Karen Sachs

16 papers B 1C 1Misc 1Journal 10Unranked 3
YearRankTypeTitle / Venue / Authors
2025 conf
CLeaR
Philippe Brouillard, Chandler Squires, Jonas Wahl, Konrad K, Karen Sachs, Alexandre Drouin, Dhanya Sridhar
2024 J jnl
Bioinform.
Sara Mohammad Taheri, Pruthvi Prakash Navada, Charles Tapley Hoyt, Jeremy Zucker, Karen Sachs, Benjamin M. Gyori, Olga Vitek
2024 J jnl
CoRR
Philippe Brouillard, Chandler Squires, Jonas Wahl, Konrad P. Kording, Karen Sachs, Alexandre Drouin, Dhanya Sridhar
2023 J jnl
Bioinform.
Sara Mohammad Taheri, Vartika Tewari, Rohan Kapre, Ehsan Rahiminasab, Karen Sachs, Charles Tapley Hoyt, Jeremy Zucker, Olga Vitek
2022 J jnl
Bioinform.
Sara Mohammad Taheri, Jeremy Zucker, Charles Tapley Hoyt, Karen Sachs, Vartika Tewari, Robert Osazuwa Ness, Olga Vitek
2022 J jnl
Nat. Comput. Sci.
Divya Ramamoorthy, Kristen Severson, Soumya Ghosh, Karen Sachs, Emily G. Baxi, Alyssa N. Coyne, Elizabeth Mosmiller, Lindsey Hayes, Aianna Cerezo, Omar Ahmad, Promit Roy, Steven Zeiler, John W. Krakauer, Jonathan Li, Aneesh Donde, Nhan Huynh, Miriam Adam, Brook T. Wassie, Alexander LeNail, Natasha Leanna Patel-Murray, Yogindra Raghav, Velina Kozareva, Stanislav Tsitkov, Tobias Ehrenberger, Julia A. Kaye, Leandro Lima, Stacia K. Wyman, Edward Vertudes, Naufa Amirani, Krishna Raja, Reuben Thomas, Ryan G. Lim, Ricardo Miramontes, Jie Wu, Vineet Vaibhav, Andrea Matlock, Vidya Venkatraman, Ronald Holewenski, Niveda Sundararaman, Rakhi Pandey, Danica-Mae Manalo, Aaron Frank, Loren Ornelas, Lindsey Panther, Emilda Gomez, Erick Galvez, Daniel Pérez, Imara Meepe, Susan Lei, Louis Pinedo, Chunyan Liu, Ruby Moran, Dhruv Sareen, Barry Landin, Carla Agurto, Guillermo A. Cecchi, Raquel Norel, Sara Thrower, Sarah Luppino, Alanna Farrar, Lindsay Pothier, Hong Yu, Ervin Sinani, Prasha Vigneswaran, Alexander V. Sherman, S. Michelle Farr, Berhan Mandefro, Hannah Trost, Maria G. Banuelos, Veronica Garcia, Michael Workman, Richie Ho, Robert Baloh, Jennifer Roggenbuck, Matthew B. Harms, Carolyn Prina, Sarah Heintzman, Stephen Kolb, Jennifer Stocksdale, Keona Wang, Todd Morgan, Daragh Heitzman, Arish Jamil, Jennifer Jockel-Balsarotti, Elizabeth Karanja, Jesse Markway, Molly McCallum, Tim Miller, Ben Joslin, Deniz Alibazoglu, Senda Ajroud-Driss, Jay C. Beavers, Mary Bellard, Elizabeth Bruce, Nicholas J. Maragakis, Merit E. Cudkowicz, James D. Berry, Terri Thompson, Steven Finkbeiner, Leslie M. Thompson, Jennifer E. Van Eyk, Clive N. Svendsen, Jeffrey D. Rothstein, Jonathan D. Glass, Christina N. Fournier, Alexander Sherman, Christian Lunetta, David Walk, Ghazala Hayat, James Wymer, Kelly Gwathmey, Nicholas Olney, Terry Heiman-Patterson, Ximena Arcila-Londono, Kenneth Faulconer, Ervin Sanani, Alex Berger, Julia Mirochnick, Todd M. Herrington, Kenney Ng, Ernest Fraenkel
2018 J jnl
J. Comput. Biol.
Robert Osazuwa Ness, Karen Sachs, Parag Mallick, Olga Vitek
2018 J jnl
Bioinform.
Nima Aghaeepour, Erin F. Simonds, David J. H. F. Knapp, Robert V. Bruggner, Karen Sachs, Anthony Culos, Pier Federico Gherardini, Nikolay Samusik, Gabriela K. Fragiadakis, Sean Bendall, Brice Gaudilliere, Martin S. Angst, Connie J. Eaves, William A. Weiss, Wendy J. Fantl, Garry P. Nolan
2017 B conf
RECOMB
Robert Osazuwa Ness, Karen Sachs, Parag Mallick, Olga Vitek
2017 J jnl
CoRR
Alexander LeNail, Ludwig Schmidt, Johnathan Li, Tobias Ehrenberger, Karen Sachs, Stefanie Jegelka, Ernest Fraenkel
2015 J jnl
XRDS
Karen Sachs, Tiffany Chen
2010 conf
NIPS Causality: Objectives and Assessment
Sleiman Itani, Mesrob I. Ohannessian, Karen Sachs, Garry P. Nolan, Munther A. Dahleh
2009 Misc conf
Pacific Symposium on Biocomputing
Karen Sachs, Sleiman Itani, J. Fitzgerald, L. Wille, Birgit Schoeberl, Munther A. Dahleh, Garry P. Nolan
2009 J jnl
J. Comput. Biol.
Karen Sachs, Solomon Itani, Jennifer Carlisle, Garry P. Nolan, Dana Pe'er, Douglas A. Lauffenburger
2008 C conf
BIBE
Sleiman Itani, Karen Sachs, Garry P. Nolan, Munther A. Dahleh
2004 conf
CSB
Karen Sachs, Omar D. Perez, Dana Pe'er, Garry P. Nolan, David K. Gifford, Tommi S. Jaakkola, Douglas A. Lauffenburger
edge-cases.md
← Index edge-cases.md markdown
# Edge Cases Samples
This is a list of samples that represent some edge cases where the extractors fail (completely or in part) to parse information we know to be there

