Kentaro Tomii

17 papers Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins.
J. Chem. Inf. Model.
Yuko Tsuchiya, Tomoki Yonezawa, Yu Yamamori, Hiroko Inoura, Masanori Osawa, Kazuyoshi Ikeda, Kentaro Tomii
2020 J jnl
DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment.
BMC Bioinform.
Hiroyuki Fukuda, Kentaro Tomii
2019 J jnl
Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences.
Bioinform.
Masashi Tsubaki, Kentaro Tomii, Jun Sese
2019 — ch.
Protein Properties.
Encyclopedia of Bioinformatics and Computational Biology (2)
Kentaro Tomii
2018 J jnl
Parallelization of MAFFT for large-scale multiple sequence alignments.
Bioinform.
Tsukasa Nakamura, Kazunori D. Yamada, Kentaro Tomii, Kazutaka Katoh
2017 J jnl
Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance.
BMC Bioinform.
Toshiyuki Oda, Kyungtaek Lim, Kentaro Tomii
2016 J jnl
Application of the MAFFT sequence alignment program to large data - reexamination of the usefulness of chained guide trees.
Bioinform.
Kazunori D. Yamada, Kentaro Tomii, Kazutaka Katoh
2015 J jnl
EzCatDB: the enzyme reaction database, 2015 update.
Nucleic Acids Res.
Nozomi Nagano, Naoko Nakayama, Kazuyoshi Ikeda, Masaru Fukuie, Kiyonobu Yokota, Takuo Doi, Tsuyoshi Kato, Kentaro Tomii
2015 J jnl
PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs.
Nucleic Acids Res.
Jun-Ichi Ito, Kazuyoshi Ikeda, Kazunori D. Yamada, Kenji Mizuguchi, Kentaro Tomii
2014 J jnl
Revisiting amino acid substitution matrices for identifying distantly related proteins.
Bioinform.
Kazunori D. Yamada, Kentaro Tomii
2012 J jnl
Convergent evolution in structural elements of proteins investigated using cross profile analysis.
BMC Bioinform.
Kentaro Tomii, Yoshito Sawada, Shinya Honda
2012 J jnl
PoSSuM: a database of similar protein-ligand binding and putative pockets.
Nucleic Acids Res.
Jun-Ichi Ito, Yasuo Tabei, Kana Shimizu, Koji Tsuda, Kentaro Tomii
2011 J jnl
SAHG, a comprehensive database of predicted structures of all human proteins.
Nucleic Acids Res.
Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota
2007 J jnl
Predicting mostly disordered proteins by using structure-unknown protein data.
BMC Bioinform.
Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Kentaro Tomii, Tamotsu Noguchi
2004 — conf
A New Variational Framework for Rigid-Body Alignment.
SSPR/SPR
Tsuyoshi Kato, Koji Tsuda, Kentaro Tomii, Kiyoshi Asai
2004 J jnl
FORTE: a profile-profile comparison tool for protein fold recognition.
Bioinform.
Kentaro Tomii, Yutaka Akiyama
1999 — ch.
Systematic Detection of Protein Structural Motifs.
Pattern Discovery in Biomolecular Data
Kentaro Tomii, Minoru Kanehisa