Katarzyna Bozek

22 papers A* 1Journal 17Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
CoRR
Arash Fatehi, David Unnersjö-Jess, Linus Butt, Noémie Moreau, Thomas Benzing, Katarzyna Bozek
2026 J jnl
CoRR
Lucas Sancere, Noémie Moreau, Katarzyna Bozek
2026 J jnl
PLoS Comput. Biol.
Lucas Sancere, Carina Lorenz, Doris Helbig, Oana-Diana Persa, Sonja Dengler, Alexander Kreuter, Martim Laimer, Roland Lang, Anne Fröhlich, Jennifer Landsberg, Johannes Brägelmann, Katarzyna Bozek
2026 J jnl
CoRR
Kim Ouan, Noémie Moreau, Katarzyna Bozek
2026 J jnl
CoRR
Florian Bürger, Martim Dias Gomes, Adrián E. Granada, Noémie Moreau, Katarzyna Bozek
2025 J jnl
CoRR
David Bertram, Anja Ophey, Sinah Röttgen, Konstantin Kufer, Gereon R. Fink, Elke Kalbe, Clint Hansen, Walter Maetzler, Maximilian Kapsecker, Lara Marie Reimer, Stephan M. Jonas, Andreas T. Damgaard, Natasha B. Bertelsen, Casper Skjærbæk, Per Borghammer, Karolien Groenewald, Pietro-Luca Ratti, Michele T. Hu, Noémie Moreau, Michael Sommerauer, Katarzyna Bozek
2025 conf
IST
Mahsa Vali, Hossein Arabi, Katarzyna Bozek
2025 J jnl
CoRR
Lucas Sancere, Carina Lorenz, Doris Helbig, Oana-Diana Persa, Sonja Dengler, Alexander Kreuter, Martim Laimer, Anne Fröhlich, Jennifer Landsberg, Johannes Brägelmann, Katarzyna Bozek
2025 J jnl
CoRR
Ruining Deng, Tianyuan Yao, Yucheng Tang, Junlin Guo, Siqi Lu, Juming Xiong, Lining Yu, Quan Huu Cap, Pengzhou Cai, Libin Lan, Ze Zhao, Adrian Galdran, Amit Kumar, Gunjan Deotale, Dev Kumar Das, Inyoung Paik, Joonho Lee, Geongyu Lee, Yujia Chen, Wangkai Li, Zhaoyang Li, Xuege Hou, Zeyuan Wu, Shengjin Wang, Maximilian Fischer, Lars Kramer, Anghong Du, Le Zhang, Maria Sanchez Sanchez, Helena Sanchez Ulloa, David Ribalta Heredia, Carlos Perez de Arenaza Garcia, Shuoyu Xu, Bingdou He, Xinping Cheng, Tao Wang, Noémie Moreau, Katarzyna Bozek, Shubham Innani, Ujjwal Baid, Kaura Solomon Kefas, Bennett A. Landman, Yu Wang, Shilin Zhao, Mengmeng Yin, Haichun Yang, Yuankai Huo
2025 J jnl
CoRR
Florian Bürger, Martim Dias Gomes, Nica Gutu, Adrián E. Granada, Noémie Moreau, Katarzyna Bozek
2024 J jnl
Mach. Learn. Knowl. Extr.
Leandra Lukomski, Juan I. Pisula, Naita Wirsik, Alexander Damanakis, Jin-On Jung, Karl Knipper, Rabi R. Datta, Wolfgang Schröder, Florian Gebauer, Thomas Schmidt, Alexander Quaas, Katarzyna Bozek, Christiane J. Bruns, Felix Popp
2024 conf
ECCV Workshops (16)
Juan I. Pisula, Katarzyna Bozek
2024 J jnl
CoRR
Juan I. Pisula, Katarzyna Bozek
2024 conf
ISBI
Noémie Moreau, Michelle Shabani, Christoph Schell, Katarzyna Bozek
2024 J jnl
Comput. Biol. Medicine
Hussein Naji, Lucas Sancere, Adrian Simon, Reinhard Büttner, Marie-Lisa Eich, Philipp Lohneis, Katarzyna Bozek
2023 J jnl
CoRR
Piotr Wójcik, Hussein Naji, Adrian Simon, Reinhard Büttner, Katarzyna Bozek
2022 J jnl
CoRR
Juan I. Pisula, Katarzyna Bozek
2018 J jnl
CoRR
Katarzyna Bozek, Laetitia Hebert, Alexander S. Mikheyev, Greg J. Stephens
2018 A* conf
CVPR
Katarzyna Bozek, Laetitia Hebert, Alexander S. Mikheyev, Greg J. Stephens
2017 J jnl
CoRR
Katarzyna Bozek, Laetitia Hebert, Alexander S. Mikheyev, Greg J. Stephens
2013 J jnl
PLoS Comput. Biol.
Katarzyna Bozek, Thomas Lengauer, Saleta Sierra, Rolf Kaiser, Francisco S. Domingues
2012
Katarzyna Bozek
docs/apk-code-schema.md
← Index docs/apk-code-schema.md markdown
# APK Code Analysis — ClickHouse Schema

