Kamal Al-Nasr - RankMe

28 papers Journal 11Unranked 17

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Enhancing Protein Side Chain Packing Using Rotamer Clustering and Machine Learning. ICCABS Mohammed Alamri, Mohammad Al Sallal, Kamal Al-Nasr, Muhammad Akbar, Ahmad Jad Allah
2024	—	`conf`	Deep Learning Approach to Identify Protein's Secondary Structure Elements. ISBRA (1) Mohammad Bataineh, Kamal Al-Nasr, Richard Mu, Mohammed Alamri
2022	J	`jnl`	LPTD: a novel linear programming-based topology determination method for cryo-EM maps. Bioinform. Bahareh Behkamal, Mahmoud Naghibzadeh, Andrea Pagnani, Mohammad Reza Saberi, Kamal Al-Nasr
2021	—	`conf`	Assignment of Protein Secondary Structure Elements from Cα Backbone Trace: An Ensemble of Machine Learning Approaches. BIBM Kamal Al-Nasr, Ali Sekmen
2021	—	`conf`	Deep Learning for Assignment of Protein Secondary Structure Elements from Cɑ Coordinates. BIBM Kamal Al-Nasr, Ali Sekmen, Bahadir Bilgin, Christopher Jones, Ahmet Bugra Koku
2021	—	`conf`	Subspace Modeling for Classification of Protein Secondary Structure Elements from Cα Trace. BIBM Ali Sekmen, Kamal Al-Nasr, Christopher Jones
2020	J	`jnl`	A hidden Markov model-based approach to reconstructing double minute chromosome amplicons. Int. J. Comput. Biol. Drug Des. Ruslan T. Mardugalliamov, Kamal Al-Nasr, Matthew Hayes
2020	J	`jnl`	Forecasting the Growth of Structures from NMR and X-Ray Crystallography Experiments Released Per Year. J. Inf. Knowl. Manag. Kamal Al-Nasr, Qasem Abu Al-Haija
2020	—	`conf`	Machine Learning Approach to Assign Protein Secondary Structure Elements from Cα Trace. BIBM Mohammad Al Sallal, Wei Chen, Kamal Al-Nasr
2019	—	`conf`	Forecasting Model for the Annual Growth of Cryogenic Electron Microscopy Data. ICCABS Qasem Abu Al-Haija, Kamal Al-Nasr
2019	—	`conf`	Supervised Regression Study for Electron Microscopy Data. BIBM Qasem Abu Al-Haija, Kamal Al-Nasr
2017	J	`jnl`	An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images. IEEE ACM Trans. Comput. Biol. Bioinform. Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Stephanie Zeil, Kamal Al-Nasr, Jing He
2017	—	`conf`	Geometry Analysis for Protein Secondary Structures Matching Problem. BCB Kamal Al-Nasr, Feras Yousef, Christopher Jones, Ruba Jebril
2016	—	`conf`	An efficient method for validating protein models using electron microscopy data. BIBM Kamal Al-Nasr, Christopher Jones, Bashar Aboona, Abdulrahman Alanazi
2016	J	`jnl`	Constrained cyclic coordinate descent for cryo-EM images at medium resolutions: beyond the protein loop closure problem. Robotica Kamal Al-Nasr, Jing He
2015	—	`conf`	Deriving Protein Backbone Using Traces Extracted from Density Maps at Medium Resolutions. ISBRA Kamal Al-Nasr, Jing He
2014	—	`conf`	Construction of protein backbone pieces using segment-based FBCCD and Cryo-EM skeleton. BCB Kamal Al-Nasr, Jing He
2014	J	`jnl`	Solving the Secondary Structure MatchingProblem in Cryo-EM De Novo ModelingUsing a Constrained $K$-Shortest Path Graph Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Lin Chen, Jing He
2013	—	`conf`	A Constrained K-shortest Path Algorithm to Rank the Topologies of the Protein Secondary Structure Elements Detected in CryoEM Volume Maps. BCB Kamal Al-Nasr, Lin Chen, Desh Ranjan, Mohammad Zubair, Dong Si, Jing He
2013	—	`conf`	A Graph Approach to Bridge the Gaps in Volumetric Electron Cryo-microscopy Skeletons. ISBRA Kamal Al-Nasr, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge
2013	J	`jnl`	Intensity-Based Skeletonization of CryoEM Gray-Scale Images Using a True Segmentation-Free Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. Kamal Al-Nasr, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, Jing He
2012	—	`conf`	Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions. BCB Kamal Al-Nasr, Lin Chen, Dong Si, Desh Ranjan, Mohammad Zubair, Jing He
2012	—	`conf`	CryoEM skeleton length estimation using a decimated curve. BIBM Workshops Andrew McKnight, Kamal Al-Nasr, Dong Si, Andrey N. Chernikov, Nikos Chrisochoides, Jing He
2012	J	`jnl`	Improved Efficiency in Cryo-EM Secondary Structure Topology Determination from Inaccurate Data. J. Bioinform. Comput. Biol. Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
2011	—	`conf`	A Constraint Dynamic Graph Approach to Identify the Secondary Structure Topology from cryoEM Density Data in Presence of Errors. BIBM Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
2011	J	`jnl`	Ranking Valid Topologies of the Secondary Structure Elements Using a Constraint Graph. J. Bioinform. Comput. Biol. Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
2010	J	`jnl`	Structure prediction for the helical skeletons detected from the low resolution protein density map. BMC Bioinform. Kamal Al-Nasr, Weitao Sun, Jing He
2009	J	`jnl`	An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent. Int. J. Data Min. Bioinform. Kamal Al-Nasr, Jing He