Karen O'Connor

25 papers A* 1Misc 3Journal 13Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
Database J. Biol. Databases Curation
Davy Weissenbacher, Xinwei Zhao, Jessica R. C. Priestley, Katherine M. Szigety, Sarah F. Schmidt, Karen O'Connor, Ekin Soysal, Kirk Roberts, Jiewei Qi, Ling Luo, Zhihao Yang, Hongfei Lin, Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T. Ian Simpson, Joram M. Posma, Antoine Lain, Mujeen Sung, Jaewoo Kang, Areej Alhassan, Viktor Schlegel, Monira Aloud, Riza Batista-Navarro, Goran Nenadic, Ying-Jia Lin, Zhi-Quan Feng, Hung-Yu Kao, Ian M. Campbell, Graciela Gonzalez-Hernandez
2024 A* conf
EMNLP
Dongfang Xu, Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Graciela Gonzalez-Hernandez
2024 J jnl
J. Biomed. Informatics
Davy Weissenbacher, Katherine R. Courtright, Siddharth Rawal, Andrew Crane-Droesch, Karen O'Connor, Nicholas Kuhl, Corinne Merlino, Anessa Foxwell, Lindsay Haines, Joseph C. Puhl, Graciela Gonzalez-Hernandez
2024 J jnl
CoRR
Yao Ge, Sudeshna Das, Karen O'Connor, Mohammed Ali Al-Garadi, Graciela Gonzalez-Hernandez, Abeed Sarker
2023 J jnl
Database J. Biol. Databases Curation
Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
2023 J jnl
BioData Min.
Jesse G. Meyer, Ryan J. Urbanowicz, Patrick C. N. Martin, Karen O'Connor, Ruowang Li, Pei-Chen Peng, Tiffani J. Bright, Nicholas P. Tatonetti, Kyoung-Jae Won, Graciela Gonzalez-Hernandez, Jason H. Moore
2021 J jnl
J. Am. Medical Informatics Assoc.
Davy Weissenbacher, Suyu Ge, Ari Z. Klein, Karen O'Connor, Robert Gross, Sean Hennessy, Graciela Gonzalez-Hernandez
2021 conf
SMM4H@NAACL-HLT
Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
2021 ed.
SMM4H@NAACL-HLT
Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré-Maduell, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
2021 J jnl
BMC Medical Informatics Decis. Mak.
Mohammed Ali Al-Garadi, Yuan-Chi Yang, Haitao Cai, Yucheng Ruan, Karen O'Connor, Graciela Gonzalez-Hernandez, Jeanmarie Perrone, Abeed Sarker
2020 J jnl
Bioinform.
Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch
2020 conf
SMM4H@COLING
Ari Z. Klein, Ilseyar Alimova, Ivan Flores, Arjun Magge, Zulfat Miftahutdinov, Anne-Lyse Minard, Karen O'Connor, Abeed Sarker, Elena Tutubalina, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2020 ed.
SMM4H@COLING
Graciela Gonzalez-Hernandez, Ari Z. Klein, Ivan Flores, Davy Weissenbacher, Arjun Magge, Karen O'Connor, Abeed Sarker, Anne-Lyse Minard, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova
2019 J jnl
CoRR
Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge Ranganatha, Graciela Gonzalez-Hernandez
2019 J jnl
J. Am. Medical Informatics Assoc.
Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez
2019 conf
SMM4H@ACL
Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn R. Daughton, Karen O'Connor, Michael J. Paul, Graciela Gonzalez-Hernandez
2019 conf
SemEval@NAACL-HLT
Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez
2018 conf
SMM4H@EMNLP
Takeshi Onishi, Davy Weissenbacher, Ari Z. Klein, Karen O'Connor, Graciela Gonzalez-Hernandez
2018 J jnl
Bioinform.
Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
2018 Misc conf
PSB
Graciela Gonzalez-Hernandez, Abeed Sarker, Karen O'Connor, Casey S. Greene, Hongfang Liu
2017 conf
BioNLP
Ari Z. Klein, Abeed Sarker, Masoud Rouhizadeh, Karen O'Connor, Graciela Gonzalez
2016 Misc conf
PSB
Ryan Sullivan, Abeed Sarker, Karen O'Connor, Amanda Goodin, Mark Karlsrud, Graciela Gonzalez
2015 J jnl
J. Am. Medical Informatics Assoc.
Azadeh Nikfarjam, Abeed Sarker, Karen O'Connor, Rachel E. Ginn, Graciela Gonzalez-Hernandez
2015 J jnl
J. Biomed. Informatics
Abeed Sarker, Rachel E. Ginn, Azadeh Nikfarjam, Karen O'Connor, Karen L. Smith, Swetha Jayaraman, Tejaswi Upadhaya, Graciela Gonzalez-Hernandez
2014 Misc conf
AMIA
Karen O'Connor, Azadeh Nikfarjam, Rachel E. Ginn, Pranoti Pimpalkhute, Abeed Sarker, Karen L. Smith, Graciela Gonzalez-Hernandez
tests/unit/test_decompile_analysis.py
← Index tests/unit/test_decompile_analysis.py python
"""Unit tests (mocked Binary Ninja) for analysis modules:
- bninja/analysis/cfg.py — CFGAnalysis
- bninja/analysis/disassembly.py — DisassemblyAnalysis
- bninja/analysis/low_level.py — LowLevelAnalysis
"""
import sys
import pytest
from unittest.mock import MagicMock

