Katsuhisa Horimoto

47 papers B 4C 1Misc 1Journal 29Unranked 9
YearRankTypeTitle / Venue / Authors
2022 J jnl
Phosprof: pathway analysis database of drug response based on phosphorylation activity measurements.
Database J. Biol. Databases Curation
Harumi Kagiwada, Chie Motono, Katsuhisa Horimoto, Kazuhiko Fukui
2019 J jnl
ToGo-WF: prediction of RNA tertiary structures and RNA-RNA/protein interactions using the KNIME workflow.
J. Comput. Aided Mol. Des.
Satoshi Yamasaki, Takayuki Amemiya, Yukimitsu Yabuki, Katsuhisa Horimoto, Kazuhiko Fukui
2013 J jnl
Identification of master regulator candidates in conjunction with network screening and inference.
Int. J. Data Min. Bioinform.
Shigeru Saito, Xinrong Zhou, Taejeong Bae, Sunghoon Kim, Katsuhisa Horimoto
2013 J jnl
Identification of upstream regulators for prognostic expression signature genes in colorectal cancer.
BMC Syst. Biol.
Taejeong Bae, Kyoohyoung Rho, Jin Woo Choi, Katsuhisa Horimoto, Wan Kyu Kim, Sunghoon Kim
2012 — conf
A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data.
ISB
Zhi-Ping Liu, Wanwei Zhang, Katsuhisa Horimoto, Luonan Chen
2012 J jnl
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats.
BMC Syst. Biol.
Guanying Piao, Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Jiarui Wu, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto
2012 — ed.
Algebraic and Numeric Biology - 4th International Conference, ANB 2010, Hagenberg, Austria, July 31- August 2, 2010, Revised Selected Papers
ANB
Katsuhisa Horimoto, Masahiko Nakatsui, Nikolaj Popov
2012 Misc conf
Exploration of Cellular Relationships from Characteristically Expressed Genes by Partial Canonical Correlation Analysis.
CISIS
Akiko Toshimori, Kunio Shimizu, Tingting Yu, Zhining Fan, Xinrong Zhou, Shigeru Saito, Katsuhisa Horimoto, Xia Jinrong, Huarong Zhou
2012 — conf
Network clustering along diabetes progression in three tissues of Goto-Kakizaki rats.
ISB
Xinrong Zhou, Katsuhisa Horimoto, Shigeru Saito, Luonan Chen, Huarong Zhou
2011 J jnl
Discovery of Chemical Compound Groups with Common Structures by a Network Analysis Approach (Affinity Prediction Method).
J. Chem. Inf. Model.
Shigeru Saito, Takatsugu Hirokawa, Katsuhisa Horimoto
2011 J jnl
International Symposium on Symbolic Systems Biology (NII Shonan Meeting 2011-7).
NII Shonan Meet. Rep.
Katsuhisa Horimoto, Katsumi Inoue, Oliver Ray
2011 J jnl
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression.
BMC Syst. Biol.
Huarong Zhou, Shigeru Saito, Guanying Piao, Zhi-Ping Liu, Jiguang Wang, Katsuhisa Horimoto, Luonan Chen
2011 J jnl
Possible linkages between the inner and outer cellular states of human induced pluripotent stem cells.
BMC Syst. Biol.
Shigeru Saito, Yasuko Onuma, Yuzuru Ito, Hiroaki Tateno, Masashi Toyoda, Akutsu Hidenori, Koichiro Nishino, Emi Chikazawa, Yoshihiro Fukawatase, Yoshitaka Miyagawa, Hajime Okita, Nobutaka Kiyokawa, Yohichi Shimma, Akihiro Umezawa, Jun Hirabayashi, Katsuhisa Horimoto, Makoto Asashima
2010 — conf
A General Procedure for Accurate Parameter Estimation in Dynamic Systems Using New Estimation Errors.
ANB
Masahiko Nakatsui, Alexandre Sedoglavic, François Lemaire, François Boulier, Asli Ürgüplü, Katsuhisa Horimoto
2010 — conf
A procedure for identifying master regulators in conjunction with network screening and inference.
BIBM
Shigeru Saito, Xinrong Zhou, Taejeong Bae, Sunghoon Kim, Katsuhisa Horimoto
2010 — conf
Improvement of estimation accuracy in parameter optimization by symbolic computation.
CACSD
Masahiko Nakatsui, Katsuhisa Horimoto
2010 J jnl
Parameter optimization by using differential elimination: a general approach for introducing constraints into objective functions.
BMC Syst. Biol.
Masahiko Nakatsui, Katsuhisa Horimoto, Masahiro Okamoto, Yasuhito Tokumoto, Jun Miyake
2009 B conf
Co-Expressed Gene Assessment Based on the Path Consistency Algorithm: Operon Detention in Escherichia coli.
SMC
Katsuhisa Horimoto, Shigeru Saito
2009 B conf
Completing Networks Using Observed Data.
ALT
Tatsuya Akutsu, Takeyuki Tamura, Katsuhisa Horimoto
2009 — conf
Detection of network structure changes by graphical chain modeling: a case study of hepatitis C virus-related hepatocellular carcinoma.