All tables follow the `ReplacingMergeTree(analysis_date)` pattern from
`docs/new-code-binja-schema.md`, except `code_apk_analysis_errors` which
uses `MergeTree()`.

**Companion PDD:** `APK_CODE_ANALYSIS_PDD-Tech_Annex.md` §7

---

## Table overview

| # | Table | Analog (Binja) | Engine | Key |
|---|-------|----------------|--------|-----|
| 1 | `code_apk_decompiled_methods_content` | `code_binja_decompiled_functions_content` | ReplacingMergeTree | `decompiled_method_hash` |
| 2 | `code_apk_decompiled_methods_references` | `code_binja_decompiled_functions_references` | ReplacingMergeTree | `(sha256, decompiled_method_hash)` |
| 3 | `code_apk_smali_methods_content` | `code_binja_disassembled_functions_content` | ReplacingMergeTree | `smali_method_hash` |
| 4 | `code_apk_smali_methods_references` | `code_binja_disassembled_functions_references` | ReplacingMergeTree | `(sha256, smali_method_hash)` |
| 5 | `code_apk_method_similarity_metrics` | `code_binja_function_similarity_metrics` | ReplacingMergeTree | `smali_method_hash` |
| 6 | `code_apk_cfg_methods` | `code_binja_cfg_functions` | ReplacingMergeTree | `smali_method_hash` |
| 7 | `code_binja_strings_raw` *(shared)* | — | Null (→ MV) | — |
| 8 | `code_apk_analysis_errors` | `function_analysis_errors_binja` | MergeTree | `(sha256, error_location, error_hash)` |

---

## Table 1: `code_apk_decompiled_methods_content`

**Analog:** `code_binja_decompiled_functions_content`

```sql
CREATE TABLE IF NOT EXISTS code_apk_decompiled_methods_content (
    decompiled_method_hash FixedString(64),          -- SHA-256 of normalized Java source
    decompiled_method String CODEC(ZSTD(3)),          -- Full Java method source
    decompiled_method_type Enum8('USER'=1, 'LIBRARY'=2, 'UNKNOWN'=5) DEFAULT 'UNKNOWN',
    decompiled_has_string_encryption UInt8 DEFAULT 0,
    decompiled_has_reflection_calls UInt8 DEFAULT 0,
    decompiled_excessive_goto_count UInt8 DEFAULT 0,
    analysis_date DateTime64(3, 'UTC'),

    INDEX idx_method_content_token lower(decompiled_method) TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY decompiled_method_hash;
```

## Table 2: `code_apk_decompiled_methods_references`

**Analog:** `code_binja_decompiled_functions_references`

```sql
CREATE TABLE IF NOT EXISTS code_apk_decompiled_methods_references (
    sha256 FixedString(64),
    decompiled_method_hash FixedString(64),
    smali_method_hash Nullable(FixedString(64)),
    decompiled_class_name LowCardinality(String),
    decompiled_method_name LowCardinality(String),
    decompiled_method_signature String,               -- Dalvik descriptor: (Landroid/os/Bundle;)V
    decompiled_method_prototype String,               -- Java-style: void onCreate(Bundle)
    functions_caller Array(String),
    functions_call Array(String),
    analysis_date DateTime64(3, 'UTC'),

    INDEX idx_decompiled_class_name decompiled_class_name TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1,
    INDEX idx_decompiled_method_name decompiled_method_name TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1,
    INDEX idx_functions_caller functions_caller TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1,
    INDEX idx_functions_call functions_call TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY (sha256, decompiled_method_hash);
```

