Kei-Hoi Cheung

75 papers A* 1B 1C 3Misc 8Journal 48Unranked 11
YearRankTypeTitle / Venue / Authors
2024 J jnl
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics.
J. Biomed. Semant.
Sarah Mullin, Robert A. McDougal, Kei-Hoi Cheung, Halil Kilicoglu, Amanda Beck, Caroline J. Zeiss
2023 J jnl
From Data to Wisdom: Biomedical Knowledge Graphs for Real-World Data Insights.
J. Medical Syst.
Katrin Hänsel, Sarah Dudgeon, Kei-Hoi Cheung, Thomas J. S. Durant, Wade L. Schulz
2021 J jnl
LinkedImm: a linked data graph database for integrating immunological data.
BMC Bioinform.
Syed Ahmad Chan Bukhari, Shrikant Pawar, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung
2020 J jnl
A structured model for immune exposures.
Database J. Biol. Databases Curation
Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters
2019 — conf
A linked data graph approach to integration of immunological data.
BIBM
Syed Ahmad Chan Bukhari, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung
2019 J jnl
Reporting and connecting cell type names and gating definitions through ontologies.
BMC Bioinform.
James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters
2018 J jnl
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata.
BMC Bioinform.
Syed Ahmad Chan Bukhari, Marcos Martínez Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, John B. Graybeal, Mark A. Musen, Kei-Hoi Cheung, Steven H. Kleinstein
2018 — conf
CEDAR: Semantic Web Technology to Support Open Science.
WWW (Companion Volume)
Mark A. Musen, Susanna-Assunta Sansone, Kei-Hoi Cheung, Steven H. Kleinstein, Morgan Crafts, Stephan C. Schürer, John B. Graybeal
2018 — conf
Formalizing the Representation of Immune Exposures for Human Immunology Studies.
ICBO
Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein
2017 — conf
A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling.
CRI
Roxanne Wadia, Mark A. Shifman, Forrest W. Levin, Luis N. Marenco, Cynthia Brandt, Kei-Hoi Cheung, Tamar H. Taddei, Michael Krauthammer
2016 J jnl
Extending gene ontology in the context of extracellular RNA and vesicle communication.
J. Biomed. Semant.
Kei-Hoi Cheung, Shivakumar Keerthikumar, Paola Roncaglia, Sai Lakshmi Subramanian, Matthew E. Roth, Monisha Samuel, Sushma Anand, Lahiru Gangoda, Stephen Gould, Roger Alexander, David Galas, Mark B. Gerstein, Andrew F. Hill, Robert R. Kitchen, Jan Lötvall, Tushar Patel
2015 J jnl
The center for expanded data annotation and retrieval.
J. Am. Medical Informatics Assoc.
Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser
2015 J jnl
YPED: An Integrated Bioinformatics Suite and Database for Mass Spectrometry-based Proteomics Research.
Genom. Proteom. Bioinform.
Christopher M. Colangelo, Mark A. Shifman, Kei-Hoi Cheung, Kathryn L. Stone, Nicholas Carriero, Erol E. Gulcicek, TuKiet T. Lam, Terence Wu, Robert D. Bjornson, Can Bruce, Angus C. Nairn, Jesse Rinehart, Perry L. Miller, Kenneth R. Williams
2014 J jnl
A graph theoretic approach to utilizing protein structure to identify non-random somatic mutations.
BMC Bioinform.
Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Yorgo Modis, Hongyu Zhao
2014 J jnl
A spatial simulation approach to account for protein structure when identifying non-random somatic mutations.
BMC Bioinform.
Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Robert D. Bjornson, Daniel Zelterman, Yorgo Modis, Hongyu Zhao
2014 — ch.
SenseLab: Integration of Multidisciplinary Neuroscience Data.
Encyclopedia of Computational Neuroscience
Gordon M. Shepherd, Thomas M. Morse, Luis N. Marenco, Kei-Hoi Cheung, Ted Carnevale, Michele Migliore, Robert A. McDougal, Michael L. Hines, Perry L. Miller
2013 J jnl
Utilizing protein structure to identify non-random somatic mutations.
