Kang Ning

59 papers B 4C 1Journal 48Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
Discovery and optimization of antimicrobial peptides from extreme environments on global scale.
Briefings Bioinform.
Zixin Kang, Haohong Zhang, Kang Ning
2025 J jnl
PREDAC-FluB: predicting antigenic clusters of seasonal influenza B viruses with protein language model embedding based convolutional neural network.
Briefings Bioinform.
Wenping Xie, Jingze Liu, Chuan Wang, Jiangyuan Wang, Wenjie Han, Yousong Peng, Xiangjun Du, Jing Meng, Kang Ning, Taijiao Jiang
2025 J jnl
Quantifying antibiotic resistome risks across environmental niches: the L-ARRAP for long-read metagenomic profiling.
Briefings Bioinform.
Yongxin Li, Yue Gao, Xiaohui Liu, Yujie Mao, Mingchao Wang, Yunyi Qin, Caili Zhang, Qingru Chen, Kang Ning, Zhi Wang, Maozhen Han
2025 J jnl
Techniques for learning and transferring knowledge for microbiome-based classification and prediction: review and assessment.
Briefings Bioinform.
Jin Han, Haohong Zhang, Kang Ning
2024 J jnl
Hidden Links Between Skin Microbiome and Skin Imaging Phenome.
Genom. Proteom. Bioinform.
Mingyue Cheng, Hong Zhou, Haobo Zhang, Xinchao Zhang, Shuting Zhang, Hong Bai, Yugo Zha, Dan Luo, Dan Chen, Siyuan Chen, Kang Ning, Wei Liu
2023 J jnl
Artificial intelligence-enabled microbiome-based diagnosis models for a broad spectrum of cancer types.
Briefings Bioinform.
Wei Xu, Teng Wang, Nan Wang, Haohong Zhang, Yuguo Zha, Lei Ji, Yuwen Chu, Kang Ning
2023 J jnl
ContactLib-ATT: A Structure-Based Search Engine for Homologous Proteins.
IEEE ACM Trans. Comput. Biol. Bioinform.
Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning, Xuefeng Cui
2023 J jnl
Tracing human life trajectory using gut microbial communities by context-aware deep learning.
Briefings Bioinform.
Haohong Zhang, Hui Chong, Qingyang Yu, Yuguo Zha, Mingyue Cheng, Kang Ning
2022 J jnl
EXPERT: transfer learning-enabled context-aware microbial community classification.
Briefings Bioinform.
Hui Chong, Yuguo Zha, Qingyang Yu, Mingyue Cheng, Guangzhou Xiong, Nan Wang, Xinhe Huang, Shijuan Huang, Chuqing Sun, Sicheng Wu, Wei-Hua Chen, Luís Pedro Coelho, Kang Ning
2022 J jnl
Microbial Dark Matter: from Discovery to Applications.
Genom. Proteom. Bioinform.
Yuguo Zha, Hui Chong, Pengshuo Yang, Kang Ning
2022 J jnl
Ontology-aware neural network: a general framework for pattern mining from microbiome data.
Briefings Bioinform.
Yuguo Zha, Kang Ning
2021 — conf
Hydrogen bonds meet self-attention: all you need for protein structure embedding.
BIBM
Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning, Xuefeng Cui
2021 J jnl
Meta-Prism: Ultra-fast and highly accurate microbial community structure search utilizing dual indexing and parallel computation.
Briefings Bioinform.
Mo Zhu, Kai Kang, Kang Ning
2021 J jnl
Reliable and Interpretable Mortality Prediction With Strong Foresight in COVID-19 Patients: An International Study From China and Germany.
Frontiers Artif. Intell.
Tao Bai, Xue Zhu, Xiang Zhou, Denise Grathwohl, Pengshuo Yang, Yuguo Zha, Yu Jin, Hui Chong, Qingyang Yu, Nora Isberner, Dongke Wang, Lei Zhang, K. Martin Kortüm, Jun Song, Leo Rasche, Hermann Einsele, Kang Ning, Xiaohua Hou
2020 J jnl
Classification of the Gut Microbiota of Patients in Intensive Care Units During Development of Sepsis and Septic Shock.
Genom. Proteom. Bioinform.
