Kary A. C. S. Ocaña

56 papers B 1C 1Misc 1Journal 18Unranked 34

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Assuming the best: Towards a reliable protocol for resource usage prediction for high-performance computing based on machine learning. Future Gener. Comput. Syst. Alexandre H. L. Porto, Micaella Coelho, Hiago Mayk G. de A. Rocha, Carla Osthoff, Kary A. C. S. Ocaña, Douglas de O. Cardoso
2023	—	`conf`	An Exploratory Study of Deep Learning for Predicting Computational Tasks Behavior in HPC Systems. SBAC-PADW Alexandre H. L. Porto, Micaella Coelho, Kary A. C. S. Ocaña, Carla Osthoff, Francieli Boito, Douglas de O. Cardoso
2022	J	`jnl`	Parallel Performance and I/O Profiling of HPC RNA-Seq Applications. Computación y Sistemas Lucas Cruz, Micaella Coelho, Marcelo Galheigo, André Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff, Kary A. C. S. Ocaña
2022	—	`conf`	ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for Studies of Differentiated Gene Expression. CARLA Kary A. C. S. Ocaña, Lucas Cruz, Micaella Coelho, Rafael Terra, Marcelo Galheigo, Andre Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff
2020	J	`jnl`	BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. Future Gener. Comput. Syst. Kary A. C. S. Ocaña, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Fábio Porto, Antônio Tadeu A. Gomes, Daniel de Oliveira, Ana Tereza Ribeiro de Vasconcelos
2020	J	`jnl`	Capturing and Analyzing Provenance from Spark-based Scientific Workflows with SAMbA-RaP. Future Gener. Comput. Syst. Thaylon Guedes, Lucas Bertelli Martins, Maria Luiza Furtuozo Falci, Vítor Silva, Kary A. C. S. Ocaña, Marta Mattoso, Marcos V. N. Bedo, Daniel de Oliveira
2020	J	`jnl`	Provenance-based fault tolerance technique recommendation for cloud-based scientific workflows: a practical approach. Clust. Comput. Thaylon Guedes, Leonardo Araújo de Jesus, Kary A. C. S. Ocaña, Lúcia M. A. Drummond, Daniel de Oliveira
2020	—	`conf`	Xi-DL: um Sistema de Gerência de Data Lake para Monitoramento de Dados da Saúde. SBBD Lucas Tito, Cristina Motinha, Filipe Santiago, Kary A. C. S. Ocaña, Marcos V. N. Bedo, Daniel de Oliveira
2019	J	`jnl`	A provenance-based heuristic for preserving results confidentiality in cloud-based scientific workflows. Future Gener. Comput. Syst. Marcos A. Guerine, Murilo B. Stockinger, Isabel Rosseti, Luidi Gelabert Simonetti, Kary A. C. S. Ocaña, Alexandre Plastino, Daniel de Oliveira
2019	—	`conf`	Análise Integrada de Grafos de Proveniência Heterogêneos por meio de uma Abordagem PolyStore. SBBD Yan Mendes, Victor Ströele, Daniel de Oliveira, Kary A. C. S. Ocaña
2019	—	`conf`	ArrOW: Experiencing a Parallel Cloud-Based De Novo Assembler Workflow. IPDPS Workshops Kary A. C. S. Ocaña, Thaylon Guedes, Daniel de Oliveira
2019	—	`conf`	Performance Evaluation of Parallel Inference of Large Phylogenetic Trees in Santos Dumont Supercomputer: A Practical Approach. CARLA Kary A. C. S. Ocaña, Carla Osthoff, Micaella Coelho, Marcelo Galheigo, Isabela Canuto, Douglas E. M. de Oliveira, Daniel de Oliveira
2019	—	`conf`	Um Estudo Comparativo de Mecanismos de Privacidade Diferencial sobre um Dataset de Ocorrências do ZIKV no Brasil. SBBD Daniel de Oliveira, Eduardo Rodrigues Duarte Neto, Serafim Costa, Paulo Roberto Pessoa Amora, Asley Caldas, Marco Horta, Ana Maria de Fillippis, Kary A. C. S. Ocaña, Vânia Maria P. Vidal, Javam C. Machado
2018	J	`jnl`	BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. CoRR Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian T. Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza Ribeiro de Vasconcelos, Kary A. C. S. Ocaña, Luiz M. R. Gadelha Jr.
