Kaname Kojima

23 papers A 1C 1Journal 18Unranked 3
YearRankTypeTitle / Venue / Authors
2020 J jnl
PLoS Comput. Biol.
Kaname Kojima, Shu Tadaka, Fumiki Katsuoka, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita
2018 J jnl
IEEE Trans. Signal Process.
Takanori Hasegawa, Kaname Kojima, Yosuke Kawai, Masao Nagasaki
2016 J jnl
BMC Genom.
Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yosuke Kawai, Masao Nagasaki
2015 J jnl
BMC Bioinform.
Takahiro Mimori, Naoki Nariai, Kaname Kojima, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Masao Nagasaki
2015 J jnl
BMC Genom.
Naoki Nariai, Kaname Kojima, Sakae Saito, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Jun Yasuda, Masao Nagasaki
2014 conf
AlCoB
Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki
2014 conf
AlCoB
Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya, Masao Nagasaki
2013 J jnl
Bioinform.
Kaname Kojima, Naoki Nariai, Takahiro Mimori, Mamoru Takahashi, Yumi Yamaguchi-Kabata, Yukuto Sato, Masao Nagasaki
2013 J jnl
Bioinform.
Naoki Nariai, Osamu Hirose, Kaname Kojima, Masao Nagasaki
2013 J jnl
BMC Syst. Biol.
Takahiro Mimori, Naoki Nariai, Kaname Kojima, Mamoru Takahashi, Akira Ono, Yukuto Sato, Yumi Yamaguchi-Kabata, Masao Nagasaki
2012 J jnl
BMC Syst. Biol.
André Fujita, Patricia Severino, Kaname Kojima, João Ricardo Sato, Alexandre Galvão Patriota, Satoru Miyano
2012 J jnl
BMC Genom.
Kaname Kojima, Seiya Imoto, Rui Yamaguchi, André Fujita, Mai Yamauchi, Noriko Gotoh, Satoru Miyano
2010 J jnl
Bioinform.
André Fujita, Kaname Kojima, Alexandre Galvão Patriota, João Ricardo Sato, Patricia Severino, Satoru Miyano
2010 J jnl
BMC Bioinform.
Kaname Kojima, Masao Nagasaki, Satoru Miyano
2010 J jnl
Silico Biol.
Masao Nagasaki, Ayumu Saito, Euna Jeong, Chen Li, Kaname Kojima, Emi Ikeda, Satoru Miyano
2010 J jnl
J. Bioinform. Comput. Biol.
André Fujita, João Ricardo Sato, Kaname Kojima, Luciana Rodrigues Gomes, Masao Nagasaki, Mari Cleide Sogayar, Satoru Miyano
2010 C conf
BIBE
Tomoya Higashigaki, Kaname Kojima, Rui Yamaguchi, Masato Inoue, Seiya Imoto, Satoru Miyano
2010 J jnl
J. Mach. Learn. Res.
Kaname Kojima, Eric Perrier, Seiya Imoto, Satoru Miyano
2010 conf
JSAI-isAI Workshops
Seiya Imoto, Kaname Kojima, Eric Perrier, Yoshinori Tamada, Satoru Miyano
2009 J jnl
BMC Bioinform.
Tatsunori B. Hashimoto, Masao Nagasaki, Kaname Kojima, Satoru Miyano
2008 J jnl
Bioinform.
Kaname Kojima, Masao Nagasaki, Satoru Miyano
2007 J jnl
BMC Bioinform.
Kaname Kojima, Masao Nagasaki, Euna Jeong, Mitsuru Kato, Satoru Miyano
2006 A conf
INTERSPEECH
Koji Iwano, Kaname Kojima, Sadaoki Furui
redb/extractors/js_extractors/js_deobfuscator.py
← Index redb/extractors/js_extractors/js_deobfuscator.py python
"""Subprocess-driven JavaScript deobfuscator with jsbeautifier fallback.

Owns the heavy lifting that was previously embedded inside
`JSDeobfuscationExtractor` (`_run_deobfuscator` + `_try_jsbeautifier`). Exposed
as a single module-level entry point `deobfuscate(source, log)` so it can be
called from `JSContext.deobfuscated` (cached per sample) without dragging
extractor state through the call.

Configuration (env vars):
    JS_DEOBFUSCATOR_PATH    Path or name of the external tool (default: webcrack).
    JS_DEOBFUSCATE_TIMEOUT  Seconds before the external tool is killed
                            (process-group SIGTERM, then SIGKILL). Default: 60.

If the external tool produces non-empty output and exits 0, that wins. Otherwise
the source is run through jsbeautifier (which only normalises formatting, but
already exposes strings hidden by minification). If neither path produces
output, returns (None, None).

`FileNotFoundError` for the external tool is treated as routine — the analysis
server is either provisioned with the tool or it isn't — and demoted to a
debug-level log.
"""

import os
import signal
import subprocess
import tempfile
from typing import Optional, Tuple

DEFAULT_DEOBFUSCATOR = "webcrack"
DEFAULT_TIMEOUT_SECS = 60


def _run_external(
    source: str, deobfuscator_path: str, timeout: int, log
) -> Tuple[Optional[str], int]:
    """Run the configured external deobfuscator over `source` and capture stdout.

    Returns (text, returncode). `text` is `None` and `returncode` is `-1` when
    the binary is missing, the run timed out, or any other unexpected failure
    occurred. Missing-binary is logged at debug; timeouts and unexpected errors
    surface at warning/error.
    """
    try:
        with tempfile.NamedTemporaryFile(
            suffix=".js", mode="w", delete=False, encoding="utf-8"
        ) as tmp:
            tmp.write(source)
            tmp_path = tmp.name

        try:
            process = subprocess.Popen(
                [deobfuscator_path, tmp_path],
                stdout=subprocess.PIPE,
                stderr=subprocess.PIPE,
                preexec_fn=os.setsid,
            )

            try:
                stdout, _ = process.communicate(timeout=timeout)
                return stdout.decode("utf-8", errors="replace"), process.returncode
            except subprocess.TimeoutExpired:
                # Kill the entire process group so spawned helpers (e.g. node
                # subprocesses webcrack itself launches) get cleaned up too.
                try:
                    os.killpg(os.getpgid(process.pid), signal.SIGTERM)
                    process.wait(timeout=5)
                except Exception:
                    try:
                        os.killpg(os.getpgid(process.pid), signal.SIGKILL)
                    except Exception:
                        pass
                log.warning(f"Deobfuscation timed out after {timeout}s")
                return None, -1
        finally:
            try:
                os.unlink(tmp_path)
            except Exception:
                pass
    except FileNotFoundError:
        log.debug(f"Deobfuscator binary not found at {deobfuscator_path}")
        return None, -1
    except Exception as e:
        log.error(f"Error running deobfuscator: {e}")
        return None, -1


def _try_jsbeautifier(source: str, log) -> Tuple[Optional[str], Optional[str]]:
    """Fallback path: format the source with jsbeautifier. Returns
    `(text, "jsbeautifier")` or `(None, None)` if jsbeautifier isn't installed
    or the call raised."""
    try:
        import jsbeautifier
        opts = jsbeautifier.default_options()
        opts.indent_size = 2
        return jsbeautifier.beautify(source, opts), "jsbeautifier"
    except ImportError:
        log.debug("jsbeautifier not available")
        return None, None
    except Exception as e:
        log.warning(f"jsbeautifier failed: {e}")
        return None, None


def deobfuscate(source: str, log) -> Tuple[Optional[str], Optional[str]]:
    """Run the configured external deobfuscator, falling back to jsbeautifier.

    Returns `(text, normalizer_used)` on success, or `(None, None)` when neither
    path produced non-empty output. `normalizer_used` is the basename of the
    external tool (e.g. `"webcrack"`) or the literal `"jsbeautifier"`.
    """
    if not source:
        return None, None

    deobfuscator_path = os.getenv("JS_DEOBFUSCATOR_PATH", DEFAULT_DEOBFUSCATOR)
    timeout = int(os.getenv("JS_DEOBFUSCATE_TIMEOUT", str(DEFAULT_TIMEOUT_SECS)))

    text, returncode = _run_external(source, deobfuscator_path, timeout, log)
    if text and returncode == 0 and text.strip():
        return text, os.path.basename(deobfuscator_path)

    return _try_jsbeautifier(source, log)