021 BioNLP@NAACL-HLT Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2021	Misc	`conf`	Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. AMIA Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman
2020	J	`jnl`	BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
2020	—	`ed.`	Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, BioNLP 2020, Online, July 9, 2020 BioNLP Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2020	—	`ed.`	Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020 NLP4COVID@EMNLP Karin Verspoor, Kevin Bretonnel Cohen, Michael Conway, Berry de Bruijn, Mark Dredze, Rada Mihalcea, Byron C. Wallace
2019	J	`jnl`	BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
2019	—	`conf`	Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies. WMT (3) Rachel Bawden, Kevin Bretonnel Cohen, Cristian Grozea, Antonio Jimeno-Yepes, Madeleine Kittner, Martin Krallinger, Nancy Mah, Aurélie Névéol, Mariana L. Neves, Felipe Soares, Amy Siu, Karin Verspoor, Maika Vicente Navarro
2019	—	`ed.`	Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL 2019, Florence, Italy, August 1, 2019. BioNLP@ACL Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2018	—	`conf`	Guideline Design of an Active Gene Annotation Corpus for the Purpose of Drug Repurposing. CISP-BMEI Yuxing Wang, Xinzhi Yao, Kaiyin Zhou, Xuan Qin, Jin-Dong Kim, Kevin Bretonnel Cohen, Jingbo Xia
2018	—	`ed.`	Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018 BioNLP Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2018	—	`conf`	The Curative Power of Medical Data. JCDL Daniela Gîfu, Diana Trandabat, Kevin Bretonnel Cohen, Jingbo Xia
2018	—	`conf`	Trigger Words Detection by Integrating Attention Mechanism into Bi-LSTM Neural Network - A Case Study in PubMED-Wide Trigger Words Detection for Pancreatic Cancer. CCL Kaiyin Zhou, Xinzhi Yao, Shuguang Wang, Jin-Dong Kim, Kevin Bretonnel Cohen, Ruiying Chen, Yuxing Wang, Jingbo Xia
2017	—	`conf`	A semantic knowledge-base approach to drug-drug interaction discovery. BIBM Ignacio Tripodi, Kevin Bretonnel Cohen, Lawrence E. Hunter
2017	—	`ed.`	BioNLP 2017, Vancouver, Canada, August 4, 2017 BioNLP Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Junichi Tsujii
2017	—	`conf`	CLEF eHealth 2017 Multilingual Information Extraction task Overview: ICD10 Coding of Death Certificates in English and French. CLEF (Working Notes) Aurélie Névéol, Aude Robert, Robert Anderson, Kevin Bretonnel Cohen, Cyril Grouin, Thomas Lavergne, Grégoire Rey, Claire Rondet, Pierre Zweigenbaum
2017	J	`jnl`	Erratum to: Replicability and reproducibility of research results for human language technology: introducing an LRE special section. Lang. Resour. Evaluation António Branco, Kevin Bretonnel Cohen, Piek Vossen, Nancy Ide, Nicoletta Calzolari
2017	—	`conf`	Inter-Annotator Agreement and the Upper Limit on Machine Performance: Evidence from Biomedical Natural Language Processing. MedInfo Mayla Boguslav, Kevin Bretonnel Cohen
2017	—	`ed.`	Proceedings of the Biomedical NLP Workshop associated with RANLP 2017, Varna, Bulgaria, September 2017 BiomedicalNLP@RANLP Svetla Boytcheva, Kevin Bretonnel Cohen, Guergana Savova, Galia Angelova
2017	J	`jnl`	Replicability and reproducibility of research results for human language technology: introducing an LRE special section. Lang. Resour. Evaluation António Branco, Kevin Bretonnel Cohen, Piek Vossen, Nancy Ide, Nicoletta Calzolari
2017	Misc	`conf`	Reproducibility in Biomedical Natural Language Processing. AMIA Kevin Bretonnel Cohen, Aurélie Névéol, Jingbo Xia, Negacy D. Hailu, Cyril Grouin, Lawrence E. Hunter, Pierre Zweigenbaum
2016	—	`conf`	Clinical Information Extraction at the CLEF eHealth Evaluation lab 2016. CLEF (Working Notes) Aurélie Névéol, Kevin Bretonnel Cohen, Cyril Grouin, Thierry Hamon, Thomas Lavergne, Liadh Kelly, Lorraine Goeuriot, Grégoire Rey, Aude Robert, Xavier Tannier, Pierre Zweigenbaum
2016	J	`jnl`	Crowdsourcing and curation: perspectives from biology and natural language processing. Database J. Biol. Databases Curation Lynette Hirschman, Karën Fort, Stéphanie Boué, Nikos Kyrpides, Rezarta Islamaj Dogan, Kevin Bretonnel Cohen
2016	—	`ed.`	Proceedings of the 15th Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2016, Berlin, Germany, August 12, 2016 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2016	—	`ed.`	Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining, BioTxtM@COLING 2016, Osaka, Japan, December 12, 2016 BioTxtM@COLING 2016 Sophia Ananiadou, Riza Batista-Navarro, Kevin Bretonnel Cohen, Dina Demner-Fushman, Paul Thompson
2016	—	`conf`	Replicability of Research in Biomedical Natural Language Processing: a pilot evaluation for a coding task. Louhi@EMNLP Aurélie Névéol, Kevin Bretonnel Cohen, Cyril Grouin, Aude Robert
2015	—	`ed.`	Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015 BioNLP@IJCNLP Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2015	Misc	`conf`	Training the Next Generation of Quantitative Biologists in the Era of Big Data. Pacific Symposium on Biocomputing Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Kevin Bretonnel Cohen, Elizabeth Wethington, Carsten Görg, Lawrence E. Hunter, Spencer V. Muse, Predrag Radivojac, Jason H. Moore
2014	—	`conf`	A repository of semantic types in the MIMIC II database clinical notes. BioNLP@ACL Richard Osborne, Alan R. Aronson, Kevin Bretonnel Cohen
2014	J	`jnl`	BioCreative-IV virtual issue. Database J. Biol. Databases Curation Cecilia N. Arighi, Cathy H. Wu, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Alfonso Valencia, Zhiyong Lu, W. John Wilbur, Thomas C. Wiegers
2014	J	`jnl`	BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semant. Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-An Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin
2014	—	`ed.`	Proceedings of BioNLP, Baltimore, Maryland, USA, BioNLP@ACL 2014, June 27-28, 2014 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2014	Misc	`conf`	Session introduction. Pacific Symposium on Biocomputing Graciela Gonzalez, Kevin Bretonnel Cohen, Robert Leaman, Casey S. Greene, Nigam Shah, Maricel G. Kann, Jieping Ye
2014	—	`conf`	Temporal Expression Recognition for Cell Cycle Phase Concepts in Biomedical Literature. BioNLP@ACL Negacy D. Hailu, Natalya Panteleyeva, Kevin Bretonnel Cohen
2013	J	`jnl`	BioC: a minimalist approach to interoperability for biomedical text processing. Database J. Biol. Databases Curation Donald C. Comeau, Rezarta Islamaj Dogan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
2013	—	`conf`	Earlier Identification of Epilepsy Surgery Candidates Using Natural Language Processing. BioNLP@ACL Pawel Matykiewicz, Kevin Bretonnel Cohen, Katherine D. Holland, Tracy A. Glauser, Shannon M. Standridge, Karin M. Verspoor, John Pestian
2013	J	`jnl`	Mining FDA drug labels for medical conditions. BMC Medical Informatics Decis. Mak. Qi Li, Louise Deléger, Todd Lingren, Haijun Zhai, Megan Kaiser, Laura Stoutenborough, Anil G. Jegga, Kevin Bretonnel Cohen, Imre Solti
2013	—	`ed.`	Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2013, Sofia, Bulgaria, August 8, 2013 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Junichi Tsujii
2013	—	`ed.`	Proceedings of the Workshop on NLP for Medicine and Biology associated with RANLP 2013, Hissar, Bulgaria, September 13, 2013 RANLP (Medicine and Biology) Guergana Savova, Kevin Bretonnel Cohen, Galia Angelova
2013	—	`conf`	Recognizing Sublanguages in Scientific Journal Articles through Closure Properties. BioNLP@ACL Irina P. Temnikova, Kevin Bretonnel Cohen
2013	Misc	`conf`	Session introduction. Pacific Symposium on Biocomputing Graciela Gonzalez, Kevin Bretonnel Cohen, Casey S. Greene, Udo Hahn, Maricel G. Kann, Robert Leaman, Nigam Shah, Jieping Ye
2012	J	`jnl`	A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinform. Karin Verspoor, Kevin Bretonnel Cohen, Arrick Lanfranchi, Colin Warner, Helen L. Johnson, Christophe Roeder, Jinho D. Choi, Christopher S. Funk, Yuriy Malenkiy, Miriam Eckert, Nianwen Xue, William A. Baumgartner Jr., Michael Bada, Martha Palmer, Lawrence E. Hunter
2012	J	`jnl`	BioCreative-2012 Virtual Issue. Database J. Biol. Databases Curation Cathy H. Wu, Cecilia N. Arighi, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Zhiyong Lu, Carolyn J. Mattingly, Alfonso Valencia, Thomas C. Wiegers, W. John Wilbur
2012	J	`jnl`	Mining the pharmacogenomics literature - a survey of the state of the art. Briefings Bioinform. Udo Hahn, Kevin Bretonnel Cohen, Yael Garten, Nigam H. Shah
2012	—	`ed.`	Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, BioNLP@HLT-NAACL Montrèal, Canada, June 8, 2012 BioNLP@HLT-NAACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Bonnie L. Webber, Jun'ichi Tsujii, John Pestian
2012	Misc	`conf`	Session introduction. Pacific Symposium on Biocomputing Kevin Bretonnel Cohen, Yael Garten, Nigam Shah, Udo Hahn
2011	J	`jnl`	Overview of the BioCreative III Workshop. BMC Bioinform. Cecilia N. Arighi, Zhiyong Lu, Martin Krallinger, Kevin Bretonnel Cohen, W. John Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H. Wu
2011	—	`ed.`	Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2011	Misc	`conf`	Workshop Introduction. Pacific Symposium on Biocomputing Kevin Bretonnel Cohen, Yael Garten, Udo Hahn, Nigam H. Shah
2010	J	`jnl`	Integrating text mining into high-throughput assay analysis. BMC Bioinform. Kevin Bretonnel Cohen
2009	—	`ed.`	Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009 BioNLP@HLT-NAACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2008	—	`ed.`	Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, BioNLP 2008, Columbus, Ohio, USA, June 19, 2008 BioNLP Dina Demner-Fushman, Sophia Ananiadou, Kevin Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2007	J	`jnl`	Frontiers of biomedical text mining: current progress. Briefings Bioinform. Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin Bretonnel Cohen
2006	—	`ed.`	Proceedings of the Workshop on Linking Natural Language and Biology, BioNLP@NAACL-HLT 2006, New York, NY, USA, June 8, 2006 BioNLP@NAACL-HLT Karin Verspoor, Kevin Bretonnel Cohen, Ben Goertzel, Inderjeet Mani