Karthik Gopinath

39 papers A* 1Journal 26Unranked 11
YearRankTypeTitle / Venue / Authors
2026 — ed.
Shape in Medical Imaging - International Workshop, ShapeMI 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings
ShapeMI@MICCAI
Christian Wachinger, Gijs Luijten, Shireen Y. Elhabian, Karthik Gopinath, Jan Egger
2025 J jnl
"Recon-all-clinical": Cortical surface reconstruction and analysis of heterogeneous clinical brain MRI.
Medical Image Anal.
Karthik Gopinath, Douglas N. Greve, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Oula Puonti, Juan Eugenio Iglesias
2025 J jnl
A Modality-agnostic Multi-task Foundation Model for Human Brain Imaging.
CoRR
Peirong Liu, Oula Puonti, Xiaoling Hu, Karthik Gopinath, Annabel Sorby-Adams, Daniel C. Alexander, W. Taylor Kimberly, Juan Eugenio Iglesias
2025 J jnl
Automated Segmentation of Coronal Brain Tissue Slabs for 3D Neuropathology.
CoRR
Jonathan Williams Ramirez, Dina Zemlyanker, Lucas J. Deden-Binder, Rogeny Herisse, Erendira Garcia Pallares, Karthik Gopinath, Harshvardhan Gazula, Christopher Mount, Liana Kozanno, Michael S. Marshall, Theresa R. Connors, Matthew P. Frosch, Mark Montine, Derek H. Oakley, Christine L. Mac Donald, C. Dirk Keene, Bradley T. Hyman, Juan Eugenio Iglesias
2025 — conf
End-to-End Cortical Surface Reconstruction from Clinical Magnetic Resonance Images.
MLMI@MICCAI
Jesper Duemose Nielsen, Karthik Gopinath, Andrew Hoopes, Adrian V. Dalca, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Axel Thielscher, Juan Eugenio Iglesias, Oula Puonti
2025 J jnl
End-to-end Cortical Surface Reconstruction from Clinical Magnetic Resonance Images.
CoRR
Jesper Duemose Nielsen, Karthik Gopinath, Andrew Hoopes, Adrian V. Dalca, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Axel Thielscher, Juan Eugenio Iglesias, Oula Puonti
2025 J jnl
From Low Field to High Value: Robust Cortical Mapping from Low-Field MRI.
CoRR
Karthik Gopinath, Annabel Sorby-Adams, Jonathan Williams Ramirez, Dina Zemlyanker, Jennifer Guo, David Hunt, Christine L. Mac Donald, C. Dirk Keene, Timothy S. Coalson, Matthew F. Glasser, David C. Van Essen, Matthew S. Rosen, Oula Puonti, W. Taylor Kimberly, Juan Eugenio Iglesias
2025 A* conf
Hierarchical Uncertainty Estimation for Learning-based Registration in Neuroimaging.
ICLR
Xiaoling Hu, Karthik Gopinath, Peirong Liu, Malte Hoffmann, Koen Van Leemput, Oula Puonti, Juan Eugenio Iglesias
2025 J jnl
JParc: Joint cortical surface parcellation with registration.
CoRR
Jian Li, Karthik Gopinath, Brian L. Edlow, Adrian V. Dalca, Bruce Fischl
2025 — conf
UNSURF: Uncertainty Quantification for Cortical Surface Reconstruction of Clinical Brain MRIs.
MICCAI (16)
Karthik Gopinath, Raghav Mehta, Ben Glocker, Juan Eugenio Iglesias
2025 J jnl
UNSURF: Uncertainty Quantification for Cortical Surface Reconstruction of Clinical Brain MRIs.
CoRR
Raghav Mehta, Karthik Gopinath, Ben Glocker, Juan Eugenio Iglesias
2024 J jnl
Hierarchical uncertainty estimation for learning-based registration in neuroimaging.
CoRR
Xiaoling Hu, Karthik Gopinath, Peirong Liu, Malte Hoffmann, Koen Van Leemput, Oula Puonti, Juan Eugenio Iglesias
2024 — conf
Pseudo-rendering for Resolution and Topology-Invariant Cortical Parcellation.
MLMI@MICCAI (2)
Pablo Blasco Fernandez, Karthik Gopinath, John Williams-Ramirez, Rogeny Herisse, Lucas J. Deden-Binder, Dina Zemlyanker, Theressa Connors, Liana Kozanno, Derek H. Oakley, Bradley T. Hyman, Sean I. Young, Juan Eugenio Iglesias
2024 J jnl
Recon-all-clinical: Cortical surface reconstruction and analysis of heterogeneous clinical brain MRI.
CoRR
Karthik Gopinath, Douglas N. Greve, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Oula Puonti, Juan Eugenio Iglesias
2024 — conf
Registration by Regression (RbR): A Framework for Interpretable and Flexible Atlas Registration.
WBIR
Karthik Gopinath, Xiaoling Hu, Malte Hoffmann, Oula Puonti, Juan Eugenio Iglesias
2024 J jnl
Registration by Regression (RbR): a framework for interpretable and flexible atlas registration.
