Katarzyna Stapor

42 papers C 1Misc 4Journal 21Unranked 11

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	DisorderUnetLM: Validating ProteinUnet for efficient protein intrinsic disorder prediction. Comput. Biol. Medicine Krzysztof Kotowski, Irena Roterman, Katarzyna Stapor
2024	J	`jnl`	Protein intrinsic disorder prediction using Attention U-Net and ProtTrans protein language model. CoRR Krzysztof Kotowski, Irena Roterman, Katarzyna Stapor
2024	J	`jnl`	The outer-membrane componentof the multi-drug efflux system -a structural analysis based onhydrophobicity distribution. Bio Algorithms Med Syst. Irena Roterman, Leszek Konieczny, Katarzyna Stapor
2023	J	`jnl`	Ab initio protein structure prediction: the necessary presence of external force field as it is delivered by Hsp40 chaperone. BMC Bioinform. Irena Roterman, Katarzyna Stapor, Leszek Konieczny
2023	J	`jnl`	Role of environmental specificity in CASP results. BMC Bioinform. Irena Roterman, Katarzyna Stapor, Leszek Konieczny
2023	J	`jnl`	The importance of ocular artifact removal in single-trial ERP analysis: The case of the N250 in face learning. Biomed. Signal Process. Control. Krzysztof Kotowski, Jeremi K. Ochab, Katarzyna Stapor, Werner Sommer
2022	J	`jnl`	Lightweight ProteinUnet2 network for protein secondary structure prediction: a step towards proper evaluation. BMC Bioinform. Katarzyna Stapor, Krzysztof Kotowski, Tomasz Smolarczyk, Irena Roterman
2021	J	`jnl`	Divergence Entropy-Based Evaluation of Hydrophobic Core in Aggressive and Resistant Forms of Transthyretin. Entropy Mateusz Banach, Katarzyna Stapor, Piotr Fabian, Leszek Konieczny, Irena Roterman
2021	J	`jnl`	How to design the fair experimental classifier evaluation. Appl. Soft Comput. Katarzyna Stapor, Pawel Ksieniewicz, Salvador García, Michal Wozniak
2021	J	`jnl`	ProteinUnet - An efficient alternative to SPIDER3-single for sequence-based prediction of protein secondary structures. J. Comput. Chem. Krzysztof Kotowski, Tomasz Smolarczyk, Irena Roterman-Konieczna, Katarzyna Stapor
2020	J	`jnl`	Alternative Hydrophobic Core in Proteins - The Effect of Specific Synergy. Symmetry Piotr Fabian, Katarzyna Stapor, Mateusz Banach, Magdalena Ptak-Kaczor, Leszek Konieczny, Irena Roterman
2020	—	`book`	Introduction to Probabilistic and Statistical Methods with Examples in R Katarzyna Stapor
2020	J	`jnl`	The Status of Edge Strands in Ferredoxin-Like Fold. Symmetry Mateusz Banach, Piotr Fabian, Katarzyna Stapor, Leszek Konieczny, Magdalena Ptak-Kaczor, Irena Roterman
2019	J	`jnl`	Backbone dihedral angles prediction servers for protein early-stage structure prediction. Bio Algorithms Med Syst. Tomasz Smolarczyk, Katarzyna Stapor, Irena Roterman-Konieczna
2019	—	`ch.`	Machine Learning Methods for the Protein Fold Recognition Problem. Machine Learning Paradigms Katarzyna Stapor, Irena Roterman-Konieczna, Piotr Fabian
2018	—	`conf`	Deep Learning Features for Face Age Estimation: Better Than Human? BDAS Krzysztof Kotowski, Katarzyna Stapor
2017	C	`conf`	Developing an SVM classifier for extended ES protein structure prediction. FedCSIS Piotr Fabian, Katarzyna Stapor
2017	—	`conf`	Evaluating and Comparing Classifiers: Review, Some Recommendations and Limitations. CORES Katarzyna Stapor
2017	—	`conf`	Evaluation of classifiers: current methods and future research directions. FedCSIS (Position Papers) Katarzyna Stapor
2016	—	`conf`	Classification of Protein Interactions Based on Sparse Discriminant Analysis and Energetic Features. CISIM Katarzyna Stapor, Piotr Fabian
2016	J	`jnl`	Using the one-versus-rest strategy with samples balancing to improve pairwise coupling classification. Int. J. Appl. Math. Comput. Sci. Wieslaw Chmielnicki, Katarzyna Stapor
