Kentaro Shimizu

57 papers A 3B 1Misc 3Journal 32Unranked 18

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	Feedback-AVPGAN: Feedback-guided generative adversarial network for generating antiviral peptides. J. Bioinform. Comput. Biol. Kano Hasegawa, Yoshitaka Moriwaki, Tohru Terada, Cao Wei, Kentaro Shimizu
2022	J	`jnl`	Prediction of protein mononucleotide binding sites using AlphaFold2 and machine learning. Comput. Biol. Chem. Shohei Yamaguchi, Haruka Nakashima, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu
2021	J	`jnl`	Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data. BMC Bioinform. Takayuki Osabe, Kentaro Shimizu, Koji Kadota
2021	J	`jnl`	EXPRORER: Rational Cosolvent Set Construction Method for Cosolvent Molecular Dynamics Using Large-Scale Computation. J. Chem. Inf. Model. Keisuke Yanagisawa, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu
2020	J	`jnl`	3D Object Detection Method Based on YOLO and K-Means for Image and Point Clouds. CoRR Xuanyu Yin, Yoko Sasaki, Weimin Wang, Kentaro Shimizu
2020	J	`jnl`	YOLO and K-Means Based 3D Object Detection Method on Image and Point Cloud. CoRR Xuanyu Yin, Yoko Sasaki, Weimin Wang, Kentaro Shimizu
2019	J	`jnl`	Identifying short disorder-to-order binding regions in disordered proteins with a deep convolutional neural network method. J. Bioinform. Comput. Biol. Chun Fang, Yoshitaka Moriwaki, Aikui Tian, Caihong Li, Kentaro Shimizu
2019	J	`jnl`	MoRFPred_en: Sequence-based prediction of MoRFs using an ensemble learning strategy. J. Bioinform. Comput. Biol. Chun Fang, Yoshitaka Moriwaki, Caihong Li, Kentaro Shimizu
2017	J	`jnl`	Development of a sugar-binding residue prediction system from protein sequences using support vector machine. Comput. Biol. Chem. Masaki Banno, Yusuke Komiyama, Cao Wei, Yuya Oku, Kokoro Ueki, Kazuya Sumikoshi, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
2016	—	`conf`	An effective system for managing biological data. BESC Qian Li, Zhenglu Yang, Wei Cao, Kentaro Shimizu
2016	J	`jnl`	Automatic generation of bioinformatics tools for predicting protein-ligand binding sites. Bioinform. Yusuke Komiyama, Masaki Banno, Kokoro Ueki, Gul Saad, Kentaro Shimizu
2016	J	`jnl`	Development of a prediction system for tail-anchored proteins. BMC Bioinform. Shunsuke Shigemitsu, Cao Wei, Tohru Terada, Kentaro Shimizu
2015	J	`jnl`	Evaluation of methods for differential expression analysis on multi-group RNA-seq count data. BMC Bioinform. Min Tang, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
2015	J	`jnl`	Tyrosine Kinase Ligand-Receptor Pair Prediction by Using Support Vector Machine. Adv. Bioinformatics Masayuki Yarimizu, Cao Wei, Yusuke Komiyama, Kokoro Ueki, Shugo Nakamura, Kazuya Sumikoshi, Tohru Terada, Kentaro Shimizu
2014	J	`jnl`	Coarse-grained molecular dynamics simulations of protein-ligand binding. J. Comput. Chem. Tatsuki Negami, Kentaro Shimizu, Tohru Terada
2013	Misc	`conf`	Office in the cloud: Web-based cloud platform for Telcos services. ICIN Masafumi Suzuki, Kentaro Shimizu, Shinyo Muto, Naoki Uchida
2013	J	`jnl`	TCC: an R package for comparing tag count data with robust normalization strategies. BMC Bioinform. Jianqiang Sun, Tomoaki Nishiyama, Kentaro Shimizu, Koji Kadota
2012	J	`jnl`	A normalization strategy for comparing tag count data. Algorithms Mol. Biol. Koji Kadota, Tomoaki Nishiyama, Kentaro Shimizu
