Kalpana Raja - RankMe

25 papers Misc 2Journal 18Unranked 3

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	AI-Driven Drug Repurposing through miRNA-mRNA Relation. CoRR Sharanya Manoharan, Balu Bhasuran, Oviya Ramalakshmi Iyyappan, Mohamed Saleem Abdul Shukkoor, Malathi Sellapan, Kalpana Raja
2025	J	`jnl`	SemNovel - A new approach to detecting semantic novelty of biomedical publications using embeddings of large language models. J. Biomed. Informatics Xueqing Peng, Yutong Xie, Huan He, Brian D. Ondov, Kalpana Raja, Qijia Liu, Qiaozhu Mei, Hua Xu
2024	J	`jnl`	Advancing entity recognition in biomedicine via instruction tuning of large language models. Bioinform. Vipina Kuttichi Keloth, Yan Hu, Qianqian Xie, Xueqing Peng, Yan Wang, Andrew Zheng, Melih Selek, Kalpana Raja, Chih-Hsuan Wei, Qiao Jin, Zhiyong Lu, Qingyu Chen, Hua Xu
2024	—	`conf`	Predicting Protein-Protein Interactions Using Self-Attention-Based Deep Neural Networks and FastText Embeddings. ICCCNT I. R. Oviya, N. Shanmukha Sravya, Kalpana Raja
2023	J	`jnl`	Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations. CoRR Qingyu Chen, Jingcheng Du, Yan Hu, Vipina Kuttichi Keloth, Xueqing Peng, Kalpana Raja, Rui Zhang, Zhiyong Lu, Hua Xu
2023	J	`jnl`	Representing and utilizing clinical textual data for real world studies: An OHDSI approach. J. Biomed. Informatics Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu
2023	J	`jnl`	Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models. BMC Bioinform. Robert J. Millikin, Kalpana Raja, John W. Steill, Cannon Lock, Xuancheng Tu, Ian Ross, Lam C. Tsoi, Finn Kuusisto, Zijian Ni, Miron Livny, Brian Bockelman, James A. Thomson, Ron M. Stewart
2023	J	`jnl`	Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach. Bioinform. Yan Hu, Vipina Kuttichi Keloth, Kalpana Raja, Yong Chen, Hua Xu
2021	J	`jnl`	Advancement in predicting interactions between drugs used to treat psoriasis and its comorbidities by integrating molecular and clinical resources. J. Am. Medical Informatics Assoc. Matthew T. Patrick, Redina Bardhi, Kalpana Raja, Kevin He, Lam C. Tsoi
2020	—	`ch.`	Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol. Protein-Protein Interaction Networks Kalpana Raja, Jeyakumar Natarajan, Finn Kuusisto, John W. Steill, Ian Ross, James A. Thomson, Ron M. Stewart
2018	J	`jnl`	Discovery of novel inhibitors targeting movement protein for controlling the transmission of banana bunchy top virus infection in plantain by structure-based virtual screening. Int. J. Bioinform. Res. Appl. Archana Prabahar, Subashini Swaminathan, Kalpana Raja, Srividhya Vellingiri, Ramalingam Jegadeesan, Bharathi Nathan
2018	J	`jnl`	Mining protein phosphorylation information from biomedical literature using NLP parsing and Support Vector Machines. Comput. Methods Programs Biomed. Kalpana Raja, Jeyakumar Natarajan
2016	J	`jnl`	A Hybrid Citation Retrieval Algorithm for Evidence-based Clinical Knowledge Summarization: Combining Concept Extraction, Vector Similarity and Query Expansion for High Precision. CoRR Kalpana Raja, Andrew J. Sauer, Ravi Prakash Garg, Melanie R. Klerer, Siddhartha R. Jonnalagadda
2016	J	`jnl`	CRTS: A type system for representing clinical recommendations. CoRR Ravi Prakash Garg, Kalpana Raja, Siddhartha R. Jonnalagadda
2016	J	`jnl`	Classification of clinically useful sentences in clinical evidence resources. J. Biomed. Informatics Mohammad Amin Morid, Marcelo Fiszman, Kalpana Raja, Siddhartha Jonnalagadda, Guilherme Del Fiol
2016	—	`conf`	Towards Evidence-Based Precision Medicine: Extracting Population Information from Biomedical Text using Binary Classifiers and Syntactic Patterns. CRI Kalpana Raja, Naman Dasot, Pawan Goyal, Siddhartha R. Jonnalagadda
2015	J	`jnl`	Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge. J. Biomed. Informatics James Cormack, Chinmoy Nath, David Milward, Kalpana Raja, Siddhartha R. Jonnalagadda
2015	Misc	`conf`	Automated Citation Retrieval System for Clinical Knowledge Management. AMIA Kalpana Raja, Andrew J. Sauer, Melanie R. Klerer, Siddhartha R. Jonnalagadda
2015	Misc	`conf`	Classification of Clinically Useful Sentences in MEDLINE. AMIA Mohammad Amin Morid, Siddhartha R. Jonnalagadda, Marcelo Fiszman, Kalpana Raja, Guilherme Del Fiol
2015	—	`conf`	Concept based Information Retrieval for Clinical Case Summaries. TREC Jakob Stöber, Bret S. E. Heale, Kelley Fulghum, Guilherme Del Fiol, Heejun Kim, Kalpana Raja, Siddhartha Jonnalagadda
2015	—	`ch.`	Natural Language Processing and Data Mining for Clinical Text. Healthcare Data Analytics Kalpana Raja, Siddhartha Jonnalagadda
2014	J	`jnl`	A hybrid named entity tagger for tagging human proteins/genes. Int. J. Data Min. Bioinform. Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan
2014	J	`jnl`	ProNormz - An integrated approach for human proteins and protein kinases normalization. J. Biomed. Informatics Suresh Subramani, Kalpana Raja, Jeyakumar Natarajan
2013	J	`jnl`	An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database J. Biol. Databases Curation Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin G. Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu
2013	J	`jnl`	PPInterFinder - a mining tool for extracting causal relations on human proteins from literature. Database J. Biol. Databases Curation Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan