Karsten Suhre

25 papers Misc 1Journal 22Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
SGI: automatic clinical subgroup identification in omics datasets.
Bioinform.
Mustafa Buyukozkan, Karsten Suhre, Jan Krumsiek
2022 J jnl
TIGER: technical variation elimination for metabolomics data using ensemble learning architecture.
Briefings Bioinform.
Siyu Han, Jialing Huang, Francesco Foppiano, Cornelia Prehn, Jerzy Adamski, Karsten Suhre, Ying Li, Giuseppe Matullo, Freimut Schliess, Christian Gieger, Annette Peters, Rui Wang-Sattler
2022 J jnl
maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinform.
Kelsey Chetnik, Elisa Benedetti, Daniel P. Gomari, Annalise Schweickart, Richa Batra, Mustafa Buyukozkan, Zeyu Wang, Matthias Arnold, Jonas Zierer, Karsten Suhre, Jan Krumsiek
2021 J jnl
Robust Huber-LASSO for improved prediction of protein, metabolite and gene expression levels relying on individual genotype data.
Briefings Bioinform.
Heike Deutelmoser, Dominique Scherer, Hermann Brenner, Melanie Waldenberger, Karsten Suhre, Gabi Kastenmüller, Justo Lorenzo Bermejo
2019 J jnl
MoDentify: phenotype-driven module identification in metabolomics networks at different resolutions.
Bioinform.
Kieu Trinh Do, David J. N. P. Rasp, Gabi Kastenmüller, Karsten Suhre, Jan Krumsiek
2018 J jnl
Genomic atlas of the human plasma proteome.
Nat.
Benjamin B. Sun, Joseph C. Maranville, James E. Peters, David Stacey, James R. Staley, James A. Blackshaw, Stephen Burgess, Tao Jiang, Ellie Paige, Praveen Surendran, Clare Oliver-Williams, Mihir A. Kamat, Bram P. Prins, Sheri K. Wilcox, Erik S. Zimmerman, An Chi, Narinder Bansal, Sarah L. Spain, Angela M. Wood, Nicholas W. Morrell, John R. Bradley, Nebojsa Janjic, David J. Roberts, Willem H. Ouwehand, John A. Todd, Nicole Soranzo, Karsten Suhre, Dirk S. Paul, Caroline S. Fox, Robert M. Plenge, John Danesh, Heiko Runz, Adam S. Butterworth
2017 J jnl
pulver: an R package for parallel ultra-rapid p-value computation for linear regression interaction terms.
BMC Bioinform.
Sophie Molnos, Clemens Baumbach, Simone Wahl, Martina Müller-Nurasyid, Konstantin Strauch, Rui Wang-Sattler, Melanie Waldenberger, Thomas Meitinger, Jerzy Adamski, Gabi Kastenmüller, Karsten Suhre, Annette Peters, Harald Grallert, Fabian J. Theis, Christian Gieger
2016 J jnl
A graph based method for depicting population characteristics using Genome Wide Data.
J. Comput. Sci.
Gaurav Thareja, Ziad Kronfol, Karsten Suhre, Pankaj Kumar
2014 J jnl
On the potential of models for location and scale for genome-wide DNA methylation data.
BMC Bioinform.
Simone Wahl, Nora Fenske, Sonja Zeilinger, Karsten Suhre, Christian Gieger, Melanie Waldenberger, Harald Grallert, Matthias Schmid
2013 Misc conf
MetFlexo: An Automated Simulation of Realistic H
ICCS
Zeinab Atieh, Karsten Suhre, Halima Bensmail
2012 J jnl
On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies.
BMC Bioinform.
Ann-Kristin Petersen, Jan Krumsiek, Brigitte Wägele, Fabian J. Theis, Heinz-Erich Wichmann, Christian Gieger, Karsten Suhre
2011 J jnl
Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data.
BMC Syst. Biol.
Jan Krumsiek, Karsten Suhre, Thomas Illig, Jerzy Adamski, Fabian J. Theis
2011 J jnl
MIPS: curated databases and comprehensive secondary data resources in 2010.
Nucleic Acids Res.
Hans-Werner Mewes, Andreas Ruepp, Fabian J. Theis, Thomas Rattei, Mathias C. Walter, Dmitrij Frishman, Karsten Suhre, Manuel Spannagl, Klaus F. X. Mayer, Volker Stümpflen, Alexey V. Antonov
2008 J jnl
MassTRIX: mass translator into pathways.
Nucleic Acids Res.
Karsten Suhre, Philippe Schmitt-Kopplin
2006 J jnl
Determination of strongly overlapping signaling activity from microarray data.
BMC Bioinform.
Ghislain Bidaut, Karsten Suhre, Jean-Michel Claverie, Michael F. Ochs
2006 J jnl
GFscore: A General Nonlinear Consensus Scoring Function for High-Throughput Docking.
J. Chem. Inf. Model.
Stéphane Betzi, Karsten Suhre, Bernard Chétrit, Françoise Guerlesquin, Xavier Morelli
2005 J jnl
Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis.
BMC Bioinform.
François Enault, Karsten Suhre, Jean-Michel Claverie
2004 J jnl
3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.
Nucleic Acids Res.
Olivier Poirot, Karsten Suhre, Chantal Abergel, Eamonn O'Toole, Cédric Notredame
2004 J jnl
CaspR: a web server for automated molecular replacement using homology modelling.
Nucleic Acids Res.
Jean-Baptiste Claude, Karsten Suhre, Cédric Notredame, Jean-Michel Claverie, Chantal Abergel
2004 J jnl
ElNémo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement.
Nucleic Acids Res.
Karsten Suhre, Yves-Henri Sanejouand
2004 J jnl
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events.
Nucleic Acids Res.
Karsten Suhre, Jean-Michel Claverie
2004 J jnl
Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis.
Nucleic Acids Res.
François Enault, Karsten Suhre, Olivier Poirot, Chantal Abergel, Jean-Michel Claverie
2003 — conf
Analysis of Phylogenetic Profiles Using Bayesian Decomposition.
CSB
Ghislain Bidaut, Karsten Suhre, Jean-Michel Claverie, Michael F. Ochs
2003 — conf
Annotation of bacterial genomes using improved phylogenomic profiles.
ISMB (Supplement of Bioinformatics)
François Enault, Karsten Suhre, Chantal Abergel, Olivier Poirot, Jean-Michel Claverie
2003 J jnl
Phydbac (phylogenomic display of bacterial genes): an interactive resource for the annotation of bacterial genomes.
Nucleic Acids Res.
François Enault, Karsten Suhre, Olivier Poirot, Chantal Abergel, Jean-Michel Claverie