Kenneth P. Nephew

18 papers Misc 1Journal 12Unranked 5
YearRankTypeTitle / Venue / Authors
2016 J jnl
Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines.
BMC Syst. Biol.
Heejoon Chae, Sangseon Lee, Kenneth P. Nephew, Sun Kim
2015 J jnl
BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data.
Bioinform.
Heejoon Chae, SungMin Rhee, Kenneth P. Nephew, Sun Kim
2013 J jnl
Genome-Wide Analysis and Modeling of DNA methylation susceptibility in 30 Breast Cancer Cell Lines by using CPG Flanking Sequences.
J. Bioinform. Comput. Biol.
Jaehyun An, Kwangsoo Kim, SungMin Rhee, Heejoon Chae, Kenneth P. Nephew, Sun Kim
2012 J jnl
A dynamic time order network for time-series gene expression data analysis.
BMC Syst. Biol.
Pengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Hui-Ming Huang, Kenneth P. Nephew, Yunlong Liu, Lang Li
2012 J jnl
A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters.
BMC Bioinform.
Youngik Yang, Kenneth P. Nephew, Sun Kim
2011 J jnl
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.
BMC Syst. Biol.
Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li
2011 — conf
An ERα/modulator regulatory network in the breast cancer cells.
GENSiPS
Heng-Yi Wu, Yu Wang, Pengyue Zheng, Guanglong Jiang, Yunlong Liu, Tim Hui-Ming Huang, Kenneth P. Nephew, Lang Li
2011 — conf
BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis.
BIBM
Hyungro Lee, Youngik Yang, Heejoon Chae, Seungyoon Nam, Donghoon Choi, Patanachai Tangchaisin, Chathura Herath, Suresh Marru, Kenneth P. Nephew, Sun Kim
2011 — conf
Empirical bayes model comparisons for differential methylation analysis.
GENSiPS
Mingxiang Teng, Yadong Wang, Yunlong Liu, Seongho Kim, Curtis Balch, Kenneth P. Nephew, Lang Li
2011 — conf
Transitioning BioVLab cloud workbench to a science gateway.
TG
Suresh Marru, Heejoon Chae, Patanachai Tangchaisin, Sun Kim, Marlon E. Pierce, Kenneth P. Nephew
2009 J jnl
An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.
BMC Syst. Biol.
Huaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri
2009 J jnl
Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance.
Bioinform.
Fuxiao Xin, Meng Li, Curtis Balch, Michael Thomson, Meiyun Fan, Yunlong Liu, Scott M. Hammond, Sun Kim, Kenneth P. Nephew
2009 J jnl
MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression.
Nucleic Acids Res.
Seungyoon Nam, Meng Li, Kwangmin Choi, Curtis Balch, Sun Kim, Kenneth P. Nephew
2008 J jnl
Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells.
Bioinform.
Meng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim
2008 Misc conf
Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences.
Pacific Symposium on Biocomputing
Sun Kim, Meng Li, Hyun-il Henry Paik, Kenneth P. Nephew, Huidong Shi, Robin Kramer, Dong Xu, Tim Hui-Ming Huang
2007 — conf
Identification of Transcription Factor and microRNA Binding Sites from Array-derived Gene Expression Data.
BIOCOMP
Guohua Wang, Xin Wang, Lang Li, Kenneth P. Nephew, Howard J. Edenberg, Feng Zhou, Yunlong Liu
2006 J jnl
A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
Bioinform.
Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew
2005 J jnl
Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System.
J. Comput. Biol.
Lang Li, Huidong Shi, Constantin T. Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew