Kay Hamacher - RankMe

68 papers A 3B 1C 3Journal 38Unranked 23

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Anisotropic Network Analysis of Open/Closed HCN4 Channel Advocates Asymmetric Subunit Cooperativity in cAMP Modulation of Gating. J. Chem. Inf. Model. Patrick Kunzmann, Jan Hendrik Krumbach, Andrea Saponaro, Anna Moroni, Gerhard Thiel, Kay Hamacher
2023	J	`jnl`	Biotite: new tools for a versatile Python bioinformatics library. BMC Bioinform. Patrick Kunzmann, Tom David Müller, Maximilian Greil, Jan Hendrik Krumbach, Jacob Marcel Anter, Daniel Bauer, Faisal Islam, Kay Hamacher
2022	J	`jnl`	Adding hydrogen atoms to molecular models via fragment superimposition. Algorithms Mol. Biol. Patrick Kunzmann, Jacob Marcel Anter, Kay Hamacher
2022	J	`jnl`	Consistent Quantification of Complex Dynamics via a Novel Statistical Complexity Measure. Entropy Frank Keul, Kay Hamacher
2022	J	`jnl`	EasySMPC: a simple but powerful no-code tool for practical secure multiparty computation. BMC Bioinform. Felix Nikolaus Wirth, Tobias Kussel, Armin Müller, Kay Hamacher, Fabian Prasser
2022	J	`jnl`	Fallzahlen, Re-Identifikation und der technische Datenschutz. Datenschutz und Datensicherheit Kay Hamacher, Tobias Kussel, Tatiana von Landesberger, Tom Baumgartl, Markus Höhn, Simone Scheithauer, Michael Marschollek, Antje Wulff
2022	J	`jnl`	Mainzelliste SecureEpiLinker (MainSEL): privacy-preserving record linkage using secure multi-party computation. Bioinform. Sebastian Stammler, Tobias Kussel, Phillipp Schoppmann, Florian Stampe, Galina Tremper, Stefan Katzenbeisser, Kay Hamacher, Martin Lablans
2022	—	`conf`	PEA: Practical Private Epistasis Analysis Using MPC. ESORICS (3) Kay Hamacher, Tobias Kussel, Thomas Schneider, Oleksandr Tkachenko
2022	J	`jnl`	PEA: Practical private epistasis analysis using MPC. IACR Cryptol. ePrint Arch. Kay Hamacher, Tobias Kussel, Thomas Schneider, Oleksandr Tkachenko
2022	J	`jnl`	SPIKE: Secure and Private Investigation of the Kidney Exchange problem. CoRR Timm Birka, Kay Hamacher, Tobias Kussel, Helen Möllering, Thomas Schneider
2022	J	`jnl`	SPIKE: secure and private investigation of the kidney exchange problem. BMC Medical Informatics Decis. Mak. Timm Birka, Kay Hamacher, Tobias Kussel, Helen Möllering, Thomas Schneider
2022	—	`conf`	Secure Multi-Party Computation Based Distributed Feasibility Queries - A HiGHmed Use Case. GMDS Reto Wettstein, Tobias Kussel, Hauke Hund, Christian Fegeler, Martin Dugas, Kay Hamacher
2021	A	`conf`	Genetic algorithm niching by (Quasi-)infinite memory. GECCO Adrian Worring, Benjamin E. Mayer, Kay Hamacher
2020	J	`jnl`	Genomische Daten und der Datenschutz. Datenschutz und Datensicherheit Kay Hamacher, Stefan Katzenbeisser, Tobias Kussel, Sebastian Stammler
2020	J	`jnl`	SICOR: Subgraph Isomorphism Comparison of RNA Secondary Structures. IEEE ACM Trans. Comput. Biol. Bioinform. Michael Schmidt, Kay Hamacher, Felix Reinhardt, Thea S. Lotz, Florian Groher, Beatrix Suess, Sven Jager
2020	J	`jnl`	Substitution matrix based color schemes for sequence alignment visualization. BMC Bioinform. Patrick Kunzmann, Benjamin E. Mayer, Kay Hamacher
2019	—	`conf`	Hybridization of Stochastic Tunneling with (Quasi)-Infinite Time-Horizon Tabu Search. HM Kay Hamacher
2019	J	`jnl`	Long-term integrity protection of genomic data. EURASIP J. Inf. Secur. Johannes Buchmann, Matthias Geihs, Kay Hamacher, Stefan Katzenbeisser, Sebastian Stammler
2018	J	`jnl`	Biotite: a unifying open source computational biology framework in Python. BMC Bioinform. Patrick Kunzmann, Kay Hamacher
2018	A	`conf`	Large-Scale Privacy-Preserving Statistical Computations for Distributed Genome-Wide Association Studies. AsiaCCS Oleksandr Tkachenko, Christian Weinert, Thomas Schneider, Kay Hamacher
2018	J	`jnl`	StreaMD: Advanced analysis of molecular dynamics using R. J. Comput. Chem. Maximilian J. Dombrowsky, Sven Jager, Benjamin Schiller, Benjamin E. Mayer, Sebastian Stammler, Kay Hamacher
2018	J	`jnl`	hoDCA: higher order direct-coupling analysis. BMC Bioinform. Michael Schmidt, Kay Hamacher
2017	J	`jnl`	Cleavage Product Accumulation Decreases the Activity of Cutinase during PET Hydrolysis. J. Chem. Inf. Model. Christine Groß, Kay Hamacher, Katja Schmitz, Sven Jager
2017	J	`jnl`	PFASUM: a substitution matrix from Pfam structural alignments. BMC Bioinform. Frank Keul, Martin Hess, Michael Goesele, Kay Hamacher
2017	B	`conf`	Privacy-Preserving Whole-Genome Variant Queries. CANS Daniel Demmler, Kay Hamacher, Thomas Schneider, Sebastian Stammler
2017	J	`jnl`	StreAM-T Algorithms Mol. Biol. Sven Jager, Benjamin Schiller, Philipp Babel, Malte Blumenroth, Thorsten Strufe, Kay Hamacher
2017	—	`conf`	TransferEntropyPT: An R Package to Assess Transfer Entropies via Permutation Tests. CMSB Patrick Boba, Kay Hamacher
2016	J	`jnl`	Addressing inaccuracies in BLOSUM computation improves homology search performance. BMC Bioinform. Martin Hess, Frank Keul, Michael Goesele, Kay Hamacher
2016	C	`conf`	Correcting Finite Sampling Issues in Entropy l-diversity. PSD Sebastian Stammler, Stefan Katzenbeisser, Kay Hamacher
2016	—	`conf`	Evolving Smoothing Kernels for Global Optimization. EvoApplications (2) Paul Manns, Kay Hamacher
2016	C	`conf`	StreAM- T_g : Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Graphs. WABI Sven Jager, Benjamin Schiller, Thorsten Strufe, Kay Hamacher
2016	—	`conf`	Using Lisp Macro-Facilities for Transferable Statistical Tests. ELS Kay Hamacher
2016	—	`conf`	Visual Analysis and Comparison of Multiple Sequence Alignments. VCBM/MedViz Martin Hess, Daniel Jente, Josef Wiemeyer, Kay Hamacher, Michael Goesele
2015	J	`jnl`	DOCKTITE - A Highly Versatile Step-by-Step Workflow for Covalent Docking and Virtual Screening in the Molecular Operating Environment. J. Chem. Inf. Model. Christoph Scholz, Sabine Knorr, Kay Hamacher, Boris Schmidt
2015	—	`conf`	StreaM - A Stream-Based Algorithm for Counting Motifs in Dynamic Graphs. AlCoB Benjamin Schiller, Sven Jager, Kay Hamacher, Thorsten Strufe
2014	—	`conf`	Online Performance Measures for Metaheuristic Optimization. Hybrid Metaheuristics Kay Hamacher
2014	—	`conf`	Privacy-Preserving Whole Genome Sequence Processing through Proxy-Aided ORAM. WPES Nikolaos P. Karvelas, Andreas Peter, Stefan Katzenbeisser, Erik Tews, Kay Hamacher
2014	—	`conf`	R as an Integration Tool in High Performance Computing - Lessons Learned. GI-Jahrestagung Patrick Boba, Stefan Gries, Kay Hamacher
2014	—	`conf`	Serious Games for Solving Protein Sequence Alignments - Combining Citizen Science and Gaming. GameDays Martin Hess, Josef Wiemeyer, Kay Hamacher, Michael Goesele
2014	A	`conf`	Stochastic tunneling transformation during selection in genetic algorithm. GECCO Benjamin E. Mayer, Kay Hamacher
2014	J	`jnl`	Using graphics processing units to investigate molecular coevolution. Concurr. Comput. Pract. Exp. Michael Waechter, Kathrin Jaeger, Daniel Thuerck, Stephanie Weissgraeber, Sven Widmer, Michael Goesele, Kay Hamacher
2014	J	`jnl`	Visual Exploration of Parameter Influence on Phylogenetic Trees. IEEE Computer Graphics and Applications Martin Hess, Sebastian Bremm, Stephanie Weissgraeber, Kay Hamacher, Michael Goesele, Josef Wiemeyer, Tatiana von Landesberger
2014	—	`conf`	Visual analysis of patterns in multiple amino acid mutation graphs. IEEE VAST Olav Lenz, Frank Keul, Sebastian Bremm, Kay Hamacher, Tatiana von Landesberger
