Katharina Nöh

44 papers C 1Misc 2Journal 30Unranked 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
13CFLUX - third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis.
Bioinform.
Anton Stratmann, Martin Beyß, Johann F. Jadebeck, Wolfgang Wiechert, Katharina Nöh
2025 J jnl
EAP4EMSIG - Enhancing Event-Driven Microscopy for Microfluidic Single-Cell Analysis.
CoRR
Nils Friederich, Angelo Jovin Yamachui Sitcheu, Annika Nassal, Erenus Yildiz, Matthias Pesch, Maximilian Beichter, Lukas Scholtes, Bahar Akbaba, Thomas Lautenschlager, Oliver Neumann, Dietrich Kohlheyer, Hanno Scharr, Johannes Seiffarth, Katharina Nöh, Ralf Mikut
2025 J jnl
How To Make Your Cell Tracker Say "I dunno!".
CoRR
Richard D. Paul, Johannes Seiffarth, David Rügamer, Hanno Scharr, Katharina Nöh
2025 J jnl
PyUAT: Open-source Python framework for efficient and scalable cell tracking.
CoRR
Johannes Seiffarth, Katharina Nöh
2025 J jnl
acia-workflows: Automated Single-cell Imaging Analysis for Scalable and Deep Learning-based Live-cell Imaging Analysis Workflows.
CoRR
Johannes Seiffarth, Keitaro Kasahara, Michelle Bund, Benita Lückel, Richard D. Paul, Matthias Pesch, Lennart Witting, Michael Bott, Dietrich Kohlheyer, Katharina Nöh
2024 — conf
Automated Processing of Pipelines Managing Now- and Forecasting of Infectious Diseases.
MIPRO
M. Shahbaz Memon, Johann F. Jadebeck, Michael Osthege, Anna Wendler, David Kerkmann, Henrik Zunker, Wolfgang Wiechert, Katharina Nöh, Jens Henrik Göbbert, Björn Hagemeier, Morris Riedel, Martin J. Kühn
2024 — conf
Customizable and Interactive Visualizations for Investigating Spatio-Temporal Single-Cell Information.
ISBI
Johannes Seiffarth, Luisa Blöbaum, Alexander Grünberger, Katharina Nöh
2024 J jnl
EAP4EMSIG - Experiment Automation Pipeline for Event-Driven Microscopy to Smart Microfluidic Single-Cells Analysis.
CoRR
Nils Friederich, Angelo Jovin Yamachui Sitcheu, Annika Nassal, Matthias Pesch, Erenus Yildiz, Maximilian Beichter, Lukas Scholtes, Bahar Akbaba, Thomas Lautenschlager, Oliver Neumann, Dietrich Kohlheyer, Hanno Scharr, Johannes Seiffarth, Katharina Nöh, Ralf Mikut
2024 J jnl
ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud.
SoftwareX
Johannes Seiffarth, Tim Scherr, Bastian Wollenhaupt, Oliver Neumann, Hanno Scharr, Dietrich Kohlheyer, Ralf Mikut, Katharina Nöh
2024 J jnl
Parameter-efficient Bayesian Neural Networks for Uncertainty-aware Depth Estimation.
CoRR
Richard D. Paul, Alessio Quercia, Vincent Fortuin, Katharina Nöh, Hanno Scharr
2024 — conf
Robust Approximate Characterization of Single-Cell Heterogeneity in Microbial Growth.
ISBI
Richard D. Paul, Johannes Seiffarth, Hanno Scharr, Katharina Nöh
2024 — conf
Tracking One-in-a-Million: Large-Scale Benchmark for Microbial Single-Cell Tracking with Experiment-Aware Robustness Metrics.
ECCV Workshops (16)
Johannes Seiffarth, Luisa Blöbaum, Richard D. Paul, Nils Friederich, Angelo Jovin Yamachui Sitcheu, Ralf Mikut, Hanno Scharr, Alexander Grünberger, Katharina Nöh
2024 J jnl
Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustness metrics.
CoRR
Johannes Seiffarth, Luisa Blöbaum, Richard D. Paul, Nils Friederich, Angelo Jovin Yamachui Sitcheu, Ralf Mikut, Hanno Scharr, Alexander Grünberger, Katharina Nöh
2024 J jnl
hopsy - a methods marketplace for convex polytope sampling in Python.
Bioinform.
Richard D. Paul, Johann F. Jadebeck, Anton Stratmann, Wolfgang Wiechert, Katharina Nöh
2023 J jnl
Practical sampling of constraint-based models: Optimized thinning boosts CHRR performance.
PLoS Comput. Biol.
Johann F. Jadebeck, Wolfgang Wiechert, Katharina Nöh
2022 — conf
A Hybrid Multi-Object Segmentation Framework with Model-Based B-Splines for Microbial Single Cell Analysis.
ISBI
Karina Ruzaeva, Katharina Nöh, Benjamin Berkels
2022 J jnl
A hybrid multi-object segmentation framework with model-based B-splines for microbial single cell analysis.
CoRR
Karina Ruzaeva, Katharina Nöh, Benjamin Berkels
2022 — conf
Automated Characterization of Catalytically Active Inclusion Body Production in Biotechnological Screening Systems.
EMBC
Karina Ruzaeva, Kira Küsters, Wolfgang Wiechert, Benjamin Berkels, Marco Oldiges, Katharina Nöh
2022 J jnl
Automated Characterization of Catalytically Active Inclusion Body Production in Biotechnological Screening Systems.
CoRR
Karina Ruzaeva, Kira Küsters, Wolfgang Wiechert, Benjamin Berkels, Marco Oldiges, Katharina Nöh
2022 C conf
Cell tracking for live-cell microscopy using an activity-prioritized assignment strategy.