CDC
Shigeru Saito, Masao Honda, Shuichi Kaneko, Katsuhisa Horimoto
2009 J jnl
Foreword.
Math. Comput. Sci.
Hirokazu Anai, Katsuhisa Horimoto
2008 — ed.
Algebraic Biology, Third International Conference, AB 2008, Castle of Hagenberg, Austria, July 31-August 2, 2008, Proceedings
AB
Katsuhisa Horimoto, Georg Regensburger, Markus Rosenkranz, Hiroshi Yoshida
2008 J jnl
High-throughput Automated Image Processing System for Cell Array Observations.
Inf. Media Technol.
Daisuke Tominaga, Fukumi Iguchi, Katsuhisa Horimoto, Yutaka Akiyama
2008 J jnl
Inference of Probabilities over a Stochastic IL-System by Quantifier Elimination.
Math. Comput. Sci.
Hiroshi Yoshida, Katsuhisa Horimoto, Hirokazu Anai
2008 J jnl
Integer programming-based approach to allocation of reporter genes for cell array analysis.
Int. J. Bioinform. Res. Appl.
Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, Katsuhisa Horimoto, Tatsuya Akutsu
2008 J jnl
Judgment Algorithm for Periodicity of Time Series Data Based on Bayesian Information Criterion.
J. Bioinform. Comput. Biol.
Daisuke Tominaga, Katsuhisa Horimoto
2008 J jnl
Network evaluation from the consistency of the graph structure with the measured data.
BMC Syst. Biol.
Shigeru Saito, Sachiyo Aburatani, Katsuhisa Horimoto
2007 — ed.
Algebraic Biology, Second International Conference, AB 2007, Castle of Hagenberg, Austria, July 2-4, 2007, Proceedings
AB
Hirokazu Anai, Katsuhisa Horimoto, Temur Kutsia
2007 B conf
An Algebraic-Numeric Algorithm for the Model Selection in Kinetic Networks.
CASC
Hiroshi Yoshida, Koji Nakagawa, Hirokazu Anai, Katsuhisa Horimoto
2007 J jnl
Derivation of rigorous conditions for high cell-type diversity by algebraic approach.
Biosyst.
Hiroshi Yoshida, Hirokazu Anai, Katsuhisa Horimoto
2007 — conf
Exact Parameter Determination for Parkinson's Disease Diagnosis with PET Using an Algebraic Approach.
AB
Hiroshi Yoshida, Koji Nakagawa, Hirokazu Anai, Katsuhisa Horimoto
2007 J jnl
Gene Systems Network Inferred from Expression Profiles in Hepatocellular Carcinogenesis by Graphical Gaussian Model.
EURASIP J. Bioinform. Syst. Biol.
Sachiyo Aburatani, Fuyan Sun, Shigeru Saito, Masao Honda, Shuichi Kaneko, Katsuhisa Horimoto
2007 — conf
Inference of Protein-Protein Interactions by Using Co-evolutionary Information.
AB
Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
2006 J jnl
Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints.
IEICE Trans. Fundam. Electron. Commun. Comput. Sci.
Tatsuya Akutsu, Morihiro Hayashida, Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto
2006 J jnl
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.
Bioinform.
Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
2006 J jnl
Protein Threading with Profiles and Distance Constraints Using Clique Based Algorithms.
J. Bioinform. Comput. Biol.
K. C. Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu
2006 J jnl
Symbolic-numeric Estimation of Parameters in Biochemical Models by Quantifier Elimination.
J. Bioinform. Comput. Biol.
Hirokazu Anai, Shigeo Orii, Katsuhisa Horimoto
2005 J jnl
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles.
Nucleic Acids Res.
Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto
2005 B conf
Clique-based algorithms for protein threading with profiles and constraints.
APBC
Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu
2004 J jnl
ASIAN: a website for network inference.
Bioinform.
Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi, Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Sato, Hiroyuki Toh, Katsuhisa Horimoto
2004 C conf
Protein Threading with Profiles and Constraints.
BIBE
Tatsuya Akutsu, Morihiro Hayashida, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto
2003 J jnl
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling.
Signal Process.
Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto
2002 J jnl
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling.
Bioinform.
Hiroyuki Toh, Katsuhisa Horimoto
2001 J jnl
Comprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes.
Bioinform.
Katsuhisa Horimoto, Satoshi Fukuchi, Kentaro Mori
2001 J jnl
Statistical estimation of cluster boundaries in gene expression profile data.
Bioinform.
Katsuhisa Horimoto, Hiroyuki Toh
1998 J jnl
A method for comparing circular genomes from gene locations: application to mitochondrial genomes.
Bioinform.
Katsuhisa Horimoto, Mikita Suyama, Hiroyuki Toh, Kentaro Mori, Jinya Otsuka
1994 — conf
Protein Superfamily Database (Prosup).
CODATA
Katsuhisa Horimoto, Kunio Oshima, Akira Tsugita, Jinya Otsuka