from tests.unit.conftest_binja_stubs import (
    install_binja_stubs,
    BranchType,
    InstructionTextTokenType,
    MockBasicBlock,
    MockEdge,
    MockFunction,
    MockToken,
    MockDisassemblyLine,
    MockBinaryView,
    MockSymbol,
    SymbolType,
    LowLevelILOperation,
)

install_binja_stubs()

from redb.extractors.decompiler.bninja.analysis.cfg import CFGAnalysis
from redb.extractors.decompiler.bninja.analysis.disassembly import DisassemblyAnalysis
from redb.extractors.decompiler.bninja.arch.x86 import Arch_x86


# ============================================================================
# 9a. CFGAnalysis
# ============================================================================


class TestCFGCyclomaticComplexity:
    def test_cyclomatic_complexity_linear(self):
        """Single block, no edges: E - N + 2 = 0 - 1 + 2 = 1."""
        block = MockBasicBlock(start=0x1000, end=0x1010, outgoing_edges=[])
        func = MockFunction(start=0x1000, basic_blocks=[block])
        cfg = CFGAnalysis(func)
        result = cfg.extract_function_cfg()
        assert result["cyclomatic_complexity"] == 1

    def test_cyclomatic_complexity_branch(self):
        """Diamond: 4 blocks, 4 edges -> 4 - 4 + 2 = 2."""
        entry = MockBasicBlock(start=0x1000, end=0x1010)
        true_b = MockBasicBlock(start=0x1010, end=0x1020)
        false_b = MockBasicBlock(start=0x1020, end=0x1030)
        merge = MockBasicBlock(start=0x1030, end=0x1040)

        entry.outgoing_edges = [MockEdge(target=true_b), MockEdge(target=false_b)]
        true_b.outgoing_edges = [MockEdge(target=merge)]
        false_b.outgoing_edges = [MockEdge(target=merge)]
        merge.outgoing_edges = []

        func = MockFunction(start=0x1000, basic_blocks=[entry, true_b, false_b, merge])
        cfg = CFGAnalysis(func)
        result = cfg.extract_function_cfg()
        assert result["cyclomatic_complexity"] == 2

    def test_cyclomatic_complexity_loop(self):
        """Loop: 3 blocks, 3 edges -> 3 - 3 + 2 = 2."""
        header = MockBasicBlock(start=0x1000, end=0x1010)
        body = MockBasicBlock(start=0x1010, end=0x1020)
        exit_b = MockBasicBlock(start=0x1020, end=0x1030)

        header.outgoing_edges = [MockEdge(target=body), MockEdge(target=exit_b)]
        body.outgoing_edges = [MockEdge(target=header)]
        exit_b.outgoing_edges = []

        func = MockFunction(start=0x1000, basic_blocks=[header, body, exit_b])
        cfg = CFGAnalysis(func)
        result = cfg.extract_function_cfg()
        assert result["cyclomatic_complexity"] == 2


class TestCFGExtractFunctionCFG:
    def _make_simple_cfg(self):
        """Create a simple two-block CFG for testing structure."""
        entry = MockBasicBlock(start=0x1000, end=0x1010)
        exit_b = MockBasicBlock(start=0x1010, end=0x1020)