**Sample:**

**VT:**

**Description:**

**Other:**


## PE Samples
### DotNET
**Sample:** `"/Users/p4c0/_samples/test-unzipped/98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7"`

**VT:** https://www.virustotal.com/gui/file/98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7/details

**Description:**
It is recognized as dotnet but it fails to extract any information, returning an empty dictionary:
```
{
    "sha256": "98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7",
    "md5": "a32eca5321baaf3d9b62ed129458a814",
    "sha1": "4524e99a3849c815a48579fb916e53cded739f46",
    "dotnet": {
        "Event" : [],
        "ExternalUnmanagedMethods" : [],
        "ExternalUnmanagedModules" : [],
        "ManifestResource" : [],
        "Resources" : []
    },
    "analysis_date": "2025-01-22 13:16:20.897"
}
```

with the following errors:
```
2025-01-22 14:16:20,896 - 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 - ERROR - Format error dotnet file 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 Full error : 'CLR header of file is most likely corrupt.'
98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 - ERROR - Error getting metadata tables for 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7: 'NoneType' object has no attribute 'existent_metadata_tables'
2025-01-22 14:16:20,896 - 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 - ERROR - Error extracting GUID for 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7: 'NoneType' object has no attribute 'guid_stream_guids'
2025-01-22 14:16:20,896 - 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 - ERROR - Error getting CLR version for 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7: 'NoneType' object has no attribute 'get_runtime_target_version'
2025-01-22 14:16:20,896 - 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 - ERROR - Error getting module info for 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7: 'NoneType' object has no attribute 'metadata_table_exists'
2025-01-22 14:16:20,896 - 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 - ERROR - Error getting basic properties for 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7: 'info'
2025-01-22 14:16:20,897 - 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 - ERROR - Error getting assembly flags for 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7: 'NoneType' object has no attribute 'clr_header'
2025-01-22 14:16:20,897 - 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 - ERROR - Error getting more metadata/info clr header for 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7: 'NoneType' object has no attribute 'get_number_of_streams'
2025-01-22 14:16:20,897 - 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 - ERROR - Error getting streams for 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7: 'NoneType' object has no attribute 'get_stream_names'
2025-01-22 14:16:20,897 - 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7 - ERROR - Error getting resources for 98eca73a0e33a41a72ac55c4bd0a75e5c83fdc3de382d031346045105cdf10e7: 'NoneType' object has no attribute 'has_resources'
```
**Other:**