Karin Verspoor

264 papers A* 4A 5B 4C 2Misc 28Journal 122Unranked 90

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Framework for Transparent Reporting of Data Quality Analysis Across the Clinical Electronic Health Record Data Lifecycle. CoRR Melinda Wassell, Kerryn Butler-Henderson, Karin Verspoor
2026	A*	`conf`	Imprint of the Forgotten: Stealthy Membership Inference in Unlearned Graph Neural Networks. AAAI He Zhang, Bang Wu, Xiaoning Liu, Karin Verspoor, Xun Yi
2026	J	`jnl`	The Illusion of Human AI Parity Under Uncertainty: Navigating Elusive Ground Truth via a Probabilistic Paradigm. CoRR Aparna Elangovan, Lei Xu, Mahsa Elyasi, Ismail Akdulum, Mehmet Aksakal, Enes Gurun, Brian Hur, Saab Mansour, Ravid Shwartz Ziv, Karin Verspoor, Dan Roth
2026	J	`jnl`	The state of standardized musculoskeletal terminology for healthcare reuse:A scoping review. Int. J. Medical Informatics Melinda Wassell, Kerryn Butler-Henderson, Peter McCann, Henry Pollard, Salma Arabi, Wei Wang, Karin Verspoor
2025	—	`conf`	Automated Detection of Invasive Fungal Infections in Clinical Reports Using Medical Language Models. MedInfo Wei Han, David Martínez, Vlada Rozova, Lawrence Cavedon, Anna Khanina, Leon J. Worth, Monica A. Slavin, Karin A. Thursky, Karin Verspoor
2025	J	`jnl`	Comparing Text-Based Clinical Risk Prediction in Critical Care: A Note-Specific Hierarchical Network and Large Language Models. IEEE J. Biomed. Health Informatics Jinghui Liu, Anthony N. Nguyen, Daniel Capurro, Karin Verspoor
2025	J	`jnl`	Conversational Agents: A Framework for Evaluation (CAFE) (Dagstuhl Perspectives Workshop 24352). Dagstuhl Manifestos Christine Bauer, Li Chen, Nicola Ferro, Norbert Fuhr, Avishek Anand, Timo Breuer, Guglielmo Faggioli, Ophir Frieder, Hideo Joho, Jussi Karlgren, Johannes Kiesel, Bart P. Knijnenburg, Aldo Lipani, Lien Michiels, Andrea Papenmeier, Maria Soledad Pera, Mark Sanderson, Scott Sanner, Benno Stein, Johanne R. Trippas, Karin Verspoor, Martijn C. Willemsen
2025	J	`jnl`	Enriched knowledge representation in biological fields: a case study of literature-based discovery in Alzheimer's disease. J. Biomed. Semant. Yiyuan Pu, Daniel Beck, Karin Verspoor
2025	—	`conf`	Evaluating Numeracy of Language Models as a Natural Language Inference Task. NAACL (Findings) Rahmad Mahendra, Damiano Spina, Lawrence Cavedon, Karin Verspoor
2025	—	`conf`	Knowledge Tree Driven Contextualized Instruction Tuning of Foundation Models for Epilepsy Drug Recommendation. MICCAI (6) Duy Khoa Pham, Deval Mehta, Yiwen Jiang, Daniel Thom, Richard Shek-kwan Chang, Mohammad Nazem-Zadeh, Emma Foster, Timothy Fazio, Sarah Holper, Karin Verspoor, Jiahe Liu, Duong Nhu, Sarah Barnard, Terence J. O'Brien, Zhibin Chen, Jacqueline French, Patrick Kwan, Zongyuan Ge
2025	J	`jnl`	Learning Robust Negation Text Representations. CoRR Thinh Hung Truong, Karin Verspoor, Trevor Cohn, Timothy Baldwin
2025	J	`jnl`	Manifesto from Dagstuhl Perspectives Workshop 24352 - Conversational Agents: A Framework for Evaluation (CAFE). CoRR Christine Bauer, Li Chen, Nicola Ferro, Norbert Fuhr, Avishek Anand, Timo Breuer, Guglielmo Faggioli, Ophir Frieder, Hideo Joho, Jussi Karlgren, Johannes Kiesel, Bart P. Knijnenburg, Aldo Lipani, Lien Michiels, Andrea Papenmeier, Maria Soledad Pera, Mark Sanderson, Scott Sanner, Benno Stein, Johanne R. Trippas, Karin Verspoor, Martijn C. Willemsen
2025	J	`jnl`	Toward responsible artificial intelligence in medicine: Reflections from the Australian epilepsy project. Artif. Intell. Medicine Mangor Pedersen, Heath R. Pardoe, Anton de Weger, Donna Hutchison, David F. Abbott, Karin Verspoor, Graeme D. Jackson
2024	—	`conf`	Do Numbers Matter? Types and Prevalence of Numbers in Clinical Texts. BioNLP@ACL Rahmad Mahendra, Damiano Spina, Lawrence Cavedon, Karin Verspoor
2024	J	`jnl`	EMBRE: Entity-aware Masking for Biomedical Relation Extraction. CoRR Mingjie Li, Karin Verspoor
2024	—	`conf`	Effectiveness of Cross-linguistic Extraction of Genetic Information using Generative Large Language Models. IberLEF@SEPLN Milindi Kodikara, Karin Verspoor
2024	J	`jnl`	Focused Contrastive Loss for Classification With Pre-Trained Language Models. IEEE Trans. Knowl. Data Eng. Jiayuan He, Yuan Li, Zenan Zhai, Biaoyan Fang, Camilo Thorne, Christian Druckenbrodt, Saber A. Akhondi, Karin Verspoor
2024	J	`jnl`	Graph Transformers: A Survey. CoRR Ahsan Shehzad, Feng Xia, Shagufta Abid, Ciyuan Peng, Shuo Yu, Dongyu Zhang, Karin Verspoor
2024	J	`jnl`	Integration of background knowledge for automatic detection of inconsistencies in gene ontology annotation. Bioinform. Jiyu Chen, Benjamin Goudey, Nicholas Geard, Karin Verspoor
2024	—	`conf`	Intervention extraction in preclinical animal studies of Alzheimer's Disease: Enhancing regex performance with language model-based filtering. BioNLP@ACL Yiyuan Pu, Kaitlyn Hair, Daniel Beck, Mike Conway, Malcolm MacLeod, Karin Verspoor
2024	Misc	`conf`	Lesser the Shots, Higher the Hallucinations: Exploration of Genetic Information Extraction using Generative Large Language Models. ALTA Milindi Kodikara, Karin Verspoor
2024	—	`conf`	Principles from Clinical Research for NLP Model Generalization. NAACL-HLT Aparna Elangovan, Jiayuan He, Yuan Li, Karin Verspoor
2024	—	`conf`	Revisiting subword tokenization: A case study on affixal negation in large language models. NAACL-HLT Thinh Truong, Yulia Otmakhova, Karin Verspoor, Trevor Cohn, Timothy Baldwin
2024	J	`jnl`	Revisiting subword tokenization: A case study on affixal negation in large language models. CoRR Thinh Hung Truong, Yulia Otmakhova, Karin Verspoor, Trevor Cohn, Timothy Baldwin
2024	J	`jnl`	The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. Database J. Biol. Databases Curation Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Melo Almeida, Richard A. A. Jonker, Sofia I. R. Conceição, Diana F. Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu
2024	—	`conf`	Towards Explainable Deep Learning for Non-melanoma Skin Cancer Diagnosis. AI (1) Anh Le Van, Karin Verspoor, Thomas B. Kirk, Andy Song
2023	J	`jnl`	An evaluation of existing text de-identification tools for use with patient progress notes from Australian general practice. Int. J. Medical Informatics Carol El-Hayek, Siamak Barzegar, Noel Faux, Kim Doyle, Priyanka Pillai, Simon J. Mutch, Alaina Vaisey, Roger Ward, Lena Sanci, Adam G. Dunn, Margaret Hellard, Jane S. Hocking, Karin Verspoor, Douglas Iain Ross Boyle
2023	J	`jnl`	Attention-based multimodal fusion with contrast for robust clinical prediction in the face of missing modalities. J. Biomed. Informatics Jinghui Liu, Daniel Capurro, Anthony N. Nguyen, Karin Verspoor
2023	Misc	`conf`	CRF-based recognition of invasive fungal infection concepts in CHIFIR clinical reports. ALTA Yang Meng, Vlada Rozova, Karin Verspoor
2023	J	`jnl`	Classifying literature mentions of biological pathogens as experimentally studied using natural language processing. J. Biomed. Semant. Antonio José Jimeno-Yepes, Karin Verspoor
2023	J	`jnl`	Collective Human Opinions in Semantic Textual Similarity. CoRR Yuxia Wang, Shimin Tao, Ning Xie, Hao Yang, Timothy Baldwin, Karin Verspoor
2023	J	`jnl`	Collective Human Opinions in Semantic Textual Similarity. Trans. Assoc. Comput. Linguistics Yuxia Wang, Shimin Tao, Ning Xie, Hao Yang, Timothy Baldwin, Karin Verspoor
2023	—	`conf`	Deep Outdated Fact Detection in Knowledge Graphs. ICDM (Workshops) Huiling Tu, Shuo Yu, Vidya Saikrishna, Feng Xia, Karin Verspoor
2023	—	`conf`	Designing a Digital Health Solution: A Platform for Automated Surveillance of Fungal Infection. MedInfo Anna Khanina, Vlada Rozova, Sri Elkins, Karin Verspoor, Karin A. Thursky
2023	J	`jnl`	Detecting evidence of invasive fungal infections in cytology and histopathology reports enriched with concept-level annotations. J. Biomed. Informatics Vlada Rozova, Anna Khanina, Jasmine C. Teng, Joanne S. K. Teh, Leon J. Worth, Monica A. Slavin, Karin A. Thursky, Karin Verspoor
2023	—	`conf`	Effects of Human Adversarial and Affable Samples on BERT Generalizability. EMNLP (Findings) Aparna Elangovan, Estrid He, Yuan Li, Karin Verspoor
2023	J	`jnl`	Effects of Human Adversarial and Affable Samples on BERT Generalizability. CoRR Aparna Elangovan, Jiayuan He, Yuan Li, Karin Verspoor
2023	J	`jnl`	Graph embedding-based link prediction for literature-based discovery in Alzheimer's Disease. J. Biomed. Informatics Yiyuan Pu, Daniel Beck, Karin Verspoor
2023	—	`conf`	ITTC at SemEval 2023-Task 7: Document Retrieval and Sentence Similarity for Evidence Retrieval in Clinical Trial Data. SemEval@ACL Rahmad Mahendra, Damiano Spina, Karin Verspoor
2023	J	`jnl`	Improving Text-based Early Prediction by Distillation from Privileged Time-Series Text. CoRR Jinghui Liu, Daniel Capurro, Anthony N. Nguyen, Karin Verspoor
2023	J	`jnl`	Language models are not naysayers: An analysis of language models on negation benchmarks. CoRR Thinh Hung Truong, Timothy Baldwin, Karin Verspoor, Trevor Cohn
2023	—	`conf`	Language models are not naysayers: an analysis of language models on negation benchmarks. *SEM@ACL Thinh Hung Truong, Timothy Baldwin, Karin Verspoor, Trevor Cohn
2023	J	`jnl`	Principles from Clinical Research for NLP Model Generalization. CoRR Aparna Elangovan, Jiayuan He, Yuan Li, Karin Verspoor
2023	—	`conf`	Promoting Fairness in Classification of Quality of Medical Evidence. BioNLP@ACL Simon Suster, Timothy Baldwin, Karin Verspoor
2023	J	`jnl`	The Secondary Use of Electronic Health Records for Data Mining: Data Characteristics and Challenges. ACM Comput. Surv. Tabinda Sarwar, Sattar Seifollahi, Jeffrey Chan, Xiuzhen Zhang, Vural Aksakalli, Irene Lena Hudson, Karin Verspoor, Lawrence Cavedon
2023	—	`conf`	Uncovering Variations in Clinical Notes for NLP Modeling. MedInfo Jinghui Liu, Daniel Capurro, Anthony N. Nguyen, Karin Verspoor
2023	—	`conf`	Understanding Clinician EHR Data Quality for Reuse in Predictive Modelling. MedInfo Melinda Wassell, James L. Murray, Chaithra Kumar, Karin Verspoor, Kerryn Butler-Henderson
2022	J	`jnl`	"Note Bloat" impacts deep learning-based NLP models for clinical prediction tasks. J. Biomed. Informatics Jinghui Liu, Daniel Capurro, Anthony N. Nguyen, Karin Verspoor
2022	A*	`conf`	Cross-modal Clinical Graph Transformer for Ophthalmic Report Generation. CVPR Mingjie Li, Wenjia Cai, Karin Verspoor, Shirui Pan, Xiaodan Liang, Xiaojun Chang
2022	J	`jnl`	Cross-modal Clinical Graph Transformer for Ophthalmic Report Generation. CoRR Mingjie Li, Wenjia Cai, Karin Verspoor, Shirui Pan, Xiaodan Liang, Xiaojun Chang
2022	J	`jnl`	Detection of self-harm and suicidal ideation in emergency department triage notes. J. Am. Medical Informatics Assoc. Vlada Rozova, Katrina Witt, Jo Robinson, Yan Li, Karin Verspoor
2022	—	`conf`	Distinguishing between focus and background entities in biomedical corpora using discourse structure and transformers. LOUHI@EMNLP Antonio Jimeno-Yepes, Karin Verspoor
2022	J	`jnl`	Exploring automatic inconsistency detection for literature-based gene ontology annotation. Bioinform. Jiyu Chen, Benjamin Goudey, Justin Zobel, Nicholas Geard, Karin Verspoor
2022	—	`conf`	Extended Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF (Working Notes) Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Kojiro Machi, Masaharu Yoshioka, Youngrok Jang, Hosung Song, Junho Lee, Gyeonghun Kim, Yireun Kim, Stanley Jungkyu Choi, Honglak Lee, Kyunghoon Bae, Darshini Mahendran, Christina Tang, Bridget T. McInnes, Timothy Baldwin, Karin Verspoor
2022	J	`jnl`	ITTC @ TREC 2021 Clinical Trials Track. CoRR Thinh Hung Truong, Yulia Otmakhova, Rahmad Mahendra, Timothy Baldwin, Jey Han Lau, Trevor Cohn, Lawrence Cavedon, Damiano Spina, Karin Verspoor
2022	Misc	`conf`	Improving Text-based Early Prediction by Distillation from Privileged Time-Series Text. ALTA Jinghui Liu, Daniel Capurro, Anthony N. Nguyen, Karin Verspoor
2022	—	`conf`	Improving negation detection with negation-focused pre-training. NAACL-HLT Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor
2022	J	`jnl`	Improving negation detection with negation-focused pre-training. CoRR Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor
2022	—	`conf`	LED down the rabbit hole: exploring the potential of global attention for biomedical multi-document summarisation. SDP@COLING Yulia Otmakhova, Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor, Jey Han Lau
2022	J	`jnl`	LED down the rabbit hole: exploring the potential of global attention for biomedical multi-document summarisation. CoRR Yulia Otmakhova, Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor, Jey Han Lau
2022	J	`jnl`	Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. BMC Bioinform. Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor
2022	J	`jnl`	Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. CoRR Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor
2022	—	`conf`	M3: Multi-level dataset for Multi-document summarisation of Medical studies. EMNLP (Findings) Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Antonio Jimeno-Yepes, Jey Han Lau