2012	Misc	`conf`	Office on Demand: New cloud service platform for carrier. ICIN Kentaro Shimizu, Seiji Nishinaga, Shinyo Muto, Naoki Uchida
2011	J	`jnl`	Evaluating methods for ranking differentially expressed genes applied to MicroArray Quality Control data. BMC Bioinform. Koji Kadota, Kentaro Shimizu
2010	—	`conf`	A Self-organizing State Space Approach to Inferring Time-Varying Causalities between Regulatory Proteins. ITBAM Osamu Hirose, Kentaro Shimizu
2010	J	`jnl`	Multicanonical J. Comput. Chem. Ryota Jono, Yuusuke Watanabe, Kentaro Shimizu, Tohru Terada
2010	J	`jnl`	Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines. Adv. Bioinformatics Seizi Someya, Masanori Kakuta, Mizuki Morita, Kazuya Sumikoshi, Cao Wei, Ge Zhenyi, Osamu Hirose, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
2009	—	`conf`	Computational Protocol for Screening GPI-anchored Proteins. BICoB Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu
2009	J	`jnl`	Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity. Algorithms Mol. Biol. Koji Kadota, Yuji Nakai, Kentaro Shimizu
2008	J	`jnl`	A weighted average difference method for detecting differentially expressed genes from microarray data. Algorithms Mol. Biol. Koji Kadota, Yuji Nakai, Kentaro Shimizu
2008	J	`jnl`	Prediction of Protein-Protein Interaction Sites Using Only Sequence Information and Using Both Sequence and Structural Information. Inf. Media Technol. Masanori Kakuta, Shugo Nakamura, Kentaro Shimizu
2007	—	`conf`	High-Density Surface Reconstruction of Fine Arts and Documents for Complete Reproduction and Counterfeit Detection. ICNSC Junta Doi, Kentaro Shimizu, Masakazu Sekijima
2006	—	`conf`	High-Density Scanning Combined with Digital Image of Real Objects for Complete Reproduction of Cultural Artifacts. MFI Junta Doi, Kentaro Shimizu, Wataru Sato
2006	—	`conf`	High-Precision Geometric Modeling of 3D Artifacts for Virtual Restoration. VECIMS Junta Doi, Kentaro Shimizu, Wataru Sato, Shinji Morishita
2006	—	`conf`	Identification of GPI-(like)-Anchored Proteins by Using SVM. IMSCCS (2) Cao Wei, Kentaro Shimizu
2006	—	`conf`	Insight of the Signal Motif of GPI-(like)-anchored Proteins by using SVM. BIOCOMP Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
2006	J	`jnl`	ROKU: a novel method for identification of tissue-specific genes. BMC Bioinform. Koji Kadota, Jiazhen Ye, Yuji Nakai, Tohru Terada, Kentaro Shimizu
2006	Misc	`conf`	Reuse of reconstructed model of human skull for anthropological and anthropoid morphological model estimation. IRI Junta Doi, Kentaro Shimizu, Masahiko Hoshi
2004	J	`jnl`	Distributed Shared Arrays: Portable Shared-Memory Programming Interface for Multiple Computer Systems. Clust. Comput. Akira Nomoto, Yasuo Watanabe, Wataru Kaneko, Shugo Nakamura, Kentaro Shimizu
2004	—	`conf`	Programming Environment Based on Distributed Shared Arrays for High-Performance Scientific Computing. SAINT Workshops Akira Nomoto, Wataru Kaneko, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
2003	—	`conf`	Design and Implementation of a Parallel Programming Environment Based on Distributed Shared Arrays. ISHPC Wataru Kaneko, Akira Nomoto, Yasuo Watanabe, Shugo Nakamura, Kentaro Shimizu
2003	—	`conf`	Preemptive Resource Management: Defending against Resource Monopolizing DoS. Applied Informatics Wataru Kaneko, Kenji Kono, Kentaro Shimizu