IPAS
Karina Ruzaeva, Jan-Christopher Cohrs, Keitaro Kasahara, Dietrich Kohlheyer, Katharina Nöh, Benjamin Berkels
2022 J jnl
Cell tracking for live-cell microscopy using an activity-prioritized assignment strategy.
CoRR
Karina Ruzaeva, Jan-Christopher Cohrs, Keitaro Kasahara, Dietrich Kohlheyer, Katharina Nöh, Benjamin Berkels
2022 J jnl
PolyRound: polytope rounding for random sampling in metabolic networks.
Bioinform.
Axel Theorell, Johann F. Jadebeck, Katharina Nöh, Jörg Stelling
2021 J jnl
HOPS: high-performance library for (non-)uniform sampling of convex-constrained models.
Bioinform.
Johann F. Jadebeck, Axel Theorell, Samuel Leweke, Katharina Nöh
2021 — conf
Polar Space Based Shape Averaging for Star-shaped Biological Objects.
VCBM
Karina Ruzaeva, Katharina Nöh, Benjamin Berkels
2020 J jnl
Reversible jump MCMC for multi-model inference in Metabolic Flux Analysis.
Bioinform.
Axel Theorell, Katharina Nöh
2019 J jnl
When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis.
Bioinform.
Axel Theorell, Johannes Seiffarth, Alexander Grünberger, Katharina Nöh
2019 J jnl
mycelyso - high-throughput analysis of Streptomyces mycelium live cell imaging data.
BMC Bioinform.
Christian Carsten Sachs, Joachim Koepff, Wolfgang Wiechert, Alexander Grünberger, Katharina Nöh
2018 J jnl
A Pareto approach to resolve the conflict between information gain and experimental costs: Multiple-criteria design of carbon labeling experiments.
PLoS Comput. Biol.
Katharina Nöh, Sebastian Niedenführ, Martin Beyß, Wolfgang Wiechert
2015 J jnl
Fluxome study of Pseudomonas fluorescens reveals major reorganisation of carbon flux through central metabolic pathways in response to inactivation of the anti-sigma factor MucA.
BMC Syst. Biol.
Stina K. Lien, Sebastian Niedenführ, Håvard Sletta, Katharina Nöh, Per Bruheim
2015 J jnl
Visual workflows for
Bioinform.
Katharina Nöh, Peter Droste, Wolfgang Wiechert
2015 J jnl
Vizardous: interactive analysis of microbial populations with single cell resolution.
Bioinform.
Stefan Helfrich, Charaf E. Azzouzi, Christopher Probst, Johannes Seiffarth, Alexander Grünberger, Wolfgang Wiechert, Dietrich Kohlheyer, Katharina Nöh
2013 J jnl
13CFLUX2 - high-performance software suite for
Bioinform.
Michael Weitzel, Katharina Nöh, Tolga Dalman, Sebastian Niedenführ, Birgit Stute, Wolfgang Wiechert
2013 J jnl
Cloud MapReduce for Monte Carlo bootstrap applied to Metabolic Flux Analysis.
Future Gener. Comput. Syst.
Tolga Dalman, Tim Dörnemann, Ernst Juhnke, Michael Weitzel, Wolfgang Wiechert, Katharina Nöh, Bernd Freisleben
2012 J jnl
A Software Framework for Modeling and Simulation of Dynamic Metabolic and Isotopic Systems.
Simul. Notes Eur.
Jana Tillack, Stephan Noack, Katharina Nöh, Atya Elsheikh, Wolfgang Wiechert
2012 J jnl
Semi-automatic drawing of metabolic networks.
Inf. Vis.
Peter Droste, Wolfgang Wiechert, Katharina Nöh
2011 — conf
An Online Provenance Service for Distributed Metabolic Flux Analysis Workflows.
ECOWS
Tolga Dalman, Michael Weitzel, Wolfgang Wiechert, Bernd Freisleben, Katharina Nöh
2011 J jnl
Determination of flux directions by thermodynamic network analysis: Computing informative metabolite pools.
Math. Comput. Simul.
Frieder Hadlich, Katharina Nöh, Wolfgang Wiechert
2011 J jnl
Visualizing multi-omics data in metabolic networks with the software Omix - A case study.
Biosyst.
Peter Droste, Stephan Miebach, Sebastian Niedenführ, Wolfgang Wiechert, Katharina Nöh
2010 — conf
Customizable Visualization on Demand for Hierarchically Organized Information in Biochemical Networks.
CompIMAGE
Peter Droste, Eric von Lieres, Wolfgang Wiechert, Katharina Nöh
2010 — conf
Metabolic Flux Analysis in the Cloud.
eScience
Tolga Dalman, Tim Dörnemann, Ernst Juhnke, Michael Weitzel, Matthew Smith, Wolfgang Wiechert, Katharina Nöh, Bernd Freisleben
2010 — conf
Workflows for Metabolic Flux Analysis: Data Integration and Human Interaction.
ISoLA (1)
Tolga Dalman, Peter Droste, Michael Weitzel, Wolfgang Wiechert, Katharina Nöh
2007 J jnl
The topology of metabolic isotope labeling networks.
BMC Bioinform.
Michael Weitzel, Wolfgang Wiechert, Katharina Nöh
2004 Misc conf
High Precision Simulation of Near Earth Satellite Orbits for SAR-Applications.
International Conference on Computational Science
Marc Kalkuhl, Katharina Nöh, Otmar Loffeld, Wolfgang Wiechert
2004 Misc conf
Parallel Solution of Cascaded ODE Systems Applied to 13C-Labeling Experiments.
International Conference on Computational Science
Katharina Nöh, Wolfgang Wiechert