2022	J	`jnl`	MPVNN: Mutated Pathway Visible Neural Network Architecture for Interpretable Prediction of Cancer-specific Survival Risk. CoRR Gourab Ghosh Roy, Nicholas Geard, Karin Verspoor, Shan He
2022	J	`jnl`	MPVNN: Mutated Pathway Visible Neural Network architecture for interpretable prediction of cancer-specific survival risk. Bioinform. Gourab Ghosh Roy, Nicholas Geard, Karin Verspoor, Shan He
2022	B	`conf`	Noisy Label Regularisation for Textual Regression. COLING Yuxia Wang, Timothy Baldwin, Karin Verspoor
2022	—	`conf`	Not another Negation Benchmark: The NaN-NLI Test Suite for Sub-clausal Negation. AACL/IJCNLP (1) Thinh Hung Truong, Yulia Otmakhova, Timothy Baldwin, Trevor Cohn, Jey Han Lau, Karin Verspoor
2022	J	`jnl`	Not another Negation Benchmark: The NaN-NLI Test Suite for Sub-clausal Negation. CoRR Thinh Hung Truong, Yulia Otmakhova, Timothy Baldwin, Trevor Cohn, Jey Han Lau, Karin Verspoor
2022	—	`conf`	Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor
2022	J	`jnl`	Propagation, detection and correction of errors using the sequence database network. Briefings Bioinform. Benjamin Goudey, Nicholas Geard, Karin Verspoor, Justin Zobel
2022	—	`conf`	READ-BioMed@SocialDisNER: Adaptation of an Annotation System to Spanish Tweets. SMM4H@COLING Antonio Jimeno-Yepes, Karin Verspoor
2022	J	`jnl`	Tasks as needs: reframing the paradigm of clinical natural language processing research for real-world decision support. J. Am. Medical Informatics Assoc. Asher Lederman, Reeva Lederman, Karin Verspoor
2022	—	`conf`	The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. ECIR (2) Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zenan Zhai, Zubair Afzal, Trevor Cohn, Timothy Baldwin, Karin Verspoor
2022	—	`conf`	The READ-BioMed Team in LivingNER Task 1 (2022): Adaptation of an English Annotation System to Spanish. IberLEF@SEPLN Antonio Jimeno-Yepes, Karin Verspoor
2022	—	`conf`	The patient is more dead than alive: exploring the current state of the multi-document summarisation of the biomedical literature. ACL (1) Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Jey Han Lau
2022	J	`jnl`	Uncertainty Estimation and Reduction of Pre-trained Models for Text Regression. Trans. Assoc. Comput. Linguistics Yuxia Wang, Daniel Beck, Karin Verspoor, Timothy Baldwin
2022	—	`conf`	What does it take to bake a cake? The RecipeRef corpus and anaphora resolution in procedural text. ACL (Findings) Biaoyan Fang, Timothy Baldwin, Karin Verspoor
2022	—	`conf`	Why Bother Enabling Biomedical Literature Analysis with Semantics? WWW (Companion Volume) Karin Verspoor
2021	Misc	`conf`	Advanced Methods for Big Data Analytics in Women's Health. PSB Mary Regina Boland, Karin Verspoor, Maricel G. Kann, Su Golder, Lisa Levine, Karen O'Conner, Natalia Villanueva-Rosales, Graciela Gonzalez-Hernandez
2021	J	`jnl`	Automatic consistency assurance for literature-based gene ontology annotation. BMC Bioinform. Jiyu Chen, Nicholas Geard, Justin Zobel, Karin Verspoor
2021	—	`conf`	Brief Description of COVID-SEE: The Scientific Evidence Explorer for COVID-19 Related Research. ECIR (2) Karin Verspoor, Simon Suster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno-Yepes, David Martínez
2021	J	`jnl`	ChEMU 2020: Natural Language Processing Methods Are Effective for Information Extraction From Chemical Patents. Frontiers Res. Metrics Anal. Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
2021	—	`conf`	ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. ECIR (2) Jiayuan He, Biaoyan Fang, Hiyori Yoshikawa, Yuan Li, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
2021	A	`conf`	ChEMU-Ref: A Corpus for Modeling Anaphora Resolution in the Chemical Domain. EACL Biaoyan Fang, Christian Druckenbrodt, Saber A. Akhondi, Jiayuan He, Timothy Baldwin, Karin Verspoor
2021	J	`jnl`	ChemTables: a dataset for semantic classification on tables in chemical patents. J. Cheminformatics Zenan Zhai, Christian Druckenbrodt, Camilo Thorne, Saber A. Akhondi, Dat Quoc Nguyen, Trevor Cohn, Karin Verspoor
2021	J	`jnl`	Early prediction of diagnostic-related groups and estimation of hospital cost by processing clinical notes. npj Digit. Medicine Jinghui Liu, Daniel Capurro, Anthony N. Nguyen, Karin Verspoor
2021	J	`jnl`	Evaluation of consensus strategies for haplotype phasing. Briefings Bioinform. Ziad Al Bkhetan, Gursharan Chana, Kotagiri Ramamohanarao, Karin Verspoor, Benjamin Goudey
2021	—	`conf`	Extended Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF (Working Notes) Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor
2021	—	`conf`	FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark. NeurIPS Datasets and Benchmarks Mingjie Li, Wenjia Cai, Rui Liu, Yuetian Weng, Xiaoyun Zhao, Cong Wang, Xin Chen, Zhong Liu, Caineng Pan, Mengke Li, Yingfeng Zheng, Yizhi Liu, Flora D. Salim, Karin Verspoor, Xiaodan Liang, Xiaojun Chang
2021	—	`conf`	ITTC @ TREC 2021 Clinical Trials Track. TREC Hung-Thinh Truong, Yulia Otmakhova, Timothy Baldwin, Jey Han Lau, Trevor Cohn, Karin Verspoor, Rahmad Mahendra, Lawrence Cavedon, Damiano Spina
2021	—	`conf`	Impact of detecting clinical trial elements in exploration of COVID-19 literature. ICHI Simon Suster, Karin Verspoor, Timothy Baldwin, Jey Han Lau, Antonio Jimeno-Yepes, David Martinez Iraola, Yulia Otmakhova
2021	J	`jnl`	Impact of detecting clinical trial elements in exploration of COVID-19 literature. CoRR Simon Suster, Karin Verspoor, Timothy Baldwin, Jey Han Lau, Antonio Jimeno-Yepes, David Martínez, Yulia Otmakhova
2021	J	`jnl`	Machine learning with a reduced dimensionality representation of comprehensive Pentacam tomography parameters to identify subclinical keratoconus. Comput. Biol. Medicine Ke Cao, Karin Verspoor, Elsie Chan, Mark Daniell, Srujana Sahebjada, Paul N. Baird
2021	A	`conf`	Memorization vs. Generalization : Quantifying Data Leakage in NLP Performance Evaluation. EACL Aparna Elangovan, Jiayuan He, Karin Verspoor
2021	J	`jnl`	Memorization vs. Generalization: Quantifying Data Leakage in NLP Performance Evaluation. CoRR Aparna Elangovan, Jiayuan He, Karin Verspoor
2021	—	`conf`	Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor
2021	J	`jnl`	PoLoBag: Polynomial Lasso Bagging for signed gene regulatory network inference from expression data. Bioinform. Gourab Ghosh Roy, Nicholas Geard, Karin Verspoor, Shan He
2021	Misc	`conf`	Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. AMIA Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman
2021	Misc	`conf`	Using Discourse Structure to Differentiate Focus Entities from Background Entities in Scientific Literature. ALTA Antonio Jimeno-Yepes, Ameer Albahem, Karin Verspoor
2020	—	`conf`	An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi R. K. Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
2020	J	`jnl`	Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts. CoRR Aparna Elangovan, Melissa J. Davis, Karin Verspoor
2020	J	`jnl`	COVID-SEE: Scientific Evidence Explorer for COVID-19 Related Research. CoRR Karin Verspoor, Simon Suster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno-Yepes, David Martínez
2020	—	`conf`	ChEMU: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. ECIR (2) Dat Quoc Nguyen, Zenan Zhai, Hiyori Yoshikawa, Biaoyan Fang, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Saber A. Akhondi, Trevor Cohn, Timothy Baldwin, Karin Verspoor
2020	—	`conf`	Domain Adaptation and Instance Selection for Disease Syndrome Classification over Veterinary Clinical Notes. BioNLP Brian Hur, Timothy Baldwin, Karin Verspoor, Laura Hardefeldt, James Gilkerson
2020	—	`conf`	Evaluating the Utility of Model Configurations and Data Augmentation on Clinical Semantic Textual Similarity. BioNLP Yuxia Wang, Fei Liu, Karin Verspoor, Timothy Baldwin
2020	—	`conf`	Improved Topic Representations of Medical Documents to Assist COVID-19 Literature Exploration. NLP4COVID@EMNLP Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Simon Suster
2020	—	`conf`	Learning from Unlabelled Data for Clinical Semantic Textual Similarity. ClinicalNLP@EMNLP Yuxia Wang, Karin Verspoor, Timothy Baldwin
2020	—	`conf`	Overview of ChEMU 2020: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. CLEF Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
2020	—	`ed.`	Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020 NLP4COVID@EMNLP Karin Verspoor, Kevin Bretonnel Cohen, Michael Conway, Berry de Bruijn, Mark Dredze, Rada Mihalcea, Byron C. Wallace
2020	J	`jnl`	Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. Genom. Proteom. Bioinform. Qingyu Chen, Ramona Britto, Ivan Erill, Constance J. Jeffery, Arthur Liberzon, Michele Magrane, Jun-ichi Onami, Marc Robinson-Rechavi, Jana Sponarova, Justin Zobel, Karin Verspoor
2020	J	`jnl`	Testing Contextualized Word Embeddings to Improve NER in Spanish Clinical Case Narratives. IEEE Access Liliya Akhtyamova, Paloma Martínez, Karin Verspoor, John Cardiff
2020	B	`conf`	WikiUMLS: Aligning UMLS to Wikipedia via Cross-lingual Neural Ranking. COLING Afshin Rahimi, Timothy Baldwin, Karin Verspoor
2020	J	`jnl`	WikiUMLS: Aligning UMLS to Wikipedia via Cross-lingual Neural Ranking. CoRR Afshin Rahimi, Timothy Baldwin, Karin Verspoor
2019	—	`conf`	A Bag-of-concepts Model Improves Relation Extraction in a Narrow Knowledge Domain with Limited Data. NAACL-HLT (Student Research Workshop) Jiyu Chen, Karin Verspoor, Zenan Zhai
2019	J	`jnl`	A bag-of-concepts model improves relation extraction in a narrow knowledge domain with limited data. CoRR Jiyu Chen, Karin Verspoor, Zenan Zhai
2019	J	`jnl`	Automated assessment of biological database assertions using the scientific literature. BMC Bioinform. Mohamed Reda Bouadjenek, Justin Zobel, Karin Verspoor
2019	J	`jnl`	BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
2019	—	`conf`	Characterizing the Scope of Exposome Research Through Topic Modeling and Ontology Analysis. MedInfo Guillermo López-Campos, Philip Kiossoglou, Ann Borda, Christopher Hawthorne, Kathleen Gray, Karin Verspoor
2019	Misc	`conf`	Detecting Chemical Reactions in Patents. ALTA Hiyori Yoshikawa, Dat Quoc Nguyen, Zenan Zhai, Christian Druckenbrodt, Camilo Thorne, Saber A. Akhondi, Timothy Baldwin, Karin Verspoor
2019	—	`conf`	End-to-End Neural Relation Extraction Using Deep Biaffine Attention. ECIR (1) Dat Quoc Nguyen, Karin Verspoor
2019	J	`jnl`	Exploring effective approaches for haplotype block phasing. BMC Bioinform. Ziad Al Bkhetan, Justin Zobel, Adam Kowalczyk, Karin Verspoor, Benjamin Goudey
2019	—	`conf`	Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies. WMT (3) Rachel Bawden, Kevin Bretonnel Cohen, Cristian Grozea, Antonio Jimeno-Yepes, Madeleine Kittner, Martin Krallinger, Nancy Mah, Aurélie Névéol, Mariana L. Neves, Felipe Soares, Amy Siu, Karin Verspoor, Maika Vicente Navarro
2019	J	`jnl`	From POS tagging to dependency parsing for biomedical event extraction. BMC Bioinform. Dat Quoc Nguyen, Karin Verspoor
2019	—	`conf`	Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. BioNLP@ACL Zenan Zhai, Dat Quoc Nguyen, Saber A. Akhondi, Camilo Thorne, Christian Druckenbrodt, Trevor Cohn, Michelle Gregory, Karin Verspoor
2019	J	`jnl`	Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. CoRR Zenan Zhai, Dat Quoc Nguyen, Saber A. Akhondi, Camilo Thorne, Christian Druckenbrodt, Trevor Cohn, Michelle Gregory, Karin Verspoor
2019	J	`jnl`	Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database J. Biol. Databases Curation Rezarta Islamaj Dogan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C. Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C. Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altinel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang, Hong-Jie Dai, Tung Tran, Ramakanth Kavuluru, Ling Luo, Albert Steppi, Jinfeng Zhang, Jinchan Qu, Zhiyong Lu
2019	—	`ed.`	Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 1: Research Papers WMT (1) Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André F. T. Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor
2019	—	`ed.`	Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 2: Shared Task Papers, Day 1 WMT (2) Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André F. T. Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor
2019	—	`ed.`	Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 3: Shared Task Papers, Day 2 WMT (3) Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André F. T. Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor
2019	J	`jnl`	Quantifying semantic similarity of clinical evidence in the biomedical literature to facilitate related evidence synthesis. J. Biomed. Informatics Hamed Hassanzadeh, Anthony N. Nguyen, Karin Verspoor
2019	J	`jnl`	Search Effectiveness in Nonredundant Sequence Databases: Assessments and Solutions. J. Comput. Biol. Qingyu Chen, Xiuzhen Zhang, Yu Wan, Justin Zobel, Karin Verspoor
2019	J	`jnl`	SemEval-2017 Task 3: Community Question Answering. CoRR Preslav Nakov, Doris Hoogeveen, Lluís Màrquez, Alessandro Moschitti, Hamdy Mubarak, Timothy Baldwin, Karin Verspoor
