Karthik Gopinath

39 papers A* 1Journal 26Unranked 11
YearRankTypeTitle / Venue / Authors
2026 ed.
ShapeMI@MICCAI
Christian Wachinger, Gijs Luijten, Shireen Y. Elhabian, Karthik Gopinath, Jan Egger
2025 J jnl
Medical Image Anal.
Karthik Gopinath, Douglas N. Greve, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Oula Puonti, Juan Eugenio Iglesias
2025 J jnl
CoRR
Peirong Liu, Oula Puonti, Xiaoling Hu, Karthik Gopinath, Annabel Sorby-Adams, Daniel C. Alexander, W. Taylor Kimberly, Juan Eugenio Iglesias
2025 J jnl
CoRR
Jonathan Williams Ramirez, Dina Zemlyanker, Lucas J. Deden-Binder, Rogeny Herisse, Erendira Garcia Pallares, Karthik Gopinath, Harshvardhan Gazula, Christopher Mount, Liana Kozanno, Michael S. Marshall, Theresa R. Connors, Matthew P. Frosch, Mark Montine, Derek H. Oakley, Christine L. Mac Donald, C. Dirk Keene, Bradley T. Hyman, Juan Eugenio Iglesias
2025 conf
MLMI@MICCAI
Jesper Duemose Nielsen, Karthik Gopinath, Andrew Hoopes, Adrian V. Dalca, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Axel Thielscher, Juan Eugenio Iglesias, Oula Puonti
2025 J jnl
CoRR
Jesper Duemose Nielsen, Karthik Gopinath, Andrew Hoopes, Adrian V. Dalca, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Axel Thielscher, Juan Eugenio Iglesias, Oula Puonti
2025 J jnl
CoRR
Karthik Gopinath, Annabel Sorby-Adams, Jonathan Williams Ramirez, Dina Zemlyanker, Jennifer Guo, David Hunt, Christine L. Mac Donald, C. Dirk Keene, Timothy S. Coalson, Matthew F. Glasser, David C. Van Essen, Matthew S. Rosen, Oula Puonti, W. Taylor Kimberly, Juan Eugenio Iglesias
2025 A* conf
ICLR
Xiaoling Hu, Karthik Gopinath, Peirong Liu, Malte Hoffmann, Koen Van Leemput, Oula Puonti, Juan Eugenio Iglesias
2025 J jnl
CoRR
Jian Li, Karthik Gopinath, Brian L. Edlow, Adrian V. Dalca, Bruce Fischl
2025 conf
MICCAI (16)
Karthik Gopinath, Raghav Mehta, Ben Glocker, Juan Eugenio Iglesias
2025 J jnl
CoRR
Raghav Mehta, Karthik Gopinath, Ben Glocker, Juan Eugenio Iglesias
2024 J jnl
CoRR
Xiaoling Hu, Karthik Gopinath, Peirong Liu, Malte Hoffmann, Koen Van Leemput, Oula Puonti, Juan Eugenio Iglesias
2024 conf
MLMI@MICCAI (2)
Pablo Blasco Fernandez, Karthik Gopinath, John Williams-Ramirez, Rogeny Herisse, Lucas J. Deden-Binder, Dina Zemlyanker, Theressa Connors, Liana Kozanno, Derek H. Oakley, Bradley T. Hyman, Sean I. Young, Juan Eugenio Iglesias
2024 J jnl
CoRR
Karthik Gopinath, Douglas N. Greve, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Oula Puonti, Juan Eugenio Iglesias
2024 conf
WBIR
Karthik Gopinath, Xiaoling Hu, Malte Hoffmann, Oula Puonti, Juan Eugenio Iglesias
2024 J jnl
CoRR
Karthik Gopinath, Xiaoling Hu, Malte Hoffmann, Oula Puonti, Juan Eugenio Iglesias
2023 conf
MICCAI (8)
Karthik Gopinath, Douglas N. Greve, Sudeshna Das, Steven E. Arnold, Colin G. Magdamo, Juan Eugenio Iglesias
2023 J jnl
CoRR
Karthik Gopinath, Douglas N. Greve, Sudeshna Das, Steven E. Arnold, Colin G. Magdamo, Juan Eugenio Iglesias
2023 J jnl
Medical Image Anal.
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2022 J jnl
IEEE Trans. Pattern Anal. Mach. Intell.
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2021 conf
MICCAI (7)
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2020 conf
UNSURE/GRAIL@MICCAI
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2020 J jnl
CoRR
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2020 conf
ISBI
Ran He, Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2019 conf
IPMI
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2019 J jnl
Medical Image Anal.
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2019 J jnl
IEEE Trans. Medical Imaging
Jose Dolz, Karthik Gopinath, Jing Yuan, Herve Lombaert, Christian Desrosiers, Ismail Ben Ayed
2019 J jnl
CoRR
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2019 J jnl
IEEE Trans. Medical Imaging
Hrvoje Bogunovic, Freerk G. Venhuizen, Sophie Klimscha, Stefanos Apostolopoulos, Alireza Bab-Hadiashar, Ulas Bagci, Mirza Faisal Beg, Loza Bekalo, Qiang Chen, Carlos Ciller, Karthik Gopinath, Amirali K. Gostar, Kiwan Jeon, Zexuan Ji, Sung Ho Kang, Dara D. Koozekanani, Donghuan Lu, Dustin Morley, Keshab K. Parhi, Hyoung Suk Park, Abdolreza Rashno, Marinko Sarunic, Saad Shaikh, Jayanthi Sivaswamy, Ruwan B. Tennakoon, Shivin Yadav, Sandro De Zanet, Sebastian M. Waldstein, Bianca S. Gerendas, Caroline Klaver, Clara I. Sánchez, Ursula Schmidt-Erfurth
2019 J jnl
IEEE J. Biomed. Health Informatics
Karthik Gopinath, Jayanthi Sivaswamy
2019 J jnl
CoRR
Ran He, Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2018 J jnl
CoRR
Karthik Gopinath, Samrudhdhi B. Rangrej, Jayanthi Sivaswamy
2018 J jnl
CoRR
Karthik Gopinath, Christian Desrosiers, Herve Lombaert
2018 J jnl
CoRR
Jose Dolz, Karthik Gopinath, Jing Yuan, Herve Lombaert, Christian Desrosiers, Ismail Ben Ayed
2017 conf
ACPR
Karthik Gopinath, Samrudhdhi B. Rangrej, Jayanthi Sivaswamy
2017 J jnl
CoRR
Shivin Yadav, Karthik Gopinath, Jayanthi Sivaswamy
2017 J jnl
CoRR
Karthik Gopinath, Jayanthi Sivaswamy
2016 conf
ISBI
Karthik Gopinath, Jayanthi Sivaswamy, Tarannum Mansoori
2016 J jnl
CoRR
Karthik Gopinath, Jayanthi Sivaswamy
redb/extractors/elf_extractors/elf_imports.py
← Index redb/extractors/elf_extractors/elf_imports.py python
import inspect
from datetime import datetime, timezone
from typing import Any, List, Set