BMC Bioinform.
Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Yorgo Modis, Hongyu Zhao
2012 J jnl
A semantic web framework to integrate cancer omics data with biological knowledge.
BMC Bioinform.
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
2011 J jnl
Enhancing phylogeography by improving geographical information from GenBank.
J. Biomed. Informatics
Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez
2010 J jnl
Analysis Of Cancer Omics Data In A Semantic Web Framework
CoRR
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
2010 — conf
Analysis of Cancer Omics Data In A Semantic Web Framework.
SWAT4LS
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
2010 — conf
Provenance of Microarray Experiments for a Better Understanding of Experiment Results.
SWPM@ISWC
Helena F. Deus, Jun Zhao, Satya S. Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M. Scott Marshall, Kei-Hoi Cheung
2010 J jnl
Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience.
Artif. Intell. Medicine
Matthias Samwald, Huajun Chen, Alan Ruttenberg, Ernest Lim, Luis N. Marenco, Perry L. Miller, Gordon M. Shepherd, Kei-Hoi Cheung
2010 — book
Semantic e-Science
Semantic e-Science
Huajun Chen, Yimin Wang, Kei-Hoi Cheung
2010 J jnl
Using semantic web rules to reason on an ontology of pseudogenes.
Bioinform.
Matthew Holford, Ekta Khurana, Kei-Hoi Cheung, Mark Gerstein
2009 J jnl
A journey to Semantic Web query federation in the life sciences.
BMC Bioinform.
Kei-Hoi Cheung, H. Robert Frost, M. Scott Marshall, Eric Prud'hommeaux, Matthias Samwald, Jun Zhao, Adrian Paschke
2009 J jnl
Approaches to neuroscience data integration.
Briefings Bioinform.
Kei-Hoi Cheung, Ernest Lim, Matthias Samwald, Huajun Chen, Luis N. Marenco, Matthew Holford, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller
2009 J jnl
Bringing Web 2.0 to bioinformatics.
Briefings Bioinform.
Zhang Zhang, Kei-Hoi Cheung, Jeffrey P. Townsend
2009 — conf
Entrez Neuron RDFa: A Pragmatic Semantic Web Application for Data Integration in Neuroscience Research.
MIE
Matthias Samwald, Ernest Lim, Peter Masiar, Luis N. Marenco, Huajun Chen, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung
2009 — conf
Linking Open Drug Data.
I-SEMANTICS
Anja Jentzsch, Jun Zhao, Oktie Hassanzadeh, Kei-Hoi Cheung, Matthias Samwald, Bo Andersson
2009 J jnl
Pseudofam: the pseudogene families database.
Nucleic Acids Res.
Hugo Y. K. Lam, Ekta Khurana, Gang Fang, Philip Cayting, Nicholas Carriero, Kei-Hoi Cheung, Mark B. Gerstein
2009 J jnl
Semantic Web for Health Care and Life Sciences: a review of the state of the art.
Briefings Bioinform.
Kei-Hoi Cheung, Eric Prud'hommeaux, Yimin Wang, Susie Stephens
2008 J jnl
Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques.
J. Am. Medical Informatics Assoc.
Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung
2008 J jnl
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0.
J. Biomed. Informatics
Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch
2008 A* conf
Report on semantic web for health care and life sciences workshop.
WWW
Huajun Chen, Kei-Hoi Cheung, Michel Dumontier, Eric Prud'hommeaux, Alan Ruttenberg, Susie Stephens, Yimin Wang
2008 J jnl
Semantic mashup of biomedical data.
J. Biomed. Informatics
Kei-Hoi Cheung, Vipul Kashyap, Joanne Luciano, Huajun Chen, Yimin Wang, Susie Stephens
2007 J jnl
Advancing translational research with the Semantic Web.
BMC Bioinform.
Alan Ruttenberg, Tim Clark, William J. Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn T. Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei-Hoi Cheung
2007 J jnl
AlzPharm: integration of neurodegeneration data using RDF.
BMC Bioinform.
