Kengo Kinoshita

35 papers Journal 32Unranked 3

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Development of AI Models for Early Prediction of Preterm Birth. MedInfo Satoshi Mizuno, Satoshi Nagaie, Gen Tamiya, Shinichi Kuriyama, Taku Obara, Mami Ishikuro, Hiroshi Tanaka, Kengo Kinoshita, Junichi Sugawara, Masayuki Yamamoto, Nobuo Yaegashi, Masatoshi Saito, Soichi Ogishima
2023	J	`jnl`	COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations. Nucleic Acids Res. Takeshi Obayashi, Shun Kodate, Himiko Hibara, Yuki Kagaya, Kengo Kinoshita
2023	—	`conf`	Statistical Modeling of Subjective Sleep Quality. EMBC Siwalee Choilek, Akihiro Karashima, Ikuko N. Motoike, Norihiro Katayama, Kengo Kinoshita, Mitsuyuki Nakao
2021	J	`jnl`	jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population. Nucleic Acids Res. Shu Tadaka, Eiji Hishinuma, Shohei Komaki, Ikuko N. Motoike, Junko Kawashima, Daisuke Saigusa, Jin Inoue, Jun Takayama, Yasunobu Okamura, Yuichi Aoki, Matsuyuki Shirota, Akihito Otsuki, Fumiki Katsuoka, Atsushi Shimizu, Gen Tamiya, Seizo Koshiba, Makoto Sasaki, Masayuki Yamamoto, Kengo Kinoshita
2020	J	`jnl`	A genotype imputation method for de-identified haplotype reference information by using recurrent neural network. PLoS Comput. Biol. Kaname Kojima, Shu Tadaka, Fumiki Katsuoka, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita
2020	J	`jnl`	Theoretical characterisation of strand cross-correlation in ChIP-seq. BMC Bioinform. Hayato Anzawa, Hitoshi Yamagata, Kengo Kinoshita
2019	J	`jnl`	COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference. Nucleic Acids Res. Takeshi Obayashi, Yuki Kagaya, Yuichi Aoki, Shu Tadaka, Kengo Kinoshita
2019	—	`conf`	Relationship between Dynamics of Physiological Signals and Subjective Quality of Life and Its Lifestyle Dependency. EMBC Ryota Amano, Akihiro Karashima, Ikuko N. Motoike, Norihiro Katayama, Kengo Kinoshita, Mitsuyuki Nakao
2018	J	`jnl`	De novo profile generation based on sequence context specificity with the long short-term memory network. BMC Bioinform. Kazunori D. Yamada, Kengo Kinoshita
2018	J	`jnl`	Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data. BMC Bioinform. Yasunobu Okamura, Kengo Kinoshita
2018	J	`jnl`	jMorp: Japanese Multi Omics Reference Panel. Nucleic Acids Res. Shu Tadaka, Daisuke Saigusa, Ikuko N. Motoike, Jin Inoue, Yuichi Aoki, Matsuyuki Shirota, Seizo Koshiba, Masayuki Yamamoto, Kengo Kinoshita
2017	J	`jnl`	Security controls in an integrated Biobank to protect privacy in data sharing: rationale and study design. BMC Medical Informatics Decis. Mak. Takako Takai-Igarashi, Kengo Kinoshita, Masao Nagasaki, Soichi Ogishima, Naoki Nakamura, Sachiko Nagase, Satoshi Nagaie, Tomo Saito, Fuji Nagami, Naoko Minegishi, Yoichi Suzuki, Kichiya Suzuki, Hiroaki Hashizume, Shinichi Kuriyama, Atsushi Hozawa, Nobuo Yaegashi, Shigeo Kure, Gen Tamiya, Yoshio Kawaguchi, Hiroshi Tanaka, Masayuki Yamamoto
2016	J	`jnl`	Discrepancies between human DNA, mRNA and protein reference sequences and their relation to single nucleotide variants in the human population. Database J. Biol. Databases Curation Matsuyuki Shirota, Kengo Kinoshita
2016	J	`jnl`	NCMine: Core-peripheral based functional module detection using near-clique mining. Bioinform. Shu Tadaka, Kengo Kinoshita
