Kapil Devkota

11 papers B 3Journal 7Unranked 1
YearRankTypeTitle / Venue / Authors
2025 B conf
Decoding the Functional Interactome of Non-model Organisms with PHILHARMONIC.
RECOMB
Samuel Sledzieski, Charlotte Versavel, Rohit Singh, Faith Ocitti, Kapil Devkota, Lokender Kumar, Polina Shpilker, Liza Roger, Jinkyu Yang, Nastassja Lewinski, Hollie Putnam, Bonnie Berger, Judith Klein-Seetharaman, Lenore Cowen
2025 B conf
Learning a CoNCISE Language for Small-Molecule Binding.
RECOMB
Mert Erden, Kapil Devkota, Lia Varghese, Lenore Cowen, Rohit Singh
2024 J jnl
Approximate IsoRank for Scalable and Functionally Meaningful Cross-Species Alignments of Protein Interaction Networks.
J. Comput. Biol.
Kapil Devkota, Anselm Blumer, Xiaozhe Hu, Lenore Cowen
2024 B conf
Fast Approximate IsoRank for Scalable Global Alignment of Biological Networks.
RECOMB
Kapil Devkota, Anselm Blumer, Xiaozhe Hu, Lenore Cowen
2023 J jnl
TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions.
Bioinform.
Samuel Sledzieski, Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger
2022 J jnl
GLIDER: function prediction from GLIDE-based neighborhoods.
Bioinform.
Kapil Devkota, Henri Schmidt, Matthew Werenski, James M. Murphy, Mert Erden, Victor Arsenescu, Lenore J. Cowen
2022 — conf
Neighborhood embedding and re-ranking of disease genes with ADAGIO.
BCB
Mert Erden, Megan Gelement, Sarrah Hakimjee, Kyla Levin, Mary-Joy Sidhom, Kapil Devkota, Lenore J. Cowen
2022 J jnl
Topsy-Turvy: integrating a global view into sequence-based PPI prediction.
Bioinform.
Rohit Singh, Kapil Devkota, Samuel Sledzieski, Bonnie Berger, Lenore Cowen
2021 J jnl
Diffusion State Distances: Multitemporal Analysis, Fast Algorithms, and Applications to Biological Networks.
SIAM J. Math. Data Sci.
Lenore Cowen, Kapil Devkota, Xiaozhe Hu, James M. Murphy, Kaiyi Wu
2020 J jnl
Diffusion State Distances: Multitemporal Analysis, Fast Algorithms, and Applications to Biological Networks.
CoRR
Lenore Cowen, Kapil Devkota, Xiaozhe Hu, James M. Murphy, Kaiyi Wu
2020 J jnl
GLIDE: combining local methods and diffusion state embeddings to predict missing interactions in biological networks.
Bioinform.
Kapil Devkota, James M. Murphy, Lenore J. Cowen