## Table 3: `code_apk_smali_methods_content`

**Analog:** `code_binja_disassembled_functions_content`

```sql
CREATE TABLE IF NOT EXISTS code_apk_smali_methods_content (
    smali_method_hash FixedString(64),                -- SHA-256 of normalized smali body
    smali_method String CODEC(ZSTD(3)),               -- Full smali method body
    smali_method_type Enum8('USER'=1, 'LIBRARY'=2, 'UNKNOWN'=5) DEFAULT 'UNKNOWN',
    smali_instructions_count UInt32,
    smali_register_count UInt16,
    smali_has_string_encryption UInt8 DEFAULT 0,
    smali_has_reflection_calls UInt8 DEFAULT 0,
    smali_excessive_goto_count UInt8 DEFAULT 0,
    smali_flattened_score Float64 DEFAULT 0.0,       -- Control flow flattening score (0.01.0)
    smali_mba_score Float64 DEFAULT 0.0,             -- Mixed boolean-arithmetic score (0.01.0)
    analysis_date DateTime64(3, 'UTC'),

    INDEX idx_smali_ngram smali_method TYPE ngrambf_v1(3, 32768, 3, 0) GRANULARITY 1,
    INDEX idx_smali_method_type smali_method_type TYPE set(3) GRANULARITY 1,
    INDEX idx_smali_instr_count smali_instructions_count TYPE minmax GRANULARITY 4,
    INDEX idx_smali_reg_count smali_register_count TYPE minmax GRANULARITY 4,
    INDEX idx_smali_flattened smali_flattened_score TYPE minmax GRANULARITY 4,
    INDEX idx_smali_mba smali_mba_score TYPE minmax GRANULARITY 4
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY smali_method_hash;
```

## Table 4: `code_apk_smali_methods_references`

**Analog:** `code_binja_disassembled_functions_references`

```sql
CREATE TABLE IF NOT EXISTS code_apk_smali_methods_references (
    sha256 FixedString(64),
    smali_method_hash FixedString(64),
    decompiled_method_hash Nullable(FixedString(64)),
    smali_class_name LowCardinality(String),
    smali_method_name LowCardinality(String),
    smali_method_signature String,
    analysis_date DateTime64(3, 'UTC'),

    INDEX idx_smali_class_name smali_class_name TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1,
    INDEX idx_smali_method_name smali_method_name TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY (sha256, smali_method_hash);
```

## Table 5: `code_apk_method_similarity_metrics`

**Analog:** `code_binja_function_similarity_metrics`

Content-based fuzzy matching table. Structural/CFG scalars (block_count, edge_count, etc.)
are in `code_apk_cfg_methods` (Table 6) — this table holds only fuzzy hashes and MinHash.

```sql
CREATE TABLE IF NOT EXISTS code_apk_method_similarity_metrics (
    smali_method_hash FixedString(64),
    -- Raw smali fuzzy hashes (analog: ssdeep_disassembly / tlsh_disassembly)
    ssdeep_smali Nullable(String),
    tlsh_smali Nullable(FixedString(72)),
    -- Semantically normalized smali fuzzy hashes (analog: ssdeep_llil / tlsh_llil)
    ssdeep_smali_normalized Nullable(String),
    tlsh_smali_normalized Nullable(FixedString(72)),
    minhash Array(UInt8),
    analysis_date DateTime64(3, 'UTC'),

    INDEX idx_ssdeep ssdeep_smali TYPE bloom_filter GRANULARITY 1,
    INDEX idx_tlsh tlsh_smali TYPE bloom_filter GRANULARITY 1,
    INDEX idx_ssdeep_norm ssdeep_smali_normalized TYPE bloom_filter GRANULARITY 1,
    INDEX idx_tlsh_norm tlsh_smali_normalized TYPE bloom_filter GRANULARITY 1
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY smali_method_hash;
```