2015	J	`jnl`	A method of predicting the secondary protein structure based on dictionaries. Bio Algorithms Med Syst. Irena Roterman-Konieczna, Piotr Fabian, Katarzyna Stapor
2015	—	`conf`	Combining One-Versus-One and One-Versus-All Strategies to Improve Multiclass SVM Classifier. CORES Wieslaw Chmielnicki, Katarzyna Stapor
2015	J	`jnl`	Statistical dictionaries for hypothetical in silico model of the early-stage intermediate in protein folding. J. Comput. Aided Mol. Des. Barbara Kalinowska, Piotr Fabian, Katarzyna Stapor, Irena Roterman
2012	J	`jnl`	A hybrid discriminative/generative approach to protein fold recognition. Neurocomputing Wieslaw Chmielnicki, Katarzyna Stapor
2012	J	`jnl`	An improved protein fold recognition with support vector machines. Expert Syst. J. Knowl. Eng. Wieslaw Chmielnicki, Irena Roterman-Konieczna, Katarzyna Stapor
2012	J	`jnl`	Protein fold classification based on machine learning paradigm - a review. Bio Algorithms Med Syst. Katarzyna Stapor
2011	—	`ch.`	A New Approach to Multi-class SVM-Based Classification Using Error Correcting Output Codes. Computer Recognition Systems 4 Wieslaw Chmielnicki, Katarzyna Stapor
2011	J	`jnl`	A combined SVM-RDA classifier for protein fold recognition. Bio Algorithms Med Syst. Wieslaw Chmielnicki, Katarzyna Stapor
2011	—	`conf`	An Effective Feature Selection Algorithm Based on the Class Similarity Used with a SVM-RDA Classifier to Protein Fold Recognition. HAIS (2) Wieslaw Chmielnicki, Katarzyna Stapor
2010	J	`jnl`	A combined SVM-RDA classifier for protein fold recognition. Bio Algorithms Med Syst. Wieslaw Chmielnicki, Katarzyna Stapor
2010	—	`conf`	An Efficient Multi-class Support Vector Machine Classifier for Protein Fold Recognition. IWPACBB Wieslaw Chmielnicki, Katarzyna Stapor, Irena Roterman-Konieczna
2010	—	`conf`	Protein Fold Recognition with Combined SVM-RDA Classifier. HAIS (1) Wieslaw Chmielnicki, Katarzyna Stapor
2009	—	`ch.`	A New Feature Extraction Method Based on the Partial Least Squares Algorithm and Its Applications. Computer Recognition Systems 3 Pawel Blaszczyk, Katarzyna Stapor
2008	Misc	`conf`	Classes of Kernels for Hit Definition in Compound Screening. ICAISC Karol Kozak, Katarzyna Stapor
2008	—	`ch.`	Optimization of the SVM Screening Kernel-Application to Hit Definition in Compound Screening. Computer Recognition Systems 2 Karol Kozak, Marta Kozak, Katarzyna Stapor
2007	—	`conf`	Kernels for Chemical Compounds in Biological Screening. ICANNGA (2) Karol Kozak, Marta Kozak, Katarzyna Stapor
2005	—	`conf`	Mean Shift Segmentation, Genetic Algorithms and Support Vector Machines for Identification of Glaucoma in Fundus Eye Images. CORES Katarzyna Stapor, Adrian Brueckner
2004	Misc	`conf`	Automatic Detection of Glaucomatous Changes Using Adaptive Thresholding and Neural Networks. International Conference on Computational Science Katarzyna Stapor, Leslaw Pawlaczyk, Radim Chrástek, Georg Michelson
2004	—	`conf`	Automatic Segmentation and Classification of Fundus Eye Images for Glaucoma Diagnosis. Bildverarbeitung für die Medizin Katarzyna Stapor, Leslaw Pawlaczyk, Radim Chrástek, Heinrich Niemann, Georg Michelson
2004	Misc	`conf`	Mathematical Morphology and Support Vector Machines for Diagnosis of Glaucoma on Fundus eye Images. ICCVG Katarzyna Stapor, Adrian Brueckner, Adam Switonski
2004	Misc	`conf`	Segmentation of Fundus Eye Images Using Methods of Mathematical Morphology for Glaucoma Diagnosis. International Conference on Computational Science Katarzyna Stapor, Adam Switonski, Radim Chrástek, Georg Michelson