2018	J	`jnl`	A two-tiered unsupervised clustering approach for drug repositioning through heterogeneous data integration. BMC Bioinform. Pathima Nusrath Hameed, Karin Verspoor, Snezana Kusljic, Saman K. Halgamuge
2018	—	`conf`	An Improved Neural Network Model for Joint POS Tagging and Dependency Parsing. CoNLL Shared Task (2) Dat Quoc Nguyen, Karin Verspoor
2018	J	`jnl`	An improved neural network model for joint POS tagging and dependency parsing. CoRR Dat Quoc Nguyen, Karin Verspoor
2018	J	`jnl`	BioCreative VI Precision Medicine Track system performance is constrained by entity recognition and variations in corpus characteristics. Database J. Biol. Databases Curation Qingyu Chen, Nagesh C. Panyam, Aparna Elangovan, Karin Verspoor
2018	J	`jnl`	CommViz: Visualization of semantic patterns in large social communication networks. Inf. Vis. Karin Verspoor, Bahadorreza Ofoghi, Marlene Robles Granda
2018	J	`jnl`	Comparative Analysis of Sequence Clustering Methods for Deduplication of Biological Databases. ACM J. Data Inf. Qual. Qingyu Chen, Yu Wan, Xiuzhen Zhang, Yang Lei, Justin Zobel, Karin Verspoor
2018	—	`conf`	Comparing CNN and LSTM character-level embeddings in BiLSTM-CRF models for chemical and disease named entity recognition. Louhi@EMNLP Zenan Zhai, Dat Quoc Nguyen, Karin Verspoor
2018	J	`jnl`	Comparing CNN and LSTM character-level embeddings in BiLSTM-CRF models for chemical and disease named entity recognition. CoRR Zenan Zhai, Dat Quoc Nguyen, Karin Verspoor
2018	—	`conf`	Convolutional neural networks for chemical-disease relation extraction are improved with character-based word embeddings. BioNLP Dat Quoc Nguyen, Karin Verspoor
2018	J	`jnl`	Convolutional neural networks for chemical-disease relation extraction are improved with character-based word embeddings. CoRR Dat Quoc Nguyen, Karin Verspoor
2018	Misc	`conf`	DrKnow: A Diagnostic Learning Tool with Feedback from Automated Clinical Decision Support. AMIA Piyapong Khumrin, Anna Ryan, Terry S. Judd, Karin Verspoor
2018	J	`jnl`	End-to-end neural relation extraction using deep biaffine attention. CoRR Dat Quoc Nguyen, Karin Verspoor
2018	J	`jnl`	Exploiting graph kernels for high performance biomedical relation extraction. J. Biomed. Semant. Nagesh Panyam Chandrasekarasastry, Karin Verspoor, Trevor Cohn, Kotagiri Ramamohanarao
2018	—	`conf`	Findings of the WMT 2018 Biomedical Translation Shared Task: Evaluation on Medline test sets. WMT (shared task) Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, Cristian Grozea, Amy Siu, Madeleine Kittner, Karin Verspoor
2018	J	`jnl`	From Evaluating to Forecasting Performance: How to Turn Information Retrieval, Natural Language Processing and Recommender Systems into Predictive Sciences (Dagstuhl Perspectives Workshop 17442). Dagstuhl Manifestos Nicola Ferro, Norbert Fuhr, Gregory Grefenstette, Joseph A. Konstan, Pablo Castells, Elizabeth M. Daly, Thierry Declerck, Michael D. Ekstrand, Werner Geyer, Julio Gonzalo, Tsvi Kuflik, Krister Lindén, Bernardo Magnini, Jian-Yun Nie, Raffaele Perego, Bracha Shapira, Ian Soboroff, Nava Tintarev, Karin Verspoor, Martijn C. Willemsen, Justin Zobel
2018	J	`jnl`	From POS tagging to dependency parsing for biomedical event extraction. CoRR Dat Quoc Nguyen, Karin Verspoor
2018	B	`conf`	Parallel Corpora for the Biomedical Domain. LREC Aurélie Névéol, Antonio Jimeno-Yepes, Mariana L. Neves, Karin Verspoor
2018	—	`conf`	Privacy-Preserving Access Control in Electronic Health Record Linkage. TrustCom/BigDataSE Yang Lu, Richard O. Sinnott, Karin Verspoor, Udaya Parampalli
2018	—	`ed.`	Proceedings of the Third Conference on Machine Translation: Research Papers, WMT 2018, Belgium, Brussels, October 31 - November 1, 2018 WMT Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Lucia Specia, Marco Turchi, Karin Verspoor
2018	—	`ed.`	Proceedings of the Third Conference on Machine Translation: Shared Task Papers, WMT 2018, Belgium, Brussels, October 31 - November 1, 2018 WMT (shared task) Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Lucia Specia, Marco Turchi, Karin Verspoor
2018	—	`conf`	Semantic-Based Policy Composition for Privacy-Demanding Data Linkage. TrustCom/BigDataSE Yang Lu, Richard O. Sinnott, Karin Verspoor
2018	J	`jnl`	The Dagstuhl Perspectives Workshop on Performance Modeling and Prediction. SIGIR Forum Nicola Ferro, Norbert Fuhr, Gregory Grefenstette, Joseph A. Konstan, Pablo Castells, Elizabeth M. Daly, Thierry Declerck, Michael D. Ekstrand, Werner Geyer, Julio Gonzalo, Tsvi Kuflik, Krister Lindén, Bernardo Magnini, Jian-Yun Nie, Raffaele Perego, Bracha Shapira, Ian Soboroff, Nava Tintarev, Karin Verspoor, Martijn C. Willemsen, Justin Zobel
2018	J	`jnl`	The randomized information coefficient: assessing dependencies in noisy data. Mach. Learn. Simone Romano, Xuan Vinh Nguyen, Karin Verspoor, James Bailey
2017	Misc	`conf`	A Semantic-Based K-Anonymity Scheme for Health Record Linkage. HIC Yang Lu, Richard O. Sinnott, Karin Verspoor
2017	J	`jnl`	Automated detection of records in biological sequence databases that are inconsistent with the literature. J. Biomed. Informatics Mohamed Reda Bouadjenek, Karin Verspoor, Justin Zobel
2017	Misc	`conf`	Automatic Negation and Speculation Detection in Veterinary Clinical Text. ALTA Katherine Cheng, Timothy Baldwin, Karin Verspoor
2017	—	`conf`	Characterising the Scope of Exposome Research: A Generalisable Approach. MedInfo Philip Kiossoglou, Ann Borda, Kathleen Gray, Fernando Martín-Sánchez, Karin Verspoor, Guillermo López-Campos
2017	J	`jnl`	Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles. BMC Bioinform. K. Bretonnel Cohen, Arrick Lanfranchi, Miji Joo-young Choi, Michael Bada, William A. Baumgartner Jr., Natalya Panteleyeva, Karin Verspoor, Martha Palmer, Lawrence E. Hunter
2017	—	`conf`	Diagnostic Machine Learning Models for Acute Abdominal Pain: Towards an e-Learning Tool for Medical Students. MedInfo Piyapong Khumrin, Anna Ryan, Terry S. Judd, Karin Verspoor
2017	J	`jnl`	Duplicates, redundancies and inconsistencies in the primary nucleotide databases: a descriptive study. Database J. Biol. Databases Curation Qingyu Chen, Justin Zobel, Karin Verspoor
2017	—	`conf`	Findings of the WMT 2017 Biomedical Translation Shared Task. WMT Antonio Jimeno-Yepes, Aurélie Névéol, Mariana L. Neves, Karin Verspoor, Ondrej Bojar, Arthur Boyer, Cristian Grozea, Barry Haddow, Madeleine Kittner, Yvonne Lichtblau, Pavel Pecina, Roland Roller, Rudolf Rosa, Amy Siu, Philippe Thomas, Saskia Trescher