        entry.outgoing_edges = [MockEdge(source=entry, target=exit_b, edge_type=BranchType.UnconditionalBranch)]
        exit_b.incoming_edges = [MockEdge(source=entry, target=exit_b)]
        exit_b.outgoing_edges = []
        entry.incoming_edges = []

        func = MockFunction(start=0x1000, basic_blocks=[entry, exit_b])
        return func

    def test_extract_function_cfg_structure(self):
        func = self._make_simple_cfg()
        cfg = CFGAnalysis(func)
        result = cfg.extract_function_cfg()
        assert "function_address" not in result
        # New schema: no "blocks" or "measures" nesting
        assert "blocks" not in result
        assert "measures" not in result

    def test_function_cfg_new_keys(self):
        """Assert all expected keys are present in the new output dict."""
        func = self._make_simple_cfg()
        cfg = CFGAnalysis(func)
        result = cfg.extract_function_cfg()
        expected_keys = [
            "cfg_topology_hash",
            "block_count",
            "edge_count",
            "llil_total_operations",
            "call_count",
            "cyclomatic_complexity",
            "loop_count",
            "max_depth",
            "max_fan_out",
            "md_index_topdown",
            "md_index_bottomup",
            "prime_product_llil",
            "cfg_feature_tlsh",
            "wl_minhash",
            "bb_features",
            "cfg_adjacency",
        ]
        for key in expected_keys:
            assert key in result, f"Missing key: {key}"

    def test_returns_none_for_empty_blocks(self):
        func = MockFunction(start=0x1000, basic_blocks=[])
        cfg = CFGAnalysis(func)
        assert cfg.extract_function_cfg() is None


class TestCFGTopologyHash:
    def _make_two_block_cfg(self):
        entry = MockBasicBlock(start=0x1000, end=0x1010)
        exit_b = MockBasicBlock(start=0x1010, end=0x1020)
        entry.outgoing_edges = [MockEdge(target=exit_b)]
        exit_b.outgoing_edges = []
        return MockFunction(start=0x1000, basic_blocks=[entry, exit_b])

    def test_topology_hash_is_16_bytes(self):
        func = self._make_two_block_cfg()
        cfg = CFGAnalysis(func)
        result = cfg.extract_function_cfg()
        assert isinstance(result["cfg_topology_hash"], bytes)
        assert len(result["cfg_topology_hash"]) == 16

    def test_topology_hash_deterministic(self):
        func = self._make_two_block_cfg()
        r1 = CFGAnalysis(func).extract_function_cfg()
        r2 = CFGAnalysis(func).extract_function_cfg()
        assert r1["cfg_topology_hash"] == r2["cfg_topology_hash"]


class TestCFGLoopCount:
    def test_no_loops(self):
        entry = MockBasicBlock(start=0x1000, end=0x1010)
        exit_b = MockBasicBlock(start=0x1010, end=0x1020)
        entry.outgoing_edges = [MockEdge(target=exit_b)]
        exit_b.outgoing_edges = []
        func = MockFunction(start=0x1000, basic_blocks=[entry, exit_b])
        result = CFGAnalysis(func).extract_function_cfg()
        assert result["loop_count"] == 0

    def test_single_loop(self):
        header = MockBasicBlock(start=0x1000, end=0x1010)
        body = MockBasicBlock(start=0x1010, end=0x1020)
        exit_b = MockBasicBlock(start=0x1020, end=0x1030)
        header.outgoing_edges = [MockEdge(target=body), MockEdge(target=exit_b)]
        body.outgoing_edges = [MockEdge(target=header)]
        exit_b.outgoing_edges = []
        func = MockFunction(start=0x1000, basic_blocks=[header, body, exit_b])
        result = CFGAnalysis(func).extract_function_cfg()
        assert result["loop_count"] == 1


class TestCFGMaxDepth:
    def test_max_depth_linear(self):
        entry = MockBasicBlock(start=0x1000, end=0x1010)
        b1 = MockBasicBlock(start=0x1010, end=0x1020)
        b2 = MockBasicBlock(start=0x1020, end=0x1030)
        entry.outgoing_edges = [MockEdge(target=b1)]
        b1.outgoing_edges = [MockEdge(target=b2)]
        b2.outgoing_edges = []
        func = MockFunction(start=0x1000, basic_blocks=[entry, b1, b2])
        result = CFGAnalysis(func).extract_function_cfg()
        assert result["max_depth"] == 2

