Kalle Karhu

12 papers B 2Misc 2Journal 6Unranked 1
YearRankTypeTitle / Venue / Authors
2017 J jnl
A Graph-Theoretical Approach for Motif Discovery in Protein Sequences.
IEEE ACM Trans. Comput. Biol. Bioinform.
Elena Czeizler, Tommi Hirvola, Kalle Karhu
2017 J jnl
Document retrieval on repetitive string collections.
Inf. Retr. J.
Travis Gagie, Aleksi Hartikainen, Kalle Karhu, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén
2017 J jnl
The impact of manual threshold selection in medical additive manufacturing.
Int. J. Comput. Assist. Radiol. Surg.
Maureen van Eijnatten, Juha Koivisto, Kalle Karhu, Tymour Forouzanfar, Jan Wolff
2016 J jnl
Document Retrieval on Repetitive String Collections.
CoRR
Travis Gagie, Aleksi Hartikainen, Kalle Karhu, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén
2014 J jnl
Multi-pattern matching with bidirectional indexes.
J. Discrete Algorithms
Simon Gog, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Niko Välimäki
2013 B conf
Document Listing on Repetitive Collections.
CPM
Travis Gagie, Kalle Karhu, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén
2013 — —
String Searching Methods for Bioinformatics ; Merkkijonohaun Menetelmät Bioinformatiikassa.
Kalle Karhu
2012 B conf
Indexed Multi-pattern Matching.
LATIN
Travis Gagie, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Leena Salmela, Jorma Tarhio
2012 Misc conf
Multi-pattern Matching with Bidirectional Indexes.
COCOON
Simon Gog, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Niko Välimäki
2011 — conf
GAST, a Genomic Alignment Search Tool.
BIOINFORMATICS
Kalle Karhu, Juho Mäkinen, Jussi Rautio, Jorma Tarhio, Hugh Salamon
2011 Misc conf
Improving Exact Search of Multiple Patterns From a Compressed Suffix Array.
PSC
Kalle Karhu
2010 J jnl
Pattern Kits
CoRR
Travis Gagie, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Leena Salmela