Karthik Raman

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
J. Cheminformatics
Abhor Gupta, Barathi Lenin, Sean Current, Rohit Batra, Balaraman Ravindran, Karthik Raman, Srinivasan Parthasarathy
2022 J jnl
PLoS Comput. Biol.
Priyan Bhattacharya, Karthik Raman, Arun K. Tangirala
2020 J jnl
CoRR
Anand A. Rajasekar, Karthik Raman, Balaraman Ravindran
2020 J jnl
Bioinform.
Gayathri Sambamoorthy, Karthik Raman
2018 J jnl
Bioinform.
Gayathri Sambamoorthy, Karthik Raman
2017 J jnl
Bioinform.
Aravind Sankar, Sayan Ranu, Karthik Raman
2015 J jnl
Briefings Bioinform.
Aarthi Ravikrishnan, Karthik Raman
2015 J jnl
Bioinform.
Aditya Pratapa, Shankar Balachandran, Karthik Raman
2015 J jnl
Proc. VLDB Endow.
Dharma Shukla, Shireesh Thota, Karthik Raman, Madhan Gajendran, Ankur Shah, Sergii Ziuzin, Krishnan Sundaram, Miguel Gonzalez Guajardo, Anna Wawrzyniak, Samer Boshra, Renato Ferreira, Mohamed Nassar, Michael Koltachev, Ji Huang, Sudipta Sengupta, Justin J. Levandoski, David B. Lomet
2013 J jnl
Comput. Biol. Chem.
Anuja Kulkarni, Laxmi Ananthanarayan, Karthik Raman
2009 J jnl
Briefings Bioinform.
Karthik Raman, Nagasuma R. Chandra
2008 J jnl
BMC Syst. Biol.
Karthik Raman, Kalidas Yeturu, Nagasuma R. Chandra
2005 J jnl
PLoS Comput. Biol.
Karthik Raman, Preethi Rajagopalan, Nagasuma R. Chandra
docker-build.sh
← Index docker-build.sh bash
#!/bin/bash

set -e

echo "Building REDB Docker image for linux/amd64 platform..."

# Function to tag the most recent <none> image
tag_unnamed_image() {
    local tag_name=$1
    local expected_size=$2
    
    # Get the most recent <none> image
    local image_id=$(docker images --filter "dangling=true" --format "{{.ID}}" | head -1)
    
    if [ -z "$image_id" ]; then
        echo "ERROR: No unnamed image found. Build may have failed."
        return 1
    fi
    
    local actual_size=$(docker images --format "table {{.ID}}\t{{.Size}}" | grep $image_id | awk '{print $2}')
    echo "Found image $image_id with size: $actual_size (expected: $expected_size)"
    
    # Tag the image
    echo "Tagging as $tag_name..."
    docker tag $image_id $tag_name
    
    return 0
}

# Build single unified image
echo ""
echo "Building REDB unified image - Supports both feature extraction and decompilation..."
echo "NOTE: If build hangs at 'exporting to image', press Ctrl+C - the image will still be created!"
echo ""

docker build --platform linux/amd64 -f Dockerfile -t redb:latest . || echo "Build interrupted (this is expected due to Docker Desktop bug)"

# Tag the image if it was built as unnamed
if docker images --filter "dangling=true" --format "{{.ID}}" | head -1 | grep -q "."; then
    tag_unnamed_image "redb:latest" "500MB"
fi

echo ""
echo "Docker build completed!"
echo ""
echo "Available images:"
docker images | grep redb

echo ""
echo "Image size:"
echo "REDB unified image: $(docker images redb:latest --format "{{.Size}}")"

echo ""
echo "Usage:"
echo "  Feature extraction: docker run redb:latest python3 start.py --nomad-job"
echo "  Decompilation:      docker run redb:latest python3 start.py --nomad-job --decompile"
echo "  Custom modules:     docker run redb:latest python3 start.py --nomad-job --modules BasicPropertiesExtractor,PEFeaturesExtractor"