    def test_max_depth_single_block(self):
        block = MockBasicBlock(start=0x1000, end=0x1010, outgoing_edges=[])
        func = MockFunction(start=0x1000, basic_blocks=[block])
        result = CFGAnalysis(func).extract_function_cfg()
        assert result["max_depth"] == 0


class TestCFGCollectBlockLlilOps:
    """Test that _collect_block_llil_ops correctly maps LLIL data to native blocks."""

    def test_llil_fields_nonzero_with_mock_llil(self):
        """When LLIL is available, llil_total_operations and call_count should be non-zero."""
        # Two native blocks
        entry = MockBasicBlock(start=0x1000, end=0x1010)
        exit_b = MockBasicBlock(start=0x1010, end=0x1020)
        entry.outgoing_edges = [MockEdge(target=exit_b)]
        exit_b.outgoing_edges = []

        # LLIL instructions: SET_REG, CALL in first block; STORE, RET in second
        llil_instrs_1 = [
            MockLLILInstruction(LowLevelILOperation.LLIL_SET_REG),
            MockLLILInstruction(LowLevelILOperation.LLIL_CALL),
        ]
        llil_instrs_2 = [
            MockLLILInstruction(LowLevelILOperation.LLIL_STORE),
            MockLLILInstruction(LowLevelILOperation.LLIL_RET),
        ]

        # LLIL basic blocks map back to native blocks via source_block
        llil_bb1 = MockLLILBasicBlock(llil_instrs_1, source_block=entry)
        llil_bb2 = MockLLILBasicBlock(llil_instrs_2, source_block=exit_b)
        llil_func = MockLLILFunction([llil_bb1, llil_bb2])

        func = MockFunction(start=0x1000, basic_blocks=[entry, exit_b], llil=llil_func)
        result = CFGAnalysis(func, llil_function=llil_func).extract_function_cfg()

        assert result["llil_total_operations"] == 4
        assert result["call_count"] == 1
        assert result["prime_product_llil"] != 0

    def test_llil_none_gives_zero_fields(self):
        """Without LLIL, LLIL-dependent fields should be zero."""
        block = MockBasicBlock(start=0x1000, end=0x1010, outgoing_edges=[])
        func = MockFunction(start=0x1000, basic_blocks=[block])
        result = CFGAnalysis(func).extract_function_cfg()

        assert result["llil_total_operations"] == 0
        assert result["call_count"] == 0
        assert result["prime_product_llil"] == 0

    def test_bb_features_with_llil(self):
        """bb_features should reflect LLIL instruction categories when LLIL is available."""
        block = MockBasicBlock(start=0x1000, end=0x1010, outgoing_edges=[])

        llil_instrs = [
            MockLLILInstruction(LowLevelILOperation.LLIL_ADD),
            MockLLILInstruction(LowLevelILOperation.LLIL_LOAD),
            MockLLILInstruction(LowLevelILOperation.LLIL_CALL),
        ]
        llil_bb = MockLLILBasicBlock(llil_instrs, source_block=block)
        llil_func = MockLLILFunction([llil_bb])

        func = MockFunction(start=0x1000, basic_blocks=[block])
        result = CFGAnalysis(func, llil_function=llil_func).extract_function_cfg()

        feats = result["bb_features"]
        assert len(feats) == 1
        assert feats[0][0] == 3  # instruction count = 3
        # At least one non-zero category count (not all OTHER)
        category_counts = feats[0][1:7]
        assert sum(category_counts) > 0