## Table 6: `code_apk_cfg_methods`

**Analog:** `code_binja_cfg_functions` (see `db_migration/cfg_functions_ddl.sql`)

Structural and topological features computed from smali CFG. All fields mirror
the Binja table with APK-appropriate naming.

```sql
CREATE TABLE IF NOT EXISTS code_apk_cfg_methods (
    -- Identity
    smali_method_hash FixedString(64),

    -- Tier 0: Exact structural match
    cfg_topology_hash FixedString(16),

    -- Tier 1: Structural pre-filtering
    block_count UInt16,
    edge_count UInt16,
    cfg_instructions_count UInt32,            -- Dalvik instruction count (analog: llil_total_operations)
    call_count UInt16,
    cyclomatic_complexity UInt16,
    loop_count UInt16,
    max_depth UInt16,
    max_fan_out UInt16,
    md_index_topdown UInt64,
    md_index_bottomup UInt64,
    prime_product_smali UInt64,              -- Dalvik semantic primes (analog: prime_product_llil)

    -- Tier 2: Fuzzy matching
    cfg_feature_tlsh Nullable(FixedString(72)),
    wl_minhash Array(UInt8),

    -- Embedding-ready storage
    bb_features Array(Array(UInt16)),        -- ACFG block feature vectors
    cfg_adjacency Array(UInt32),             -- Packed (src << 16 | tgt)

    analysis_date DateTime64(3, 'UTC'),

    -- Indexes
    INDEX idx_topology cfg_topology_hash TYPE bloom_filter GRANULARITY 1,
    INDEX idx_complexity cyclomatic_complexity TYPE minmax GRANULARITY 4,
    INDEX idx_block_count block_count TYPE minmax GRANULARITY 4,
    INDEX idx_edge_count edge_count TYPE minmax GRANULARITY 4,
    INDEX idx_call_count call_count TYPE minmax GRANULARITY 4,
    INDEX idx_cfg_instr_count cfg_instructions_count TYPE minmax GRANULARITY 4,
    INDEX idx_loop_count loop_count TYPE minmax GRANULARITY 4,
    INDEX idx_max_depth max_depth TYPE minmax GRANULARITY 4,
    INDEX idx_max_fan_out max_fan_out TYPE minmax GRANULARITY 4,
    INDEX idx_md_topdown md_index_topdown TYPE minmax GRANULARITY 4,
    INDEX idx_md_bottomup md_index_bottomup TYPE minmax GRANULARITY 4,
    INDEX idx_prime prime_product_smali TYPE bloom_filter GRANULARITY 1,
    INDEX idx_cfg_tlsh cfg_feature_tlsh TYPE bloom_filter GRANULARITY 1
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY smali_method_hash;
```

**Column mapping (APK → Binja):**

| APK column | Binja column | Notes |
|------------|-------------|-------|
| `smali_method_hash` | `disassembled_function_hash` | Both SHA-256 of normalized code |
| `cfg_instructions_count` | `llil_total_operations` | Dalvik instructions vs LLIL operations |
| `prime_product_smali` | `prime_product_llil` | Same prime algorithm, Dalvik semantic categories |
| All others | Same name | Identical algorithms from shared `cfg_features.py` |

## Table 7: `code_binja_strings_raw` (shared)

APK strings are inserted into the existing `code_binja_strings_raw` Null-engine table,
which feeds materialized views (`code_binja_strings_by_binary`, `mv_string_popularity_public`).
This enables cross-format string correlation between PE/ELF/Mach-O/APK samples.

No new table creation needed — see `docs/new-code-binja-schema.md` for the existing DDL.

## Table 8: `code_apk_analysis_errors`

**Analog:** `function_analysis_errors_binja`

```sql
CREATE TABLE IF NOT EXISTS code_apk_analysis_errors (
    sha256 FixedString(64),
    class_name Nullable(String) CODEC(ZSTD(3)),
    method_name Nullable(String) CODEC(ZSTD(3)),
    error_location LowCardinality(String) CODEC(ZSTD(3)),   -- 'jadx', 'apktool', 'androguard', 'analysis'
    error_message Nullable(String) CODEC(ZSTD(3)),
    error_type Nullable(String) CODEC(ZSTD(3)),
    error_hash FixedString(32),                               -- MD5 for dedup
    status Enum8('new' = 1, 'investigating' = 2, 'fixed' = 3, 'wontfix' = 4) DEFAULT 'new',
    analysis_date DateTime64(3, 'UTC')
) ENGINE = MergeTree()
ORDER BY (sha256, error_location, error_hash);
```