from elftools.elf.elffile import ELFFile
from elftools.common.exceptions import ELFError

from redb.extractors.enum import Tag
from redb.extractors.elf_extractor import ELFExtractor
from redb.models.dataclasses import ELFImport


class ELFImportExtractor(ELFExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        elf=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            elf,
        )
        self.elf_imports = None
        self.elastic_index = self.index_prefix + "-elf_imports"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def _get_import_libraries(self, elf) -> List[str]:
        """Extract imported libraries from dynamic section."""
        libraries = []

        try:
            # Get the dynamic section
            dynamic_section = elf.get_section_by_name('.dynamic')
            if not dynamic_section:
                return libraries

            # Extract DT_NEEDED entries (required libraries)
            for tag in dynamic_section.iter_tags():
                if tag.entry.d_tag == 'DT_NEEDED':
                    libraries.append(tag.needed)

        except Exception as e:
            self.log.error(f"Error extracting import libraries: {e}")

        return libraries

    def _get_imported_functions_from_symbols(self, elf) -> Set[str]:
        """Extract imported functions from dynamic symbol table."""
        imported_functions = set()

        try:
            # Get the dynamic symbol table
            dynsym_section = elf.get_section_by_name('.dynsym')
            if not dynsym_section or not hasattr(dynsym_section, 'iter_symbols'):
                return imported_functions