# ============================================================================
# 9b. DisassemblyAnalysis
# ============================================================================


class TestDisassemblyAnalysisGetJson:
    def _make_analysis(self, instructions=None, basic_blocks=None):
        arch = Arch_x86()
        if instructions is None:
            instructions = [
                (
                    [
                        MockToken("push", InstructionTextTokenType.InstructionToken),
                        MockToken(" ", InstructionTextTokenType.TextToken),
                        MockToken("rbp", InstructionTextTokenType.RegisterToken),
                    ],
                    0x1000,
                ),
                (
                    [
                        MockToken("mov", InstructionTextTokenType.InstructionToken),
                        MockToken(" ", InstructionTextTokenType.TextToken),
                        MockToken("rsp", InstructionTextTokenType.RegisterToken),
                    ],
                    0x1003,
                ),
            ]
        if basic_blocks is None:
            basic_blocks = [MockBasicBlock(
                start=0x1000, end=0x1010,
                disassembly_text=[MockDisassemblyLine([MockToken("push rbp")])]
            )]

        func = MockFunction(
            name="test_func",
            start=0x1000,
            basic_blocks=basic_blocks,
            instructions=instructions,
            symbol=MockSymbol(symbol_type=SymbolType.FunctionSymbol, name="test_func"),
            stack_adjustment=MagicMock(value=-8),
            mlil=None,
        )
        bv = MockBinaryView()
        logger = MagicMock()
        return DisassemblyAnalysis(arch, func, bv, logger)

    def test_get_json_basic_structure(self):
        da = self._make_analysis()
        result, errors = da.get_json()
        expected_keys = [
            "disassembled_function_hash",
            "disassembled_function",
            "disassembled_function_no_addresses",
            "disassembled_function_name",
            "disassembled_function_address",
            "instructions_count",
            "function_type",
            "instructions_types",
            "control_flow_count",
            "memory_access_pattern",
            "register_usage",
            "data_references_count",
        ]
        for key in expected_keys:
            assert key in result, f"Missing key: {key}"

    def test_get_json_hash_deterministic(self):
        da = self._make_analysis()
        r1, _ = da.get_json()
        da2 = self._make_analysis()
        r2, _ = da2.get_json()
        assert r1["disassembled_function_hash"] == r2["disassembled_function_hash"]


class TestDisassemblyCollectInstructionTypes:
    def test_collect_instruction_types(self):
        arch = Arch_x86()
        instructions = [
            ([MockToken("MOV", InstructionTextTokenType.InstructionToken)], 0x1000),
            ([MockToken("ADD", InstructionTextTokenType.InstructionToken)], 0x1001),
            ([MockToken("MOV", InstructionTextTokenType.InstructionToken)], 0x1002),
        ]
        func = MockFunction(start=0x1000, instructions=instructions, symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        types = da.collect_instruction_types()
        assert "DATA_MOVEMENT" in types
        assert "ARITHMETIC" in types

    def test_collect_instruction_types_empty(self):
        arch = Arch_x86()
        func = MockFunction(start=0x1000, instructions=[], symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        types = da.collect_instruction_types()
        assert types == {}


class TestDisassemblyMemoryPatterns:
    def _make_memory_instruction(self, tokens):
        return ([t for t in tokens], 0x1000)

    def test_collect_memory_patterns_stack(self):
        arch = Arch_x86()
        tokens = [
            MockToken("[", InstructionTextTokenType.BeginMemoryOperandToken),
            MockToken("RSP", InstructionTextTokenType.RegisterToken),
            MockToken("+0x8", InstructionTextTokenType.TextToken),
            MockToken("]", InstructionTextTokenType.EndMemoryOperandToken),
        ]
        instructions = [self._make_memory_instruction(tokens)]
        func = MockFunction(start=0x1000, instructions=instructions, symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        patterns = da.collect_memory_patterns()
        assert "MEM_STACK" in patterns

    def test_collect_memory_patterns_direct(self):
        arch = Arch_x86()
        tokens = [
            MockToken("[", InstructionTextTokenType.BeginMemoryOperandToken),
            MockToken("0x402000", InstructionTextTokenType.TextToken),
            MockToken("]", InstructionTextTokenType.EndMemoryOperandToken),
        ]
        instructions = [self._make_memory_instruction(tokens)]
        func = MockFunction(start=0x1000, instructions=instructions, symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        patterns = da.collect_memory_patterns()
        assert "MEM_DIRECT" in patterns