2017	A	`conf`	Learning Biological Sequence Types Using the Literature. CIKM Mohamed Reda Bouadjenek, Karin Verspoor, Justin Zobel
2017	J	`jnl`	Literature consistency of bioinformatics sequence databases is effective for assessing record quality. Database J. Biol. Databases Curation Mohamed Reda Bouadjenek, Karin Verspoor, Justin Zobel
2017	J	`jnl`	Multi-field query expansion is effective for biomedical dataset retrieval. Database J. Biol. Databases Curation Mohamed Reda Bouadjenek, Karin Verspoor
2017	J	`jnl`	Positive-Unlabeled Learning for inferring drug interactions based on heterogeneous attributes. BMC Bioinform. Pathima Nusrath Hameed, Karin Verspoor, Snezana Kusljic, Saman K. Halgamuge
2017	—	`conf`	SemEval-2017 Task 3: Community Question Answering. SemEval@ACL Preslav Nakov, Doris Hoogeveen, Lluís Màrquez, Alessandro Moschitti, Hamdy Mubarak, Timothy Baldwin, Karin Verspoor
2017	—	`conf`	Sequence Clustering Methods and Completeness of Biological Database Search. BAI@IJCAI Qingyu Chen, Xiuzhen Zhang, Yu Wan, Justin Zobel, Karin Verspoor
2017	—	`conf`	Textual Emotion Classification: An Interoperability Study on Cross-Genre Data Sets. Australasian Conference on Artificial Intelligence Bahadorreza Ofoghi, Karin Verspoor
2017	Misc	`conf`	Understanding Health Professionals' Informal Learning in Online Social Networks: A Cross-Sectional Survey. HIC Xin Li, Karin Verspoor, Kathleen Gray, Stephen Barnett
2016	A	`conf`	A Framework to Adjust Dependency Measure Estimates for Chance. SDM Simone Romano, Xuan Vinh Nguyen, James Bailey, Karin Verspoor
2016	J	`jnl`	A categorical analysis of coreference resolution errors in biomedical texts. J. Biomed. Informatics Miji Choi, Justin Zobel, Karin Verspoor
2016	J	`jnl`	A physarum-inspired prize-collecting steiner tree approach to identify subnetworks for drug repositioning. BMC Syst. Biol. Yahui Sun, Pathima Nusrath Hameed, Karin Verspoor, Saman K. Halgamuge
2016	Misc	`conf`	ASM Kernel: Graph Kernel using Approximate Subgraph Matching for Relation Extraction. ALTA Nagesh Panyam Chandrasekarasastry, Karin Verspoor, Trevor Cohn, Rao Kotagiri
2016	J	`jnl`	Adjusting for Chance Clustering Comparison Measures. J. Mach. Learn. Res. Simone Romano, Xuan Vinh Nguyen, James Bailey, Karin Verspoor
2016	Misc	`conf`	Analysing Health Professionals' Learning Interactions in an Online Social Network: A Longitudinal Study. HIC Xin Li, Karin Verspoor, Kathleen Gray, Stephen Barnett
2016	J	`jnl`	Analysing health professionals' learning interactions in online social networks: A social network analysis approach. CoRR Xin Li, Kathleen Gray, Karin Verspoor, Stephen Barnett
2016	J	`jnl`	Coreference resolution improves extraction of Biological Expression Language statements from texts. Database J. Biol. Databases Curation Miji Choi, Haibin Liu, William A. Baumgartner Jr., Justin Zobel, Karin Verspoor
2016	—	`conf`	Evaluation of CD-HIT for constructing non-redundant databases. BIBM Qingyu Chen, Yu Wan, Yang Lei, Justin Zobel, Karin Verspoor
2016	—	`conf`	Exploiting Tree Kernels for High Performance Chemical Induced Disease Relation Extraction. SMBM Nagesh Panyam Chandrasekarasastry, Karin Verspoor, Trevor Cohn, Kotagiri Ramamohanarao
2016	Misc	`conf`	Finding and Exploring Health Information with a Slider-Based User Interface. HIC Patrick Cheong-Iao Pang, Karin Verspoor, Jon M. Pearce, Shanton Chang
2016	—	`conf`	Findings of the 2016 Conference on Machine Translation. WMT Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Varvara Logacheva, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Martin Popel, Matt Post, Raphael Rubino, Carolina Scarton, Lucia Specia, Marco Turchi, Karin Verspoor, Marcos Zampieri
2016	—	`conf`	Innovation in Designing Health Information Websites: Results from a Quantitative Study. PACIS Patrick Cheong-Iao Pang, Shanton Chang, Karin Verspoor, Jon M. Pearce
2016	—	`conf`	Rev at SemEval-2016 Task 2: Aligning Chunks by Lexical, Part of Speech and Semantic Equivalence. SemEval@NAACL-HLT Ping Tan, Karin Verspoor, Tim Miller
2016	—	`conf`	SeeDev Binary Event Extraction using SVMs and a Rich Feature Set. BioNLP (Shared Task) Nagesh Panyam Chandrasekarasastry, Gitansh Khirbat, Karin Verspoor, Trevor Cohn, Kotagiri Ramamohanarao
2016	Misc	`conf`	Syndromic Surveillance through Measuring Lexical Shift in Emergency Department Chief Complaint Texts. ALTA Hafsah Aamer, Bahadorreza Ofoghi, Karin Verspoor
2016	J	`jnl`	Text mining electronic hospital records to automatically classify admissions against disease: Measuring the impact of linking data sources. J. Biomed. Informatics Simon Kocbek, Lawrence Cavedon, David Martínez, Christopher Bain, Chris Mac Manus, Gholamreza Haffari, Ingrid Zukerman, Karin Verspoor
2016	J	`jnl`	Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop. J. Biomed. Semant. Karin Verspoor, Anika Oellrich, Nigel Collier, Tudor Groza, Philippe Rocca-Serra, Larisa N. Soldatova, Michel Dumontier, Nigam Shah
2016	Misc	`conf`	Towards Early Discovery of Salient Health Threats: A Social Media Emotion Classification Technique. PSB Bahadorreza Ofoghi, Meghan Mann, Karin Verspoor
2016	J	`jnl`	Towards a Methodology for Nursing-Specific Clinical Decision Support Systems (CDSS). J. Decis. Syst. Tanvir Ahamed, Reeva Lederman, Rachelle Bosua, Karin Verspoor, Wray L. Buntine, Graeme Hart
2016	Misc	`conf`	What are health website visitors doing: insights from visualisations towards exploratory search. OZCHI Patrick Cheong-Iao Pang, Mitchell Harrop, Karin Verspoor, Jon M. Pearce, Shanton Chang
2015	C	`ed.`	14th IEEE International Conference on Machine Learning and Applications, ICMLA 2015, Miami, FL, USA, December 9-11, 2015 ICMLA Tao Li, Lukasz A. Kurgan, Vasile Palade, Randy Goebel, Andreas Holzinger, Karin Verspoor, M. Arif Wani
2015	Misc	`conf`	Better Health Explorer: Designing for Health Information Seekers. OZCHI Patrick Cheong-Iao Pang, Karin Verspoor, Jon M. Pearce, Shanton Chang
2015	A	`conf`	DTMBIO 2015: International Workshop on Data and Text Mining in Biomedical Informatics. CIKM Min Song, Doheon Lee, Karin Verspoor
2015	Misc	`conf`	Domain Adaption of Named Entity Recognition to Support Credit Risk Assessment. ALTA Julio Cesar Salinas Alvarado, Karin Verspoor, Timothy Baldwin
2015	—	`conf`	Drawing on millions of biomedical journal publications to do predictive biology. BigComp Karin Verspoor
2015	—	`conf`	Evaluation of a Machine Learning Duplicate Detection Method for Bioinformatics Databases. DTMBIO@CIKM Qingyu Chen, Justin Zobel, Karin Verspoor
