Keith A. Crandall

17 papers A 1C 3Journal 13
YearRankTypeTitle / Venue / Authors
2022 J jnl
Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative.
J. Am. Medical Informatics Assoc.
Emily R. Pfaff, Andrew T. Girvin, Davera Gabriel, Kristin Kostka, Michele Morris, Matvey B. Palchuk, Harold P. Lehmann, Benjamin R. C. Amor, Mark Bissell, Katie R. Bradwell, Sigfried Gold, Stephanie S. Hong, Johanna Loomba, Amin Manna, Julie A. McMurry, Emily Niehaus, Nabeel Qureshi, Anita Walden, Xiaohan Tanner Zhang, Richard L. Zhu, Richard A. Moffitt, Christopher G. Chute, William G. Adams, Shaymaa Al-Shukri, Alfred Anzalone, Ahmad Baghal, Tellen D. Bennett, Elmer V. Bernstam, Mark M. Bissell, Brian Bush, Thomas R. Campion Jr., Victor Castro, Jack Chang, Deepa D. Chaudhari, Wenjin Chen, San Chu, James J. Cimino, Keith A. Crandall, Mark Crooks, Sara J. Deakyne Davies, John Dipalazzo, David A. Dorr, Dan Eckrich, Sarah E. Eltinge, Daniel G. Fort, George Golovko, Snehil Gupta, Melissa A. Haendel, Janos G. Hajagos, David A. Hanauer, Brett M. Harnett, Ronald Horswell, Nancy Huang, Steven G. Johnson, Michael Kahn, Kamil Khanipov, Curtis Kieler, Katherine Ruiz De Luzuriaga, Sarah E. Maidlow, Ashley Martinez, Jomol Mathew, James C. McClay, Gabriel McMahan, Brian Melancon, Stéphane M. Meystre, Lucio Miele, Hiroki Morizono, Ray Pablo, Lav P. Patel, Jimmy Phuong, Daniel J. Popham, Claudia P. Pulgarin, Carlos Santos, Indra Neil Sarkar, Nancy Sazo, Soko Setoguchi, Selvin Soby, Sirisha Surampalli, Christine Suver, Uma Maheswara Reddy Vangala, Shyam Visweswaran, James von Oehsen, Kellie M. Walters, Laura K. Wiley, David A. Williams, Adrian H. Zai
2021 J jnl
COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model.
Briefings Bioinform.
Nikhita Gogate, Daniel Lyman, Amanda Bell, Edmund Cauley, Keith A. Crandall, Ashia Joseph, Robel Y. Kahsay, Darren A. Natale, Lynn M. Schriml, Sabyasach Sen, Raja Mazumder
2021 J jnl
Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank.
J. Am. Medical Informatics Assoc.
Alexander V. Alekseyenko, Bashir Hamidi, Trevor D. Faith, Keith A. Crandall, Jennifer G. Powers, Christopher Metts, James E. Madory, Steven L. Carroll, Jihad S. Obeid, Leslie A. Lenert
2021 J jnl
Omics community detection using multi-resolution clustering.
Bioinform.
Ali Rahnavard, Suvo Chatterjee, Bahar Sayoldin, Keith A. Crandall, Fasil Tekola-Ayele, Himel Mallick
2020 J jnl
ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data.
Bioinform.
Liam F. Spurr, Nawaf Alomran, Pavlos Bousounis, Dacian Reece-Stremtan, N. M. Prashant, Hongyu Liu, Piotr Slowinski, Muzi Li, Qianqian Zhang, Justin Sein, Gabriel Asher, Keith A. Crandall, Krasimira Tsaneva-Atanasova, Anelia Horvath
2019 J jnl
Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression.
PLoS Comput. Biol.
Matthew L. Bendall, Miguel de Mulder, Luis Pedro Iñiguez, Aarón Lecanda-Sánchez, Marcos Pérez-Losada, Mario A. Ostrowski, R. Brad Jones, Lubbertus C. F. Mulder, Gustavo Reyes-Terán, Keith A. Crandall, Christopher E. Ormsby, Douglas F. Nixon
2017 C conf
Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction.
BIBE
M. Stanley Fujimoto, Cole A. Lyman, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement
2017 C conf
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs.
BIBE
Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement
2017 J jnl
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs.
CoRR
Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement
2014 J jnl
Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data.
BMC Bioinform.
Allyson L. Byrd, Joseph F. Perez-Rogers, Solaiappan Manimaran, Eduardo Castro-Nallar, Ian Toma, Tim McCaffrey, Marc Siegel, Gary Benson, Keith A. Crandall, William Johnson
2014 J jnl
Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
BMC Bioinform.
Daniel I. Speiser, M. Sabrina Pankey, Alexander K. Zaharoff, Barbara A. Battelle, Heather D. Bracken-Grissom, Jesse W. Breinholt, Seth M. Bybee, Thomas W. Cronin, Anders Garm, Annie R. Lindgren, Nipam H. Patel, Megan L. Porter, Meredith E. Protas, Ajna S. Rivera, Jeanne M. Serb, Kirk S. Zigler, Keith A. Crandall, Todd H. Oakley
2012 J jnl
Phylogenetic search through partial tree mixing.
BMC Bioinform.
Kenneth Sundberg, Mark J. Clement, Quinn Snell, Dan Ventura, Michael Whiting, Keith A. Crandall
2008 C ed.
Algorithms in Bioinformatics, 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings
WABI
Keith A. Crandall, Jens Lagergren
2006 J jnl
Jumpstarting phylogenetic analysis.
Int. J. Bioinform. Res. Appl.
Jesse Mecham, Mark J. Clement, Quinn Snell, Todd Freestone, Kevin D. Seppi, Keith A. Crandall
2003 J jnl
TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees.
Bioinform.
Steve Woolley, Justin Johnson, Matthew J. Smith, Keith A. Crandall, David A. McClellan
2002 A conf
TCS: Estimating Gene Genealogies.
IPDPS
Mark J. Clement, Quinn Snell, Peter Walker, David Posada, Keith A. Crandall
1998 J jnl
MODELTEST: testing the model of DNA substitution.
Bioinform.
David Posada, Keith A. Crandall