Karin Shmueli

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
NeuroImage
Carlos Milovic, Patrick S. Fuchs, Mathias Lambert, Oriana Arsenov, Oliver C. Kiersnowski, Laxmi Muralidharan, Russell Murdoch, Jannette Nassar, Karin Shmueli
2025 J jnl
IEEE Trans. Biomed. Eng.
Liad Doniza, Mitchel Lee, Tamar Blumenfeld-Katzir, Moran Artzi, Dafna Ben-Bashat, Orna Aizenstein, Dvir Radunsky, Fenella J. Kirkham, George Thomas, Rimona S. Weil, Karin Shmueli, Noam Ben-Eliezer
2021 J jnl
NeuroImage
Ronja C. Berg, Christine Preibisch, David L. Thomas, Karin Shmueli, Emma Biondetti
2021 J jnl
NeuroImage
Sara Lorio, Jan Sedlacik, Po-Wah So, Harold G. Parkes, Roxana Gunny, Ulrike Löbel, Yao-Feng Li, Olumide K. Ogunbiyi, Talisa Mistry, Emma Dixon, Sophie Adler, J. Helen Cross, Torsten Baldeweg, Thomas S. Jacques, Karin Shmueli, David W. Carmichael
2019 J jnl
NeuroImage
Emma Biondetti, Alvaro Rojas-Villabona, Magdalena J. Sokolska, Francesca Benedetta Pizzini, Hans Rolf Jäger, David L. Thomas, Karin Shmueli
2019 J jnl
IEEE Trans. Medical Imaging
Anita Karsa, Karin Shmueli
2017 J jnl
NeuroImage
James M. O'Callaghan, Holly E. Holmes, Nick M. Powell, Jack A. Wells, Ozama Ismail, Ian F. Harrison, Bernard Siow, Ross A. Johnson, Zeshan Ahmed, Alice Fisher, Soraya Meftah, Michael J. O'Neill, Tracey K. Murray, Emily C. Collins, Karin Shmueli, Mark F. Lythgoe
2012 J jnl
NeuroImage
Bing Yao, Tie-Qiang Li, Peter van Gelderen, Karin Shmueli, Jacco A. de Zwart, Jeff H. Duyn
2012 J jnl
NeuroImage
Jongho Lee, Karin Shmueli, Byeong-Teck Kang, Bing Yao, Masaki Fukunaga, Peter van Gelderen, Sara Palumbo, Francesca Bosetti, Afonso C. Silva, Jeff H. Duyn
2009 J jnl
NeuroImage
Bing Yao, Tie-Qiang Li, Peter van Gelderen, Karin Shmueli, Jacco A. de Zwart, Jeff H. Duyn
2007 J jnl
NeuroImage
Karin Shmueli, Peter van Gelderen, Jacco A. de Zwart, Silvina G. Horovitz, Masaki Fukunaga, J. Martijn Jansma, Jeff H. Duyn
tests/unit/test_apk_apktool_wrapper.py
← Index tests/unit/test_apk_apktool_wrapper.py python
"""
Unit tests for apktool wrapper subprocess management and smali directory detection.

All subprocess calls are mocked — no apktool/Java installation required.
"""
import os
import tempfile

import pytest
from unittest.mock import MagicMock, patch

pytestmark = [pytest.mark.unit, pytest.mark.apk, pytest.mark.decompile]


class TestApktoolDisassembler:
    """Tests for ApktoolDisassembler subprocess wrapper."""

    @patch.dict(os.environ, {}, clear=False)
    def test_init_defaults(self):
        os.environ.pop("APKTOOL_PATH", None)
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        a = ApktoolDisassembler()
        assert a.apktool_path == "apktool"
        assert a.timeout == 120

    def test_init_custom(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        a = ApktoolDisassembler(apktool_path="/opt/apktool", timeout=120)
        assert a.apktool_path == "/opt/apktool"
        assert a.timeout == 120

    def test_init_from_env(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        with patch.dict(os.environ, {"APKTOOL_PATH": "/usr/bin/apktool", "APKTOOL_TIMEOUT": "90"}):
            a = ApktoolDisassembler()
            assert a.apktool_path == "/usr/bin/apktool"
            assert a.timeout == 90

    @patch("subprocess.Popen")
    def test_disassemble_success(self, mock_popen):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("output", "")
        mock_proc.returncode = 0
        mock_popen.return_value = mock_proc

        a = ApktoolDisassembler()
        result = a.disassemble("/test.apk", "/output")
        assert result is True

    @patch("subprocess.Popen")
    def test_disassemble_failure(self, mock_popen):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("", "error")
        mock_proc.returncode = 1
        mock_popen.return_value = mock_proc

        a = ApktoolDisassembler(log=MagicMock())
        result = a.disassemble("/test.apk", "/output")
        assert result is False

    @patch("subprocess.Popen")
    def test_disassemble_timeout(self, mock_popen):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        import subprocess
        mock_proc = MagicMock()
        mock_proc.communicate.side_effect = subprocess.TimeoutExpired(cmd="apktool", timeout=10)
        mock_proc.pid = 12345
        mock_popen.return_value = mock_proc

        with patch("os.getpgid", return_value=12345), \
             patch("os.killpg"):
            a = ApktoolDisassembler(timeout=10, log=MagicMock())
            result = a.disassemble("/test.apk", "/output")
            assert result is False

    @patch("subprocess.Popen", side_effect=FileNotFoundError)
    def test_disassemble_not_found(self, mock_popen):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        a = ApktoolDisassembler(log=MagicMock())
        result = a.disassemble("/test.apk", "/output")
        assert result is False

    @patch("subprocess.Popen")
    def test_disassemble_command_args(self, mock_popen):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("", "")
        mock_proc.returncode = 0
        mock_popen.return_value = mock_proc

        a = ApktoolDisassembler(apktool_path="/opt/apktool")
        a.disassemble("/test.apk", "/output")

        cmd = mock_popen.call_args[0][0]
        assert cmd[0] == "/opt/apktool"
        assert "d" in cmd
        assert "--no-res" in cmd
        assert "--force" in cmd
        assert "/test.apk" in cmd

    def test_get_smali_directories_single_dex(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        with tempfile.TemporaryDirectory() as tmpdir:
            os.makedirs(os.path.join(tmpdir, "smali"))
            a = ApktoolDisassembler()
            dirs = a.get_smali_directories(tmpdir)
            assert len(dirs) == 1
            assert dirs[0].endswith("smali")

    def test_get_smali_directories_multi_dex(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        with tempfile.TemporaryDirectory() as tmpdir:
            os.makedirs(os.path.join(tmpdir, "smali"))
            os.makedirs(os.path.join(tmpdir, "smali_classes2"))
            os.makedirs(os.path.join(tmpdir, "smali_classes3"))
            # Should not be included
            os.makedirs(os.path.join(tmpdir, "res"))
            os.makedirs(os.path.join(tmpdir, "original"))

            a = ApktoolDisassembler()
            dirs = a.get_smali_directories(tmpdir)
            assert len(dirs) == 3

    def test_get_smali_directories_empty(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        with tempfile.TemporaryDirectory() as tmpdir:
            a = ApktoolDisassembler()
            dirs = a.get_smali_directories(tmpdir)
            assert dirs == []

    def test_get_smali_directories_nonexistent(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        a = ApktoolDisassembler()
        dirs = a.get_smali_directories("/nonexistent/path")
        assert dirs == []