Hugo Y. K. Lam, Luis N. Marenco, Tim Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, Gwendolyn T. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei-Hoi Cheung
2007 J jnl
An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective.
J. Biomed. Informatics
Mark Gerstein, Dov Greenbaum, Kei-Hoi Cheung, Perry L. Miller
2007 J jnl
Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics.
Bioinform.
Andrew K. Smith, Kei-Hoi Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein
2007 J jnl
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.
BMC Bioinform.
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Martin H. Schultz, Mark Gerstein
2007 — ch.
Ontology-Based Data Integration For Biomedical Research.
The Semantic Web: Real-World Applications from Industry
Vipul Kashyap, Kei-Hoi Cheung, Donald Doherty, Matthias Samwald, M. Scott Marshall, Joanne Luciano, Susie Stephens, Ivan Herman, Raymond Hookway
2007 J jnl
SenseLab: new developments in disseminating neuroscience information.
Briefings Bioinform.
Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd
2006 J jnl
A semantic web approach to biological pathway data reasoning and integration.
J. Web Semant.
Kei-Hoi Cheung, Peishen Qi, David Tuck, Michael Krauthammer
2006 Misc conf
SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services.
Pacific Symposium on Biocomputing
Kevin Y. Yip, Peishen Qi, Martin H. Schultz, David W. Cheung, Kei-Hoi Cheung
2006 Misc conf
Using Web Ontology Language to Integrate Heterogeneous Databases in the Neurosciences.
AMIA
Hugo Y. K. Lam, Luis N. Marenco, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung
2005 J jnl
Case Report: A High Productivity/Low Maintenance Approach to High-performance Computation for Biomedicine: Four Case Studies.
J. Am. Medical Informatics Assoc.
Nicholas Carriero, Michael V. Osier, Kei-Hoi Cheung, Perry L. Miller, Mark Gerstein, Hongyu Zhao, Baolin Wu, Scott Rifkin, Joseph T. Chang, Heping Zhang, Kevin P. White, Kenneth R. Williams, Martin H. Schultz
2005 Misc conf
YPED: A Proteomics Database for Protein Expression Analysis.
AMIA
Mark A. Shifman, Kexin Sun, Christopher M. Colangelo, Kei-Hoi Cheung, Perry L. Miller, Kenneth R. Williams
2005 — conf
YeastHub: a semantic web use case for integrating data in the life sciences domain.
ISMB (Supplement of Bioinformatics)
Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein
2004 — conf
A XML-Based Approach to Integrating Heterogeneous Yeast Genome Data.
METMBS
Kei-Hoi Cheung, Deyun Pan, Andrew K. Smith, Michael R. Seringhaus, Shawn M. Douglas, Mark Gerstein
2004 J jnl
A web services choreography scenario for interoperating bioinformatics applications.
BMC Bioinform.
Remko de Knikker, Youjun Guo, Jin-Long Li, Albert K. H. Kwan, Kevin Y. Yip, David W. Cheung, Kei-Hoi Cheung
2004 J jnl
Handling multiple testing while interpreting microarrays with the Gene Ontology Database.
BMC Bioinform.
Michael V. Osier, Hongyu Zhao, Kei-Hoi Cheung
2004 C conf
Identifying Projected Clusters from Gene Expression Profiles.
BIBE
Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung
2004 J jnl
Identifying projected clusters from gene expression profiles.
J. Biomed. Informatics
Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung
2004 J jnl
KARMA: a web server application for comparing and annotating heterogeneous microarray platforms.
Nucleic Acids Res.
Kei-Hoi Cheung, Janet Hager, Deyun Pan, Ranjana Srivastava, Shrikant M. Mane, Yuli Li, Perry L. Miller, Kenneth R. Williams
2003 J jnl
ALFRED: the ALelle FREquency Database. Update.
Nucleic Acids Res.
Haseena Rajeevan, Michael V. Osier, Kei-Hoi Cheung, H. Deng, L. Druskin, R. Heinzen, Judith R. Kidd, S. Stein, Andrew J. Pakstis, Nick P. Tosches, C.-C. Yeh, Perry L. Miller, Kenneth K. Kidd
2003 J jnl
PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for
BMC Bioinform.