2002	—	`conf`	Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment. IASTED PDCS Masakazu Sekijima, Shinya Takasaki, Shugo Nakamura, Kentaro Shimizu
2002	J	`jnl`	New method for parallel computation of Hessian matrix of conformational energy function in internal coordinates. J. Comput. Chem. Shugo Nakamura, Daisuke Kyono, Mitsunori Ikeguchi, Kentaro Shimizu
2001	J	`jnl`	Access route control by an extended key/lock scheme. Comput. Syst. Sci. Eng. Soichi Shigeta, Kentaro Shimizu, Masahiro Sowa
1999	J	`jnl`	Prediction of protein structure classes and secondary structures by means of hidden Markov models. Syst. Comput. Jpn. Hiroshi Yoshikawa, Mitsunori Ikeguchi, Shugo Nakamura, Kentaro Shimizu, Junta Doi
1998	J	`jnl`	Parallel algorithm for efficient calculation of second derivatives of conformational energy function in internal coordinates. J. Comput. Chem. Shugo Nakamura, Mitsunori Ikeguchi, Kentaro Shimizu
1998	—	`conf`	Time-of-Reduction-Recovery Predicton in Neural Networks of Variable Topology to Improve Enzyme Classification. NC Yasuo Kuhara, Kentaro Shimizu, Junta Doi
1995	—	`conf`	A performance comparison of adaptive and static load balancing in heterogeneous distributed systems. Annual Simulation Symposium Yongbing Zhang, Katsuya Hakozaki, Hisao Kameda, Kentaro Shimizu
1995	J	`jnl`	Flow Control and Routing Algorithms in WAPSN. Comput. Commun. R. C. Betini, Hisao Kameda, Kentaro Shimizu
1994	J	`jnl`	A Paraellel and Nonblocking Updating Mechanism for Replicated Directory Files in Distributed Systems. J. Parallel Distributed Comput. Xiaohua Jia, Kentaro Shimizu, Mamoru Maekawa
1994	B	`conf`	Adaptive Bidding Load Balancing Algorithms in Heterogeneous Distributed Systems. MASCOTS Yongbing Zhang, Hisao Kameda, Kentaro Shimizu
1992	A	`conf`	Improving the Reliability of Name Resolution Mechanism in Distributed Operating Systems. ICDCS Pradeep Kumar Sinha, Mamoru Maekawa, Kentaro Shimizu
1991	—	`conf`	Flexible User-Definable Memory Coherence Scheme in Distributed Shared Memory of GALAXY. EDMCC Pradeep Kumar Sinha, Hyo Ashihara, Kentaro Shimizu, Mamoru Maekawa
1991	—	`conf`	Process Migration in the GALAXY Distributed Operating System. IPPS Pradeep Kumar Sinha, Kyu Sung Park, Xiaohua Jia, Kentaro Shimizu, Mamoru Maekawa
1991	J	`jnl`	The Galaxy Distributed Operating System. Computer Pradeep Kumar Sinha, Mamoru Maekawa, Kentaro Shimizu, Xiaohua Jia, Hyo Ashihara, Naoki Utsunomiya, Kyu Sung Park, Hirohiko Nakano
1990	A	`conf`	Highly Concurrent Directory Management in the Galaxy Distributed System. ICDCS Xiaohua Jia, Hirohiko Nakano, Kentaro Shimizu, Mamoru Maekawa
1989	J	`jnl`	CPC (Cyclic Pipeline Computer) - An Architecture Suited for Josephson and Pipelined-Memory Machines. IEEE Trans. Computers Kentaro Shimizu, Eiichi Goto, Shuichi Ichikawa
1988	A	`conf`	Hierarchical Object Groups in Distributed Operating Systems. ICDCS Kentaro Shimizu, Mamoru Maekawa, Jun Hamano
1984	—	`conf`	A Portable Logic Simulation System for Development of FLATS Machine. RIMS Symposia on Software Science and Engineering Kentaro Shimizu
1982	—	`conf`	Design of a Lisp Machine - FLATS. Symposium on LISP and Functional Programming Eiichi Goto, Takashi Soma, N. Inada, Tetsuo Ida, Masanori Idesawa, Kei Hiraki, M. Suzuki, Kentaro Shimizu, B. Philipov