    def test_collect_memory_patterns_scaled(self):
        arch = Arch_x86()
        tokens = [
            MockToken("[", InstructionTextTokenType.BeginMemoryOperandToken),
            MockToken("RAX+RCX*4", InstructionTextTokenType.TextToken),
            MockToken("]", InstructionTextTokenType.EndMemoryOperandToken),
        ]
        instructions = [self._make_memory_instruction(tokens)]
        func = MockFunction(start=0x1000, instructions=instructions, symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        patterns = da.collect_memory_patterns()
        assert "MEM_SCALED_INDEX" in patterns

    def test_collect_memory_patterns_base_offset(self):
        arch = Arch_x86()
        tokens = [
            MockToken("[", InstructionTextTokenType.BeginMemoryOperandToken),
            MockToken("RAX+0x10", InstructionTextTokenType.TextToken),
            MockToken("]", InstructionTextTokenType.EndMemoryOperandToken),
        ]
        instructions = [self._make_memory_instruction(tokens)]
        func = MockFunction(start=0x1000, instructions=instructions, symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        patterns = da.collect_memory_patterns()
        assert "MEM_BASE_OFFSET" in patterns


class TestDisassemblyRegisterUsage:
    def test_collect_register_usage_gpr(self):
        arch = Arch_x86()
        instructions = [
            ([MockToken("RAX", InstructionTextTokenType.RegisterToken)], 0x1000),
        ]
        func = MockFunction(start=0x1000, instructions=instructions, symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        regs = da.collect_register_usage()
        assert "GPR" in regs

    def test_collect_register_usage_simd(self):
        arch = Arch_x86()
        instructions = [
            ([MockToken("XMM0", InstructionTextTokenType.RegisterToken)], 0x1000),
        ]
        func = MockFunction(start=0x1000, instructions=instructions, symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        regs = da.collect_register_usage()
        assert "SIMD" in regs

    def test_collect_register_usage_fpu(self):
        arch = Arch_x86()
        instructions = [
            ([MockToken("ST0", InstructionTextTokenType.RegisterToken)], 0x1000),
        ]
        func = MockFunction(start=0x1000, instructions=instructions, symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        regs = da.collect_register_usage()
        assert "FPU" in regs


class TestDisassemblyMisc:
    def test_count_data_references(self):
        arch = Arch_x86()
        func = MockFunction(start=0x1000, instructions=[], symbol=MockSymbol(), mlil=None)
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        assert da.count_data_references() == 0

    def test_compute_max_block_size(self):
        arch = Arch_x86()
        blocks = [
            MockBasicBlock(disassembly_text=[MockDisassemblyLine([]) for _ in range(3)]),
            MockBasicBlock(disassembly_text=[MockDisassemblyLine([]) for _ in range(5)]),
        ]
        func = MockFunction(start=0x1000, basic_blocks=blocks, instructions=[], symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        assert da.compute_max_block_size() == 5

    def test_compute_num_calls(self):
        arch = Arch_x86()
        instructions = [
            ([MockToken("CALL", InstructionTextTokenType.InstructionToken)], 0x1000),
            ([MockToken("MOV", InstructionTextTokenType.InstructionToken)], 0x1005),
            ([MockToken("CALL", InstructionTextTokenType.InstructionToken)], 0x1010),
        ]
        func = MockFunction(start=0x1000, instructions=instructions, symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        assert da.compute_num_calls() == 2

    def test_estimate_stack_size_value(self):
        arch = Arch_x86()
        stack = MagicMock()
        stack.value = -16
        func = MockFunction(start=0x1000, instructions=[], symbol=MockSymbol(), stack_adjustment=stack)
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        assert da.estimate_stack_size() == -16

    def test_estimate_stack_size_int(self):
        arch = Arch_x86()
        func = MockFunction(start=0x1000, instructions=[], symbol=MockSymbol(), stack_adjustment=-8)
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        assert da.estimate_stack_size() == -8

    def test_normalize_opcode(self):
        arch = Arch_x86()
        func = MockFunction(start=0x1000, instructions=[], symbol=MockSymbol())
        da = DisassemblyAnalysis(arch, func, MockBinaryView(), MagicMock())
        assert da.normalize_opcode("mov") == "MOV"
        assert da.normalize_opcode("PUSH") == "PUSH"