2015	—	`conf`	Extraction of Fine-grained Semantic Relations for the Human Variome. DTMBIO@CIKM Karin Verspoor, Go Eun Heo, Keun Young Kang, Min Song
2015	J	`jnl`	Optimizing graph-based patterns to extract biomedical events from the literature. BMC Bioinform. Haibin Liu, Karin Verspoor, Donald C. Comeau, Andrew D. MacKinlay, W. John Wilbur
2015	—	`ed.`	Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, DTMBIO 2015, Melbourne, Australia, October 23, 2015 DTMBIO@CIKM Doheon Lee, Min Song, Karin Verspoor
2015	J	`jnl`	Special issue on bio-ontologies and phenotypes. J. Biomed. Semant. Larisa N. Soldatova, Nigel Collier, Anika Oellrich, Tudor Groza, Karin Verspoor, Philippe Rocca-Serra, Michel Dumontier, Nigam H. Shah
2015	Misc	`conf`	Structural Alignment as the Basis to Improve Significant Change Detection in Versioned Sentences. ALTA Ping Ping Tan, Karin Verspoor, Timothy Miller
2015	J	`jnl`	Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013. Bioinform. Karin Verspoor, Hagit Shatkay, Lynette Hirschman, Christian Blaschke, Alfonso Valencia
2015	J	`jnl`	The CHEMDNER corpus of chemicals and drugs and its annotation principles. J. Cheminformatics Martin Krallinger, Obdulia Rabal, Florian Leitner, Miguel Vazquez, David Salgado, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M. Lowe, Roger A. Sayle, Riza Theresa Batista-Navarro, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sérgio Matos, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ho Ryu, S. V. Ramanan, P. Senthil Nathan, Slavko Zitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A. Akhondi, Jan A. Kors, Shuo Xu, Xin An, Utpal Kumar Sikdar, Asif Ekbal, Masaharu Yoshioka, Thaer M. Dieb, Miji Choi, Karin Verspoor, Madian Khabsa, C. Lee Giles, Hongfang Liu, Ravikumar Komandur Elayavilli, Andre Lamurias, Francisco M. Couto, Hong-Jie Dai, Richard Tzong-Han Tsai, Caglar Ata, Tolga Can, Anabel Usie, Rui Alves, Isabel Segura-Bedmar, Paloma Martínez, Julen Oyarzabal, Alfonso Valencia
2014	Misc	`conf`	Analysis of Coreference Relations in the Biomedical Literature. ALTA Miji Choi, Karin Verspoor, Justin Zobel
2014	J	`jnl`	Annokey: an annotation tool based on key term search of the NCBI Entrez Gene database. Source Code Biol. Medicine Daniel J. Park, Tu Nguyen-Dumont, Sori Kang, Karin Verspoor, Bernard J. Pope
2014	Misc	`conf`	Automated Generation of Test Suites for Error Analysis of Concept Recognition Systems. ALTA Tudor Groza, Karin Verspoor
2014	J	`jnl`	BioC interoperability track overview. Database J. Biol. Databases Curation Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
2014	—	`ch.`	Biomedical Text Mining: State-of-the-Art, Open Problems and Future Challenges. Interactive Knowledge Discovery and Data Mining in Biomedical Informatics Andreas Holzinger, Johannes Schantl, Miriam Schroettner, Christin Seifert, Karin Verspoor
2014	—	`conf`	Designing for Health Exploratory Seeking Behaviour. MedIR@SIGIR Patrick Cheong-Iao Pang, Karin Verspoor, Shanton Chang, Jon M. Pearce
2014	—	`conf`	Evaluation of Coreference Resolution for Biomedical Text. MedIR@SIGIR Miji Choi, Karin Verspoor, Justin Zobel
2014	Misc	`conf`	Exploring Temporal Patterns in Emergency Department Triage Notes with Topic Models. ALTA Simon Kocbek, Karin Verspoor, Wray L. Buntine
2014	—	`conf`	Integrating UIMA with Alveo, a human communication science virtual laboratory. OIAF4HLT@COLING Dominique Estival, Steve Cassidy, Karin Verspoor, Andrew MacKinlay, Denis Burnham
2014	J	`jnl`	Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. BMC Bioinform. Christopher S. Funk, William A. Baumgartner Jr., Benjamin Garcia, Christophe Roeder, Michael Bada, K. Bretonnel Cohen, Lawrence E. Hunter, Karin Verspoor
2014	J	`jnl`	Literature mining of genetic variants for curation: quantifying the importance of supplementary material. Database J. Biol. Databases Curation Antonio Jimeno-Yepes, Karin Verspoor
2014	—	`conf`	Mapping Biomedical Vocabularies: A Semi-Automated Term Matching Approach. ICIMTH Bahadorreza Ofoghi, Guillermo López-Campos, Fernando José Martín-Sánchez, Karin Verspoor
2014	J	`jnl`	Mutation extraction tools can be combined for robust recognition of genetic variants in the literature. F1000Research Antonio Jimeno-Yepes, Karin Verspoor
2014	—	`conf`	Online Health Information seeking Behaviour: Understanding Different Search Approaches. PACIS Patrick Cheong-Iao Pang, Shanton Chang, Jon M. Pearce, Karin Verspoor
2014	—	`conf`	Practice-based Evidence in Medicine: Where Information Retrieval Meets Data Mining. MedIR@SIGIR Karin Verspoor
2014	A*	`conf`	Standardized Mutual Information for Clustering Comparisons: One Step Further in Adjustment for Chance. ICML Simone Romano, James Bailey, Xuan Vinh Nguyen, Karin Verspoor
2014	—	`conf`	Two platforms for research in Human Communication Science: The AusTalk corpus and the Alveo Virtual Laboratory. O-COCOSDA Denis Burnham, Dominique Estival, Steve Cassidy, P. Sefton, Karin Verspoor
2014	A*	`conf`	What Can We Get From 1000 Tokens? A Case Study of Multilingual POS Tagging For Resource-Poor Languages. EMNLP Long Duong, Trevor Cohn, Karin Verspoor, Steven Bird, Paul Cook
2013	J	`jnl`	Acquisition and evaluation of verb subcategorization resources for biomedicine. J. Biomed. Informatics Laura Rimell, Thomas Lippincott, Karin Verspoor, Helen L. Johnson, Anna Korhonen
2013	J	`jnl`	Annotating the biomedical literature for the human variome. Database J. Biol. Databases Curation Karin Verspoor, Antonio Jimeno-Yepes, Lawrence Cavedon, Tara McIntosh, Asha Herten-Crabb, Zoë Thomas, John-Paul Plazzer
2013	J	`jnl`	Approaches to verb subcategorization for biomedicine. J. Biomed. Informatics Thomas Lippincott, Laura Rimell, Karin Verspoor, Anna Korhonen
2013	J	`jnl`	BioC: a minimalist approach to interoperability for biomedical text processing. Database J. Biol. Databases Curation Donald C. Comeau, Rezarta Islamaj Dogan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
2013	J	`jnl`	Combining heterogeneous data sources for accurate functional annotation of proteins. BMC Bioinform. Artem Sokolov, Christopher S. Funk, Kiley Graim, Karin Verspoor, Asa Ben-Hur
2013	Misc	`conf`	Detection of Protein Catalytic Sites in the Biomedical Literature. Pacific Symposium on Biocomputing Karin Verspoor, Andrew MacKinlay, Judith D. Cohn, Michael E. Wall
2013	—	`conf`	Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data. BioNLP@ACL (Shared Task) Andrew MacKinlay, David Martínez, Antonio Jimeno-Yepes, Haibin Liu, W. John Wilbur, Karin Verspoor
