Karl G. Baum

13 papers B 3Journal 4Unranked 5
YearRankTypeTitle / Venue / Authors
2019 J jnl
Comput. methods Biomech. Biomed. Eng. Imaging Vis.
Yehuda K. Ben-Zikri, Ziv R. Yaniv, Karl G. Baum, Cristian A. Linte
2012 ch.
Handbook of Visual Display Technology
Karl G. Baum
2011 conf
ISBI
José G. Tamez-Peña, Patricia C. González, Joshua Farber, Karl G. Baum, Eduard Schreyer, Saara M. S. Totterman
2011 J jnl
J. Digit. Imaging
Karl G. Baum, Evan Schmidt, Kimberly Rafferty, Andrzej Król, María Helguera
2011 J jnl
Int. J. Biomed. Imaging
Karl G. Baum, Gary Menezes, María Helguera
2010 J jnl
Comput. Biol. Medicine
Mehmet Z. Unlu, Andrzej Król, Alphonso Magri, James A. Mandel, Wei Lee, Karl G. Baum, Edward Lipson, Ioana Coman, David H. Feiglin
2008 conf
AIPR
Derek J. Walvoord, Karl G. Baum, María Helguera, Andrzej Król, Roger L. Easton Jr.
2006 conf
CIC
Karl G. Baum, María Helguera, Andrzej Król
2006 conf
ISBI
Andrzej Król, Mehmet Z. Unlu, Alphonso Magri, Edward Lipson, Ioana Coman, James A. Mandel, Karl G. Baum, David H. Feiglin
2006 B conf
ICIP
Karl G. Baum, María Helguera, Joseph P. Hornak, John P. Kerekes, Ethan D. Montag, Mehmet Z. Unlu, David H. Feiglin, Andrzej Król
2005 B conf
Image Processing
Mehmet Z. Unlu, Andrzej Król, Ioana L. Coman, James A. Mandel, Karl G. Baum, Wei Lee, Edward D. Lipson, David H. Feiglin
2004 B conf
Image Processing
Ioana L. Coman, Andrzej Król, James A. Mandel, Karl G. Baum, Min Luo, Edward D. Lipson, David H. Feiglin
2004 conf
ISBI
Ioana Coman, Andrzej Król, David H. Feiglin, Wei Li, Edward Lipson, James A. Mandel, Karl G. Baum, Mehmet Z. Unlu
s3-storage/s3_test.py
← Index s3-storage/s3_test.py python
#!/usr/bin/env python3
"""
Simple script to test S3 connectivity and download.
Usage: python s3_test.py
"""

import os
import time
import tempfile
from minio import Minio
from minio.error import S3Error
from dotenv import load_dotenv

# Load environment variables
load_dotenv()

def get_minio_client():
    """Create and return a Minio client using credentials from .env file"""
    endpoint = os.getenv("S3_ENDPOINT")
    access_key = os.getenv("S3_ACCESS_KEY")
    secret_key = os.getenv("S3_SECRET_KEY")
    secure = True 
    
    print(f"Connecting to S3 endpoint: {endpoint} (secure={secure})")
    
    return Minio(
        endpoint=endpoint,
        access_key=access_key,
        secret_key=secret_key,
        secure=secure
    )

def test_connection():
    """Test basic connectivity to S3"""
    try:
        client = get_minio_client()
        
        # Try to list buckets as a basic connectivity test
        buckets = client.list_buckets()
        print(f"Successfully connected to S3. Found {len(buckets)} buckets:")
        for bucket in buckets:
            print(f"  - {bucket.name}")
        
        return client
    except Exception as e:
        print(f"Failed to connect to S3: {e}")
        return None

def test_bucket_access(client, bucket_name):
    """Test access to a specific bucket"""
    try:
        exists = client.bucket_exists(bucket_name)
        if exists:
            print(f"Bucket '{bucket_name}' exists and is accessible")
            
            # List a few objects to verify access
            count = 0
            objects = []
            for obj in client.list_objects(bucket_name, recursive=True):
                print(f"  - {obj.object_name} ({obj.size} bytes)")
                objects.append(obj)
                count += 1
                if count >= 5:
                    break
            
            print(f"Found at least {len(objects)} objects in bucket")
            return objects
        else:
            print(f"Bucket '{bucket_name}' does not exist or is not accessible")
            return []
    except Exception as e:
        print(f"Error accessing bucket '{bucket_name}': {e}")
        return []

def test_download(client, bucket_name, object_name):
    """Test downloading a specific object"""
    try:
        print(f"Attempting to download: {object_name}")
        start_time = time.time()
        
        # Create a temporary file to store the downloaded object
        with tempfile.NamedTemporaryFile(delete=False) as temp_file:
            temp_path = temp_file.name
        
        # Download the object
        client.fget_object(bucket_name, object_name, temp_path)
        
        # Check if the file was downloaded successfully
        file_size = os.path.getsize(temp_path)
        elapsed_time = time.time() - start_time
        
        print(f"Download successful: {file_size} bytes in {elapsed_time:.2f} seconds")
        print(f"Average download speed: {file_size/elapsed_time/1024:.2f} KB/s")
        
        # Clean up
        os.unlink(temp_path)
        return True
    except S3Error as e:
        print(f"S3 Error during download: {e}")
        return False
    except Exception as e:
        print(f"Error downloading object: {e}")
        return False

def main():
    """Main function to run all tests"""
    print("=== S3 Connectivity Test ===")
    
    # Test basic connectivity
    client = test_connection()
    if not client:
        return
    
    # Get bucket name from environment variable
    bucket_name = "redb"
    print(f"\n=== Testing Access to Bucket: {bucket_name} ===")
    objects = test_bucket_access(client, bucket_name)
    
    if objects:
        # Test downloading the first object
        first_object = objects[0].object_name
        print(f"\n=== Testing Download of Object: {first_object} ===")
        test_download(client, bucket_name, first_object)
        
        # If the first one worked, let's try a specific file from the error log
        print(f"\n=== Testing Download of Specific Object ===")
        specific_object = "00/06/00062073114defac39cb7ab9cb99a0b77c535a09a241c60d47ddd0b6431629f1.zip"
        test_download(client, bucket_name, specific_object)

if __name__ == "__main__":
    main()