2013	—	`conf`	A New Hybrid Metaheuristic - Combining Stochastic Tunneling and Energy Landscape Paving. Hybrid Metaheuristics Kay Hamacher
2013	J	`jnl`	Distance dependency and minimum amino acid alphabets for decoy scoring potentials. J. Comput. Chem. Susanne Pape, Franziska Hoffgaard, Mirjam Dür, Kay Hamacher
2013	J	`jnl`	Genomic Privacy (Dagstuhl Seminar 13412). Dagstuhl Reports Kay Hamacher, Jean-Pierre Hubaux, Gene Tsudik
2013	J	`jnl`	Secure computations on non-integer values with applications to privacy-preserving sequence analysis. Inf. Secur. Tech. Rep. Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder
2013	J	`jnl`	Structure and Anonymity of the Bitcoin Transaction Graph. Future Internet Micha Ober, Stefan Katzenbeisser, Kay Hamacher
2011	J	`jnl`	Efficient quantification of the importance of contacts for the dynamical stability of proteins. J. Comput. Chem. Kay Hamacher
2011	—	`conf`	Interactive visual comparison of multiple trees. IEEE VAST Sebastian Bremm, Tatiana von Landesberger, Martin Hess, Tobias Schreck, Philipp Weil, Kay Hamacher
2011	—	`conf`	Is Your Permutation Algorithm Unbiased for n ≠ 2 m ? PPAM (1) Michael Waechter, Kay Hamacher, Franziska Hoffgaard, Sven Widmer, Michael Goesele
2011	C	`conf`	Public security: simulations need to replace conventional wisdom. NSPW Kay Hamacher, Stefan Katzenbeisser
2011	—	`conf`	Towards Secure Bioinformatics Services (Short Paper). Financial Cryptography Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder
2010	J	`jnl`	BioPhysConnectoR: Connecting Sequence Information and Biophysical Models. BMC Bioinform. Franziska Hoffgaard, Philipp Weil, Kay Hamacher
2010	—	`conf`	Co-evolution in HIV Enzymes. BIOINFORMATICS Patrick Boba, Philipp Weil, Franziska Hoffgaard, Kay Hamacher
2010	J	`jnl`	Computation of mutual information from Hidden Markov Models. Comput. Biol. Chem. Daniel Reker, Stefan Katzenbeisser, Kay Hamacher
2010	J	`jnl`	Computing and visually analyzing mutual information in molecular co-evolution. BMC Bioinform. Sebastian Bremm, Tobias Schreck, Patrick Boba, Stephanie Held, Kay Hamacher
2010	J	`jnl`	Efficient perturbation analysis of elastic network models - Application to acetylcholinesterase of T. californica. J. Comput. Phys. Kay Hamacher
2010	—	`conf`	Intra- and Inter-Molecular Coevolution: The Case of HIV1 Protease and Reverse Transcriptase. BIOSTEC (Selected Papers) Patrick Boba, Philipp Weil, Franziska Hoffgaard, Kay Hamacher
2010	—	`conf`	Protein Domain Phylogenies - Information Theory and Evolutionary Dynamics. BIOINFORMATICS Kay Hamacher
2010	J	`jnl`	Secure Computations on Non-Integer Values. IACR Cryptol. ePrint Arch. Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder
2010	—	`conf`	Secure computations on non-integer values. WIFS Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder
2009	J	`jnl`	Estimating sufficient statistics in co-evolutionary analysis by mutual information. Comput. Biol. Chem. Philipp Weil, Franziska Hoffgaard, Kay Hamacher
2009	—	`conf`	Massively-Parallel Simulation of Biochemical Systems. GI Jahrestagung Jens Ackermann, Paul Baecher, Thorsten Franzel, Michael Goesele, Kay Hamacher
2009	—	`conf`	Vorwort zum Workshop "Massively parallel computational biology on GPUs". GI Jahrestagung Kay Hamacher, Michael Goesele
2007	J	`jnl`	Adaptive extremal optimization by detrended fluctuation analysis. J. Comput. Phys. Kay Hamacher
2007	J	`jnl`	Information theoretical measures to analyze trajectories in rational molecular design. J. Comput. Chem. Kay Hamacher
2006	J	`jnl`	Dependency Map of Proteins in the Small Ribosomal Subunit. PLoS Comput. Biol. Kay Hamacher, Joanna Trylska, James Andrew McCammon