2013	—	`conf`	Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics. BioNLP@ACL (Shared Task) Haibin Liu, Karin Verspoor, Donald C. Comeau, Andrew MacKinlay, W. John Wilbur
2013	Misc	`conf`	Impact of Corpus Diversity and Complexity on NER Performance. ALTA Tatyana Shmanina, Ingrid Zukerman, Antonio Jimeno-Yepes, Lawrence Cavedon, Karin Verspoor
2013	Misc	`ed.`	Proceedings of the Australasian Language Technology Association Workshop, ALTA 2013, Brisbane, Australia, December 4-6, 2013 ALTA Sarvnaz Karimi, Karin Verspoor
2013	J	`jnl`	Representing annotation compositionality and provenance for the Semantic Web. J. Biomed. Semant. Kevin M. Livingston, Michael Bada, Lawrence E. Hunter, Karin Verspoor
2013	Misc	`conf`	e-Learning with Kaggle in Class: Adapting the ALTA Shared Task 2013 to a Class Project. ALTA Karin Verspoor, Jeremy Nicholson
2012	J	`jnl`	A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinform. Karin Verspoor, Kevin Bretonnel Cohen, Arrick Lanfranchi, Colin Warner, Helen L. Johnson, Christophe Roeder, Jinho D. Choi, Christopher S. Funk, Yuriy Malenkiy, Miriam Eckert, Nianwen Xue, William A. Baumgartner Jr., Michael Bada, Martha Palmer, Lawrence E. Hunter
2012	J	`jnl`	BioLemmatizer: a lemmatization tool for morphological processing of biomedical text. J. Biomed. Semant. Haibin Liu, Tom Christiansen, William A. Baumgartner Jr., Karin Verspoor
2012	J	`jnl`	Concept annotation in the CRAFT corpus. BMC Bioinform. Michael Bada, Miriam Eckert, Donald Evans, Kristin Garcia, Krista Shipley, Dmitry Sitnikov, William A. Baumgartner Jr., K. Bretonnel Cohen, Karin Verspoor, Judith A. Blake, Lawrence E. Hunter
2012	J	`jnl`	Literature mining of protein-residue associations with graph rules learned through distant supervision. J. Biomed. Semant. K. E. Ravikumar, Haibin Liu, Judith D. Cohn, Michael E. Wall, Karin Verspoor
2012	—	`conf`	Simple Similarity-based Question Answering Strategies for Biomedical Text. CLEF (Online Working Notes/Labs/Workshop) David Martínez, Andrew MacKinlay, Diego Mollá Aliod, Lawrence Cavedon, Karin Verspoor
2012	—	`conf`	Subgraph Matching-Based Literature Mining for Biomedical Relations and Events. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text Haibin Liu, Vlado Keselj, Christian Blouin, Karin Verspoor
2012	—	`conf`	Towards Adaptation of Linguistic Annotations to Scholarly Annotation Formalisms on the Semantic Web. LAW@ACL Karin Verspoor, Kevin M. Livingston
2011	—	`conf`	Fast and simple semantic class assignment for biomedical text. BioNLP@ACL K. Bretonnel Cohen, Tom Christiansen, William A. Baumgartner Jr., Karin Verspoor, Lawrence Hunter
2011	—	`conf`	From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text. BioNLP@ACL (Shared Task) Haibin Liu, Ravikumar Komandur Elayavilli, Karin Verspoor
2011	J	`jnl`	High-Precision Biological Event Extraction: Effects of System and of Data. Comput. Intell. K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Hannah J. Tipney, Lawrence Hunter
2011	—	`conf`	Pattern Learning through Distant Supervision for Extraction of Protein-Residue Associations in the Biomedical Literature. ICMLA (2) K. E. Ravikumar, Haibin Liu, Judith D. Cohn, Michael E. Wall, Karin Verspoor
2011	J	`jnl`	The gene normalization task in BioCreative III. BMC Bioinform. Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin M. Livingston, W. John Wilbur
2011	J	`jnl`	U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2010	J	`jnl`	A UIMA wrapper for the NCBO annotator. Bioinform. Christophe Roeder, Clément Jonquet, Nigam H. Shah, William A. Baumgartner Jr., Karin Verspoor, Lawrence Hunter
2010	J	`jnl`	Exploring Species-Based Strategies for Gene Normalization. IEEE ACM Trans. Comput. Biol. Bioinform. Karin Verspoor, Christophe Roeder, Helen L. Johnson, K. Bretonnel Cohen, William A. Baumgartner Jr., Lawrence Hunter
2010	—	`conf`	Leveraging Gene Ontology Annotations to Improve a Memory-Based Language Understanding System. ICSC Kevin M. Livingston, Helen L. Johnson, Karin Verspoor, Lawrence Hunter
2010	B	`conf`	Test Suite Design for Biomedical Ontology Concept Recognition Systems. LREC K. Bretonnel Cohen, Christophe Roeder, William A. Baumgartner Jr., Lawrence Hunter, Karin Verspoor
2010	J	`jnl`	The structural and content aspects of abstracts versus bodies of full text journal articles are different. BMC Bioinform. K. Bretonnel Cohen, Helen L. Johnson, Karin Verspoor, Christophe Roeder, Lawrence Hunter
2010	—	`conf`	Visualization and Language Processing for Supporting Analysis across the Biomedical Literature. KES (4) Carsten Görg, Hannah J. Tipney, Karin Verspoor, William A. Baumgartner Jr., K. Bretonnel Cohen, John T. Stasko, Lawrence Hunter
2009	—	`conf`	High-precision biological event extraction with a concept recognizer. BioNLP@HLT-NAACL (Shared Task) K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Lawrence Hunter
2009	J	`jnl`	Ontology quality assurance through analysis of term transformations. Bioinform. Karin Verspoor, Daniel Dvorkin, K. Bretonnel Cohen, Lawrence Hunter
2009	J	`jnl`	The textual characteristics of traditional and Open Access scientific journals are similar. BMC Bioinform. Karin Verspoor, K. Bretonnel Cohen, Lawrence Hunter
2008	C	`conf`	A Semantics-Enhanced Language Model for Unsupervised Word Sense Disambiguation. CICLing Shou-De Lin, Karin Verspoor
2008	—	`conf`	Exploiting Term Relations for Semantic Hierarchy Construction. ICSC Cliff A. Joslyn, Patrick R. Paulson, Karin Verspoor
2008	J	`jnl`	Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks CoRR Alaa Abi-Haidar, Jasleen Kaur, Ana Gabriela Maguitman, Predrag Radivojac, Andreas Rechtsteiner, Karin Verspoor, Zhiping Wang, Luis M. Rocha
2007	—	`conf`	Knowledge Integration in OpenWorlds: Utilizing the Mathematics of Hierarchical Structure. ICSC Cliff A. Joslyn, Karin Verspoor, Damian Gessler
2006	Misc	`conf`	Large-Scale Testing of Bibliome Informatics Using Pfam Protein Families. Pacific Symposium on Biocomputing Ana Gabriela Maguitman, Andreas Rechtsteiner, Karin Verspoor, Charlie E. M. Strauss, Luis M. Rocha
2006	—	`ed.`	Proceedings of the Workshop on Linking Natural Language and Biology, BioNLP@NAACL-HLT 2006, New York, NY, USA, June 8, 2006 BioNLP@NAACL-HLT Karin Verspoor, Kevin Bretonnel Cohen, Ben Goertzel, Inderjeet Mani
2005	J	`jnl`	Protein annotation as term categorization in the gene ontology using word proximity networks. BMC Bioinform. Karin Verspoor, Judith D. Cohn, Cliff A. Joslyn, Susan M. Mniszewski, Andreas Rechtsteiner, Luis M. Rocha, Tiago Simas