            # Look for undefined symbols (imports)
            for symbol in dynsym_section.iter_symbols():
                # Check if symbol is undefined (imported)
                if (symbol.entry.get('st_shndx', 0) == 'SHN_UNDEF' and
                    symbol.name and
                    symbol.entry.get('st_info', {}).get('bind') in ['STB_GLOBAL', 'STB_WEAK']):
                    imported_functions.add(symbol.name)

        except Exception as e:
            self.log.error(f"Error extracting imported functions from symbols: {e}")

        return imported_functions

    def _get_imported_functions_from_relocations(self, elf) -> Set[str]:
        """Extract imported functions from relocation sections."""
        imported_functions = set()

        try:
            # Look through relocation sections
            for section in elf.iter_sections():
                if hasattr(section, 'iter_relocations'):
                    try:
                        for relocation in section.iter_relocations():
                            # Get symbol associated with relocation
                            if hasattr(relocation, 'symbol') and relocation.symbol:
                                symbol_name = relocation.symbol.name
                                if symbol_name:
                                    imported_functions.add(symbol_name)
                    except Exception as e:
                        self.log.debug(f"Could not process relocations in section {section.name}: {e}")

        except Exception as e:
            self.log.error(f"Error extracting imported functions from relocations: {e}")

        return imported_functions

    def _get_plt_functions(self, elf) -> Set[str]:
        """Extract functions from PLT (Procedure Linkage Table) sections."""
        plt_functions = set()

        try:
            # Look for PLT-related sections
            plt_sections = ['.plt', '.plt.got', '.plt.sec']

            for section_name in plt_sections:
                section = elf.get_section_by_name(section_name)
                if section:
                    # PLT functions are typically associated with relocations
                    # We'll get them from the relocation analysis
                    pass

        except Exception as e:
            self.log.error(f"Error extracting PLT functions: {e}")

        return plt_functions

    def tag(self):
        return Tag.ELF_IMPORTS.value if hasattr(Tag, 'ELF_IMPORTS') else "elf_imports"

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)

            def extract_data(elf):
                # Extract import libraries
                import_libraries = self._get_import_libraries(elf)

                # Extract imported functions from multiple sources
                imported_functions = set()

                # From dynamic symbols
                symbol_imports = self._get_imported_functions_from_symbols(elf)
                imported_functions.update(symbol_imports)

                # From relocations
                relocation_imports = self._get_imported_functions_from_relocations(elf)
                imported_functions.update(relocation_imports)

                # From PLT
                plt_imports = self._get_plt_functions(elf)
                imported_functions.update(plt_imports)

                # Convert to sorted lists for consistent output
                import_libraries_list = sorted(list(set(import_libraries)))
                import_functions_list = sorted(list(imported_functions))

                # Return ELFImport dataclass
                return ELFImport(
                    elf_imports_total=len(import_functions_list),
                    elf_import_libraries=import_libraries_list,
                    elf_import_functions=import_functions_list,
                )

            if not self._is_elf_file():
                return None

            result = self._with_elf_file(extract_data)
            if result is None:
                return None

            self.elf_imports = result
            return self.elf_imports

        except Exception as e:
            self.log.error(f"Error extracting ELF imports {self.hash.sha256}: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        self.log.debug(inspect.currentframe().f_code.co_name)

        if exporter_type == "ElasticsearchExporter":
            return self.elf_imports
        elif exporter_type == "ClickHouseExporter":
            try:
                if not self.elf_imports:
                    return None

                # Prepare data array
                data = [[
                    self.sha256,
                    self.md5,
                    self.sha1,
                    self.elf_imports.elf_imports_total,
                    self.elf_imports.elf_import_libraries,
                    self.elf_imports.elf_import_functions,
                    datetime.now(timezone.utc)
                ]]

                column_names = [
                    'sha256', 'md5', 'sha1',
                    'elf_imports_total',
                    'elf_import_libraries',
                    'elf_import_functions',
                    'analysis_date'
                ]

                column_type_names = [
                    'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                    'UInt32',
                    'Array(LowCardinality(String))',
                    'Array(LowCardinality(String))',
                    'DateTime64(3, \'UTC\')'
                ]

                if not data:
                    return None

                return (data, column_names, column_type_names)

            except Exception as e:
                self.log.error(f"Error preparing export data: {e}")
                raise

    def get_clickhouse_table(self) -> str:
        return "redb_elf_imports"