2018	—	`conf`	Scientific Data Analysis Using Data-Intensive Scalable Computing: The SciDISC Project. LADaS@VLDB Patrick Valduriez, Marta Mattoso, Reza Akbarinia, Heraldo Borges, José J. Camata, Alvaro L. G. A. Coutinho, Daniel Gaspar, Noel Moreno Lemus, Ji Liu, Hermano Lustosa, Florent Masseglia, Fabrício Nogueira da Silva, Vítor Silva, Renan Souza, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Daniel de Oliveira, Esther Pacitti, Fábio Porto, Dennis E. Shasha
2017	J	`jnl`	Deriving scientific workflows from algebraic experiment lines: A practical approach. Future Gener. Comput. Syst. Anderson Marinho, Daniel de Oliveira, Eduardo S. Ogasawara, Vítor Silva, Kary A. C. S. Ocaña, Leonardo Murta, Vanessa Braganholo, Marta Mattoso
2017	J	`jnl`	Managing Provenance of Implicit Data Flows in Scientific Experiments. ACM Trans. Internet Techn. Vitor C. Neves, Daniel de Oliveira, Kary A. C. S. Ocaña, Vanessa Braganholo, Leonardo Murta
2017	—	`ch.`	Mirror Mirror on the Wall, How Do I Dimension My Cloud After All? Cloud Computing, 2nd Ed. Rafaelli de C. Coutinho, Yuri Frota, Kary A. C. S. Ocaña, Daniel de Oliveira, Lúcia M. A. Drummond
2017	J	`jnl`	Querying Provenance along with External Domain Data Using Prolog. J. Inf. Data Manag. Wellington Moreira de Oliveira, Kary A. C. S. Ocaña, Daniel de Oliveira, Vanessa Braganholo
2017	—	`conf`	SciAgile: Aplicação de Metodologias Ágeis em Experimentos Científicos Baseados em Simulação. CIbSE Augusto Romeiro, Kary A. C. S. Ocaña, Marcos Kalinowski, Daniel de Oliveira
2017	—	`conf`	Towards preserving results confidentiality in cloud-based scientific workflows. WORKS@SC Isabel Rosseti, Kary A. C. S. Ocaña, Daniel de Oliveira
2016	J	`jnl`	A Dynamic Cloud Dimensioning Approach for Parallel Scientific Workflows: a Case Study in the Comparative Genomics Domain. J. Grid Comput. Rafaelli de C. Coutinho, Yuri Frota, Kary A. C. S. Ocaña, Daniel de Oliveira, Lúcia M. A. Drummond
2016	—	`conf`	Analyzing Provenance Across Heterogeneous Provenance Graphs. IPAW Wellington Moreira de Oliveira, Paolo Missier, Kary A. C. S. Ocaña, Daniel de Oliveira, Vanessa Braganholo
2016	—	`conf`	Gerência de Incerteza em Bancos de Dados de Proveniência de Workflows de Bioinformática. SBBD Gustavo Tallarida, Kary A. C. S. Ocaña, Aline Paes, Vanessa Braganholo, Daniel de Oliveira
2016	—	`conf`	Um Sistema de Informação para Gerência de Projetos Científicos baseados em Simulações Computacionais [An IS for Managing Scientific Projects]. SBSI Leonardo S. Ramos, Kary A. C. S. Ocaña, Daniel Oliveira
2015	B	`conf`	Data Analytics in Bioinformatics: Data Science in Practice for Genomics Analysis Workflows. e-Science Kary A. C. S. Ocaña, Vítor Silva, Daniel de Oliveira, Marta Mattoso
2015	J	`jnl`	Dynamic steering of HPC scientific workflows: A survey. Future Gener. Comput. Syst. Marta Mattoso, Jonas Dias, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Flavio Costa, Felipe Horta, Vítor Silva, Daniel de Oliveira
2015	—	`conf`	Uma Abordagem para Publicação de Dados de Proveniência de Workflows Científicos na Web Semântica. SBBD (Short Papers) Rachel Castro, Renan Souza, Vítor Silva, Kary A. C. S. Ocaña, Daniel de Oliveira, Marta Mattoso
2014	—	`conf`	Captura e Consulta a Dados de Proveniência Retrospectiva Implícita Intra-Atividade. SBBD Wellington Moreira de Oliveira, Vitor C. Neves, Kary A. C. S. Ocaña, Leonardo Murta, Daniel de Oliveira, Vanessa Braganholo
2014	—	`conf`	Debugging Scientific Workflows with Provenance: Achievements and Lessons Learned. SBBD Daniel de Oliveira, Flavio Costa, Vítor Silva, Kary A. C. S. Ocaña, Marta Mattoso
2014	C	`conf`	Evaluating Grasp-based cloud dimensioning for comparative genomics: A practical approach. CLUSTER Rafaelli de C. Coutinho, Lúcia M. A. Drummond, Yuri Frota, Daniel de Oliveira, Kary A. C. S. Ocaña
2014	—	`conf`	Exploiting the Parallel Execution of Homology Workflow Alternatives in HPC Compute Clouds. ICSOC Workshops Kary A. C. S. Ocaña, Daniel de Oliveira, Vítor Silva, Silvia Benza, Marta Mattoso
2014	—	`conf`	Exploring Large Scale Receptor-Ligand Pairs in Molecular Docking Workflows in HPC Clouds. IPDPS Workshops Kary A. C. S. Ocaña, Silvia Benza, Daniel de Oliveira, Jonas Dias, Marta Mattoso
2014	—	`conf`	Towards Supporting Provenance Gathering and Querying in Different Database Approaches. IPAW Flavio Costa, Vítor Silva, Daniel de Oliveira, Kary A. C. S. Ocaña, Marta Mattoso
2013	—	`conf`	Capturing and querying workflow runtime provenance with PROV: a practical approach. EDBT/ICDT Workshops Flavio Costa, Vítor Silva, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso
2013	J	`jnl`	Designing a parallel cloud based comparative genomics workflow to improve phylogenetic analyses. Future Gener. Comput. Syst. Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso
2013	—	`conf`	Dimensioning the virtual cluster for parallel scientific workflows in clouds. ScienceCloud@HPDC Daniel de Oliveira, Vitor Viana, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Marta Mattoso
2013	J	`jnl`	Performance Analysis of Data Filtering in Scientific Workflows. J. Inf. Data Manag. João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso
2013	J	`jnl`	Performance evaluation of parallel strategies in public clouds: A study with phylogenomic workflows. Future Gener. Comput. Syst. Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, João Carlos de A. R. Gonçalves, Fernanda Araújo Baião, Marta Mattoso
2013	—	`conf`	Provenance traces from Chiron parallel workflow engine. EDBT/ICDT Workshops Felipe Horta, Vítor Silva, Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso
2013	Misc	`conf`	Runtime Dynamic Structural Changes of Scientific Workflows in Clouds. UCC Igor Dos Santos, Jonas Dias, Daniel de Oliveira, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Marta Mattoso
2013	—	`conf`	SciLightning: A Cloud Provenance-Based Event Notification for Parallel Workflows. ICSOC Workshops Julliano Trindade Pintas, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso
2013	—	`conf`	User-steering of HPC workflows: state-of-the-art and future directions. SWEET@SIGMOD Marta Mattoso, Kary A. C. S. Ocaña, Felipe Horta, Jonas Dias, Eduardo S. Ogasawara, Vítor Silva, Daniel de Oliveira, Flavio Costa, Igor Araújo
2012	J	`jnl`	A Provenance-based Adaptive Scheduling Heuristic for Parallel Scientific Workflows in Clouds. J. Grid Comput. Daniel de Oliveira, Kary A. C. S. Ocaña, Fernanda Araújo Baião, Marta Mattoso
2012	—	`conf`	Abstract: Using Provenance to Visualize Data from Large-Scale Experiments. SC Companion Felipe Horta, Jonas Dias, Kary A. C. S. Ocaña, Daniel de Oliveira, Eduardo S. Ogasawara, Marta Mattoso
2012	J	`jnl`	An adaptive parallel execution strategy for cloud-based scientific workflows. Concurr. Comput. Pract. Exp. Daniel de Oliveira, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Fernanda Araújo Baião, Marta Mattoso
2012	—	`conf`	Discovering drug targets for neglected diseases using a pharmacophylogenomic cloud workflow. eScience Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso
2012	—	`conf`	Enabling Re-executions of Parallel Scientific Workflows Using Runtime Provenance Data. IPAW Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso
2012	—	`conf`	Exploring Molecular Evolution Reconstruction Using a Parallel Cloud Based Scientific Workflow. BSB Kary A. C. S. Ocaña, Daniel de Oliveira, Felipe Horta, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso
2012	—	`conf`	Handling Failures in Parallel Scientific Workflows Using Clouds. SC Companion Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso
2012	—	`conf`	Using Domain-Specific Data to Enhance Scientific Workflow Steering Queries. IPAW João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso
2012	—	`conf`	Using Provenance Analyzers to Improve the Performance of Scientific Workflows in Cloud Environments. SBBD (Short Papers) João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso
2011	—	`conf`	A Performance Evaluation of X-Ray Crystallography Scientific Workflow Using SciCumulus. IEEE CLOUD Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Fernanda Araújo Baião, Marta Mattoso
2011	—	`conf`	Optimizing Phylogenetic Analysis Using SciHmm Cloud-based Scientific Workflow. eScience Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso
2011	—	`conf`	SciPhy: A Cloud-Based Workflow for Phylogenetic Analysis of Drug Targets in Protozoan Genomes. BSB Kary A. C. S. Ocaña, Daniel de Oliveira, Eduardo S. Ogasawara, Alberto M. R. Dávila, Alexandre A. B. Lima, Marta Mattoso
2008	J	`jnl`	ProtozoaDB: dynamic visualization and exploration of protozoan genomes. Nucleic Acids Res. Alberto M. R. Dávila, Pablo N. Mendes, Glauber Wagner, Diogo A. Tschoeke, Rafael R. C. Cuadrat, Felipe Liberman, Luciana Matos, Thiago S. Satake, Kary A. C. S. Ocaña, Omar Triana, Sérgio Manuel Serra da Cruz, Henrique C. L. Jucá, Juliano C. Cury, Fabrício Nogueira da Silva, Guilherme A. Geronimo, Margarita Ruiz, Eduardo Ruback, Floriano P. Silva Jr., Christian M. Probst, Edmundo C. Grisard, Marco A. Krieger, Samuel Goldenberg, Maria Cláudia Reis Cavalcanti, Milton O. Moraes, Maria Luiza Machado Campos, Marta Mattoso