CoRR
Karthik Gopinath, Xiaoling Hu, Malte Hoffmann, Oula Puonti, Juan Eugenio Iglesias
2023 — conf
Cortical Analysis of Heterogeneous Clinical Brain MRI Scans for Large-Scale Neuroimaging Studies.
MICCAI (8)
Karthik Gopinath, Douglas N. Greve, Sudeshna Das, Steven E. Arnold, Colin G. Magdamo, Juan Eugenio Iglesias
2023 J jnl
Cortical analysis of heterogeneous clinical brain MRI scans for large-scale neuroimaging studies.
CoRR
Karthik Gopinath, Douglas N. Greve, Sudeshna Das, Steven E. Arnold, Colin G. Magdamo, Juan Eugenio Iglesias
2023 J jnl
Learning joint surface reconstruction and segmentation, from brain images to cortical surface parcellation.
Medical Image Anal.
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2022 J jnl
Learnable Pooling in Graph Convolutional Networks for Brain Surface Analysis.
IEEE Trans. Pattern Anal. Mach. Intell.
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2021 — conf
SegRecon: Learning Joint Brain Surface Reconstruction and Segmentation from Images.
MICCAI (7)
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2020 — conf
Graph Domain Adaptation for Alignment-Invariant Brain Surface Segmentation.
UNSURE/GRAIL@MICCAI
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2020 J jnl
Graph Domain Adaptation for Alignment-Invariant Brain Surface Segmentation.
CoRR
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2020 — conf
Spectral Graph Transformer Networks for Brain Surface Parcellation.
ISBI
Ran He, Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2019 — conf
Adaptive Graph Convolution Pooling for Brain Surface Analysis.
IPMI
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2019 J jnl
Graph Convolutions on Spectral Embeddings for Cortical Surface Parcellation.
Medical Image Anal.
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2019 J jnl
HyperDense-Net: A Hyper-Densely Connected CNN for Multi-Modal Image Segmentation.
IEEE Trans. Medical Imaging
Jose Dolz, Karthik Gopinath, Jing Yuan, Herve Lombaert, Christian Desrosiers, Ismail Ben Ayed
2019 J jnl
Learnable Pooling in Graph Convolution Networks for Brain Surface Analysis.
CoRR
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2019 J jnl
RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge.
IEEE Trans. Medical Imaging
Hrvoje Bogunovic, Freerk G. Venhuizen, Sophie Klimscha, Stefanos Apostolopoulos, Alireza Bab-Hadiashar, Ulas Bagci, Mirza Faisal Beg, Loza Bekalo, Qiang Chen, Carlos Ciller, Karthik Gopinath, Amirali K. Gostar, Kiwan Jeon, Zexuan Ji, Sung Ho Kang, Dara D. Koozekanani, Donghuan Lu, Dustin Morley, Keshab K. Parhi, Hyoung Suk Park, Abdolreza Rashno, Marinko Sarunic, Saad Shaikh, Jayanthi Sivaswamy, Ruwan B. Tennakoon, Shivin Yadav, Sandro De Zanet, Sebastian M. Waldstein, Bianca S. Gerendas, Caroline Klaver, Clara I. Sánchez, Ursula Schmidt-Erfurth
2019 J jnl
Segmentation of Retinal Cysts From Optical Coherence Tomography Volumes Via Selective Enhancement.
IEEE J. Biomed. Health Informatics
Karthik Gopinath, Jayanthi Sivaswamy
2019 J jnl
Spectral Graph Transformer Networks for Brain Surface Parcellation.
CoRR
Ran He, Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2018 J jnl
A deep learning framework for segmentation of retinal layers from OCT images.
CoRR
Karthik Gopinath, Samrudhdhi B. Rangrej, Jayanthi Sivaswamy
2018 J jnl
Graph Convolutions on Spectral Embeddings: Learning of Cortical Surface Data.
CoRR
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2018 J jnl
HyperDense-Net: A hyper-densely connected CNN for multi-modal image segmentation.
CoRR
Jose Dolz, Karthik Gopinath, Jing Yuan, Herve Lombaert, Christian Desrosiers, Ismail Ben Ayed
2017 — conf
A Deep Learning Framework for Segmentation of Retinal Layers from OCT Images.
ACPR
Karthik Gopinath, Samrudhdhi B. Rangrej, Jayanthi Sivaswamy
2017 J jnl
A Generalized Motion Pattern and FCN based approach for retinal fluid detection and segmentation.
CoRR
Shivin Yadav, Karthik Gopinath, Jayanthi Sivaswamy
2017 J jnl
Segmentation of retinal cysts from Optical Coherence Tomography volumes via selective enhancement.
CoRR
Karthik Gopinath, Jayanthi Sivaswamy
2016 — conf
Automatic glaucoma assessment from angio-OCT images.
ISBI
Karthik Gopinath, Jayanthi Sivaswamy, Tarannum Mansoori
2016 J jnl
Domain knowledge assisted cyst segmentation in OCT retinal images.
CoRR
Karthik Gopinath, Jayanthi Sivaswamy