Wang-Lin Liu, Mingyue Cheng, Jinman Li, Peng Zhang, Hang Fan, Qinghe Hu, Maozhen Han, Longxiang Su, Huaiwu He, Yigang Tong, Kang Ning, Yun Long
2019 J jnl
Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake.
Genom. Proteom. Bioinform.
Maozhen Han, Melissa Dsouza, Chunyu Zhou, Hongjun Li, Junqian Zhang, Chaoyun Chen, Qi Yao, Chaofang Zhong, Hao Zhou, Jack A. Gilbert, Zhi Wang, Kang Ning
2019 J jnl
Meta-network: optimized species-species network analysis for microbial communities.
BMC Genom.
Pengshuo Yang, Shaojun Yu, Lin Cheng, Kang Ning
2019 J jnl
Stereotypes About Enterotype: the Old and New Ideas.
Genom. Proteom. Bioinform.
Mingyue Cheng, Kang Ning
2019 J jnl
Strain-GeMS: optimized subspecies identification from microbiome data based on accurate variant modeling.
Bioinform.
Chongyang Tan, Wei Cui, Xinping Cui, Kang Ning
2019 J jnl
The Fast Track for Microbiome Research.
Genom. Proteom. Bioinform.
Kang Ning, Yigang Tong
2016 J jnl
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
Bioinform.
Chao Wang, Haicang Zhang, Wei-Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning, Shiwei Sun, Shuai Cheng Li, Dongbo Bu
2016 J jnl
MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data.
Bioinform.
Gabriel H. Murillo, Na You, Xiaoquan Su, Wei Cui, Muredach P. Reilly, Mingyao Li, Kang Ning, Xinping Cui
2015 J jnl
Application of Meta-Mesh on the analysis of microbial communities from human associated-habitats.
Quant. Biol.
Xiaoquan Su, Xiaojun Wang, Gongchao Jing, Shi Huang, Jian Xu, Kang Ning
2015 J jnl
Condensing Raman spectrum for single-cell phenotype analysis.
BMC Bioinform.
Shiwei Sun, Xuetao Wang, Xin Gao, Lihui Ren, Xiaoquan Su, Dongbo Bu, Kang Ning
2015 J jnl
The Tara Oceans Project: New Opportunities and Greater Challenges Ahead.
Genom. Proteom. Bioinform.
Houjin Zhang, Kang Ning
2014 J jnl
DNA Extraction Protocol for Biological Ingredient Analysis of Liuwei Dihuang Wan.
Genom. Proteom. Bioinform.
Xinwei Cheng, Xiaohua Chen, Xiaoquan Su, Huanxin Zhao, Maozhen Han, Cunpei Bo, Jian Xu, Hong Bai, Kang Ning
2014 J jnl
GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU.
Bioinform.
Xiaoquan Su, Xuetao Wang, Gongchao Jing, Kang Ning
2014 J jnl
Meta-QC-Chain: Comprehensive and Fast Quality Control Method for Metagenomic Data.
Genom. Proteom. Bioinform.
Qian Zhou, Xiaoquan Su, Gongchao Jing, Kang Ning
2014 J jnl
Microbial community pattern detection in human body habitats via ensemble clustering framework.
BMC Syst. Biol.
Peng Yang, Xiaoquan Su, Le Ou-Yang, Hon Nian Chua, Xiaoli Li, Kang Ning
2014 J jnl
Microbial community pattern detection in human body habitats via ensemble clustering framework.
CoRR
Peng Yang, Xiaoquan Su, Le Ou-Yang, Hon Nian Chua, Xiaoli Li, Kang Ning
2013 J jnl
Systematic assessment of the expected length, variance and distribution of Longest Common Subsequences.
CoRR
Kang Ning, Kwok Pui Choi
2012 — conf
A machine learning framework of functional biomarker discovery for different microbial communities based on metagenomic data.
ISB
Wei Fang, Xingzhi Chang, Xiaoquan Su, Jian Xu, Deli Zhang, Kang Ning
2012 J jnl
Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.
Bioinform.
Xiaoquan Su, Jian Xu, Kang Ning
2012 J jnl
Parallel-META: efficient metagenomic data analysis based on high-performance computation.
BMC Syst. Biol.
Xiaoquan Su, Jian Xu, Kang Ning
2012 J jnl
SNP calling using genotype model selection on high-throughput sequencing data.
Bioinform.
Na You, Gabriel H. Murillo, Xiaoquan Su, Xiaowei Zeng, Jian Xu, Kang Ning, Shoudong Zhang, Jiankang Zhu, Xinping Cui
2011 — conf
An Open-source Collaboration Environment for Metagenomics Research.
eScience
Xiaoquan Su, Yongzheng Ma, Hongwei Yang, Xingzhi Chang, Kai Nan, Jian Xu, Kang Ning
2011 J jnl
Analysis of the relationships among Longest Common Subsequences, Shortest Common Supersequences and patterns and its application on pattern discovery in biological sequences.
Int. J. Data Min. Bioinform.
Kang Ning, Hoong Kee Ng, Hon Wai Leong
2011 J jnl
The multiple sequence sets: problem and heuristic algorithms.
J. Comb. Optim.
Kang Ning, Hon Wai Leong
2010 J jnl
Deposition and extension approach to find longest common subsequence for thousands of long sequences.
Comput. Biol. Chem.
Kang Ning
2010 J jnl
Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology.
BMC Bioinform.
Kang Ning, Hoong Kee Ng, Sriganesh Srihari, Hon Wai Leong, Alexey I. Nesvizhskii
2010 J jnl
MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure.
BMC Bioinform.
Sriganesh Srihari, Kang Ning, Hon Wai Leong
2010 J jnl
Multiple oligo nucleotide arrays: Methods to reduce manufacture time and cost.
CoRR
Kang Ning
2010 J jnl
The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment.
BMC Bioinform.
Kang Ning, Alexey I. Nesvizhskii
2009 J jnl
A Deposition and Post Processing Approach for the Longest Common Subsequence Problem
CoRR
Kang Ning
2009 J jnl
A Pseudo DNA Cryptography Method
CoRR
Kang Ning
2009 J jnl
Analysis of the Relationships among Longest Common Subsequences, Shortest Common Supersequences and Patterns and its application on Pattern Discovery in Biological Sequences
CoRR
Kang Ning, Hoong Kee Ng, Hon Wai Leong
2009 J jnl
The Distribution and Deposition Algorithm for Multiple Sequences Sets
CoRR
Kang Ning, Hon Wai Leong
2008 B conf
Detecting hubs and quasi cliques in scale-free networks.
ICPR
Sriganesh Srihari, Hoong Kee Ng, Kang Ning, Hon Wai Leong
2008 J jnl
On Preprocessing and Antisymmetry in
J. Bioinform. Comput. Biol.
Kang Ning, Nan Ye, Hon Wai Leong
2008 J jnl
Using Indirect protein-protein Interactions for protein Complex Prediction.
J. Bioinform. Comput. Biol.
Hon Nian Chua, Kang Ning, Wing-Kin Sung, Hon Wai Leong, Limsoon Wong
2007 B conf
A New Approach for Similarity Queries of Biological Sequences in Databases.
PAKDD
Hoong Kee Ng, Kang Ning, Hon Wai Leong
2007 B conf
De Novo Peptide Sequencing for Mass Spectra Based on Multi-Charge Strong Tags.
APBC
Kang Ning, Ket Fah Chong, Hon Wai Leong
2006 — conf
A Database Search Algorithm for Identification of Peptides with Multiple Charges Using Tandem Mass Spectrometry.
BioDM
Kang Ning, Ket Fah Chong, Hon Wai Leong
2006 — conf
Automated Identification of Protein Classification and Detection of Annotation Errors in Protein Databases Using Statistical Approaches.
KDLL
Kang Ning, Hon Nian Chua
2006 B conf
Characterization of Multi-Charge Mass Spectra for Peptide Sequencing.
APBC
Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner
2006 C conf
Finding Patterns in Biological Sequences by Longest Common Subsequencesand Shortest Common Supersequences.
BIBE
Kang Ning, Hoong Kee Ng, Hon Wai Leong
2006 J jnl
Modeling and Characterization of Multi-charge Mass Spectra for Peptide Sequencing.
J. Bioinform. Comput. Biol.
Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner
2006 — conf
Towards a Better Solution to the Shortest Common Supersequence Problem: A Post.
IMSCCS (1)
Kang Ning, Hon Wai Leong
2006 J jnl
Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm.
BMC Bioinform.
Kang Ning, Hon Wai Leong