Deyun Pan, Ning Sun, Kei-Hoi Cheung, Zhong Guan, Ligeng Ma, Matthew Holford, Xingwang Deng, Hongyu Zhao
2002 J jnl
A dynamic approach to mapping coordinates between microplates and microarrays.
J. Biomed. Informatics
Kei-Hoi Cheung, Janet Hager, Kenneth Nelson, Kevin P. White, Yuli Li, Michael Snyder, Kenneth R. Williams, Perry L. Miller
2002 J jnl
The TRIPLES database: a community resource for yeast molecular biology.
Nucleic Acids Res.
Anuj Kumar, Kei-Hoi Cheung, Nick P. Tosches, Peter Masiar, Yang Liu, Perry L. Miller, Michael Snyder
2002 Misc conf
YMD: a microarray database for large-scale gene expression analysis.
AMIA
Kei-Hoi Cheung, Kevin P. White, Janet Hager, Mark Gerstein, Valerie Reinke, Kenneth Nelson, Peter Masiar, Ranjana Srivastava, Yuli Li, Ju Li, Hongyu Zhao, Jinming Li, David B. Allison, Michael Snyder, Perry L. Miller, Kenneth R. Williams
2001 Misc conf
A metadata framework for interoperating heterogeneous genome data using XML.
AMIA
Kei-Hoi Cheung, Aniruddha M. Deshpande, Nick P. Tosches, S. Nath, A. Agrawal, Perry L. Miller, Anuj Kumar, Michael Snyder
2001 J jnl
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms - an update.
Nucleic Acids Res.
Michael V. Osier, Kei-Hoi Cheung, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd
2001 C conf
An XML Application For Genomic Data Interoperation.
BIBE
Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller
2000 C conf
A Graph-based Meta-data Framework for Interoperation between Genome Databases.
BIBE
Kei-Hoi Cheung, Dong-Guk Shin
2000 J jnl
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms.
Nucleic Acids Res.
Kei-Hoi Cheung, Michael V. Osier, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd
2000 Misc conf
Graphically-enabled integration of bioinformatics tools allowing parallel execution.
AMIA
Kei-Hoi Cheung, Perry L. Miller, A. H. Sherman, Stephen B. Weston, Eric Stratmann, Martin H. Schultz, Michael Snyder, Anuj Kumar
2000 J jnl
TRIPLES: a database of gene function in Saccharomyces cerevisiae.
Nucleic Acids Res.
Anuj Kumar, Kei-Hoi Cheung, Petra Ross-MacDonald, Paulo S. R. Coelho, Perry L. Miller, Michael Snyder
1998 — conf
A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability.
IADT
Kei-Hoi Cheung, Dong-Guk Shin
1998 J jnl
A metadata approach to query interoperation between molecular biology databases.
Bioinform.
Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin
1998 Misc conf
A simple model capable of expressing meta-data for database interoperability.
CATA
Kei-Hoi Cheung, Dong-Guk Shin
1998 Misc conf
Automatic query mapping among genomic databases: a pilot exploration.
AMIA
Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin
1996 J jnl
DNA Workbench: A Database Package to Manage Regional Physical Mapping.
J. Comput. Biol.
Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd
1995 J jnl
Application of Technology: Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12.
J. Am. Medical Informatics Assoc.
Perry L. Miller, Prakash M. Nadkarni, Kenneth K. Kidd, Kei-Hoi Cheung, David C. Ward, Amy Banks, Patricia Bray-Ward, Lisa Cupelli, Valerie Herdman, Ivonne Marondel, Kate Montcomery, Beatrice Renault, Sunc-Joo Yoon, Kenneth S. Krauter, Raju Kucherlapati
1992 B conf
Fuzzy classification of heart rate trends and artifacts.
CBMS
Dean F. Sittig, Kei-Hoi Cheung, Lewis Berman
1988 J jnl
Isoreflectance contours for medical imaging.
IEEE Trans. Biomed. Eng.
Kei-Hoi Cheung, Martin D. Fox