2015	J	`jnl`	COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Nucleic Acids Res. Yasunobu Okamura, Yuichi Aoki, Takeshi Obayashi, Shu Tadaka, Satoshi Ito, Takafumi Narise, Kengo Kinoshita
2014	J	`jnl`	GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes. BMC Bioinform. Kota Kasahara, Kengo Kinoshita
2013	J	`jnl`	COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals. Nucleic Acids Res. Takeshi Obayashi, Yasunobu Okamura, Satoshi Ito, Shu Tadaka, Ikuko N. Motoike, Kengo Kinoshita
2013	J	`jnl`	Comprehensive Classification and Diversity Assessment of Atomic Contacts in Protein-Small Ligand Interactions. J. Chem. Inf. Model. Kota Kasahara, Matsuyuki Shirota, Kengo Kinoshita
2011	J	`jnl`	COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Res. Takeshi Obayashi, Kengo Kinoshita
2011	J	`jnl`	SAHG, a comprehensive database of predicted structures of all human proteins. Nucleic Acids Res. Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota
2010	J	`jnl`	Ligand-binding site prediction of proteins based on known fragment-fragment interactions. Bioinform. Kota Kasahara, Kengo Kinoshita, Toshihisa Takagi
2009	J	`jnl`	ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res. Takeshi Obayashi, Shinpei Hayashi, Motoshi Saeki, Hiroyuki Ohta, Kengo Kinoshita
2009	J	`jnl`	Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. Bioinform. Kengo Kinoshita, Takeshi Obayashi
2009	J	`jnl`	PiSite: a database of protein interaction sites using multiple binding states in the PDB. Nucleic Acids Res. Miho Higurashi, Takashi Ishida, Kengo Kinoshita
2008	J	`jnl`	COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res. Takeshi Obayashi, Shinpei Hayashi, Masayuki Shibaoka, Motoshi Saeki, Hiroyuki Ohta, Kengo Kinoshita
2008	J	`jnl`	Prediction of disordered regions in proteins based on the meta approach. Bioinform. Takashi Ishida, Kengo Kinoshita
2008	J	`jnl`	Protein structure databases with new web services for structural biology and biomedical research. Briefings Bioinform. Daron M. Standley, Akira R. Kinjo, Kengo Kinoshita, Haruki Nakamura
2007	J	`jnl`	ATTED-II: a database of co-expressed genes and Nucleic Acids Res. Takeshi Obayashi, Kengo Kinoshita, Kenta Nakai, Masayuki Shibaoka, Shinpei Hayashi, Motoshi Saeki, Daisuke Shibata, Kazuki Saito, Hiroyuki Ohta
2007	J	`jnl`	PrDOS: prediction of disordered protein regions from amino acid sequence. Nucleic Acids Res. Takashi Ishida, Kengo Kinoshita
2007	J	`jnl`	eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape. Nucleic Acids Res. Kengo Kinoshita, Yoichi Murakami, Haruki Nakamura
2006	J	`jnl`	DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. Nicolas Sierro, Takehiro Kusakabe, Keun-Joon Park, Riu Yamashita, Kengo Kinoshita, Kenta Nakai
2006	J	`jnl`	PreBI: prediction of biological interfaces of proteins in crystals. Nucleic Acids Res. Yuko Tsuchiya, Kengo Kinoshita, Nobutoshi Ito, Haruki Nakamura
2005	J	`jnl`	P-cats: prediction of catalytic residues in proteins from their tertiary structures. Bioinform. Kengo Kinoshita, Motonori Ota
2005	J	`jnl`	PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces. Bioinform. Yuko Tsuchiya, Kengo Kinoshita, Haruki Nakamura
2004	J	`jnl`	eF-site and PDBjViewer: database and viewer for protein functional sites. Bioinform. Kengo Kinoshita, Haruki Nakamura