# ============================================================================
# 9c. LowLevelAnalysis (basic tests with mocked LLIL)
# ============================================================================


class MockLLILInstruction:
    """Mock LLIL instruction for low_level.py tests."""
    def __init__(self, operation, operands=None, address=0):
        self.operation = operation
        self.operands = operands or []
        self.address = address

    def __str__(self):
        return f"LLIL_{self.operation}"


class MockLLILBasicBlock:
    def __init__(self, instructions, source_block=None):
        self._instructions = instructions
        self.source_block = source_block

    def __iter__(self):
        return iter(self._instructions)


class MockLLILFunction:
    def __init__(self, basic_blocks):
        self.basic_blocks = basic_blocks
        self._instructions = []
        for bb in basic_blocks:
            self._instructions.extend(bb._instructions)

    @property
    def instructions(self):
        return iter(self._instructions)

    @property
    def source_function(self):
        mock = MagicMock()
        mock.start = 0x1000
        return mock


class TestLowLevelAnalysisCountControlFlow:
    def test_count_control_flow_instructions(self):
        from redb.extractors.decompiler.bninja.analysis.low_level import LowLevelAnalysis
        instrs = [
            MockLLILInstruction(LowLevelILOperation.LLIL_IF),
            MockLLILInstruction(LowLevelILOperation.LLIL_SET_REG),
            MockLLILInstruction(LowLevelILOperation.LLIL_CALL),
            MockLLILInstruction(LowLevelILOperation.LLIL_GOTO),
        ]
        bb = MockLLILBasicBlock(instrs)
        llil_func = MockLLILFunction([bb])

        func = MockFunction(start=0x1000, llil=llil_func, symbol=MockSymbol())
        func.low_level_il = None
        bv = MockBinaryView()
        bv.arch = MagicMock()
        bv.arch.stack_pointer = "sp"
        la = LowLevelAnalysis(func, bv, MagicMock())
        assert la.count_control_flow_instructions() == 3  # IF, CALL, GOTO


class TestLowLevelAnalysisNumCalls:
    def test_compute_num_calls_llil(self):
        from redb.extractors.decompiler.bninja.analysis.low_level import LowLevelAnalysis
        instrs = [
            MockLLILInstruction(LowLevelILOperation.LLIL_CALL),
            MockLLILInstruction(LowLevelILOperation.LLIL_TAILCALL),
            MockLLILInstruction(LowLevelILOperation.LLIL_SET_REG),
        ]
        bb = MockLLILBasicBlock(instrs)
        llil_func = MockLLILFunction([bb])

        func = MockFunction(start=0x1000, llil=llil_func, symbol=MockSymbol())
        func.low_level_il = None
        bv = MockBinaryView()
        la = LowLevelAnalysis(func, bv, MagicMock())
        assert la.compute_num_calls() == 2


class TestLowLevelAnalysisCollectNormalization:
    def test_collect_low_level(self):
        from redb.extractors.decompiler.bninja.analysis.low_level import LowLevelAnalysis
        instrs = [
            MockLLILInstruction(LowLevelILOperation.LLIL_SET_REG, address=0x1000),
            MockLLILInstruction(LowLevelILOperation.LLIL_STORE, address=0x1004),
        ]
        bb = MockLLILBasicBlock(instrs)
        llil_func = MockLLILFunction([bb])

        func = MockFunction(start=0x1000, llil=llil_func, symbol=MockSymbol())
        func.low_level_il = None
        bv = MockBinaryView()
        la = LowLevelAnalysis(func, bv, MagicMock())
        result, _ = la._collect_low_level_and_with_addr()
        assert len(result) == 2
        # Each item is a list of operation ints
        assert isinstance(result[0], list)

    def test_collect_low_level_with_addr_offset_clamping(self):
        from redb.extractors.decompiler.bninja.analysis.low_level import LowLevelAnalysis
        instrs = [
            MockLLILInstruction(LowLevelILOperation.LLIL_SET_REG, address=0x0FFF),  # Before function start
        ]
        bb = MockLLILBasicBlock(instrs)
        llil_func = MockLLILFunction([bb])

        func = MockFunction(start=0x1000, llil=llil_func, symbol=MockSymbol())
        func.low_level_il = None
        bv = MockBinaryView()
        la = LowLevelAnalysis(func, bv, MagicMock())
        _, result = la._collect_low_level_and_with_addr()
        assert len(result) == 1
        offset, _ = result[0]
        assert offset == 0  # Clamped to 0