Kai-Yao Huang

32 papers Journal 32
YearRankTypeTitle / Venue / Authors
2022 J jnl
iDVIP: identification and characterization of viral integrase inhibitory peptides.
Briefings Bioinform.
Kai-Yao Huang, Hui-Ju Kao, Tzu-Hsiang Weng, Chia-Hung Chen, Shun-Long Weng
2021 J jnl
UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase-substrate interactions.
Database J. Biol. Databases Curation
Zhongyan Li, Siyu Chen, Jhih-Hua Jhong, Yuxuan Pang, Kai-Yao Huang, Shangfu Li, Tzong-Yi Lee
2020 J jnl
Incorporating deep learning and multi-omics autoencoding for analysis of lung adenocarcinoma prognostication.
Comput. Biol. Chem.
Tzong-Yi Lee, Kai-Yao Huang, Cheng-Hsiang Chuang, Cheng-Yang Lee, Tzu-Hao Chang
2020 J jnl
SuccSite: Incorporating Amino Acid Composition and Informative
Genom. Proteom. Bioinform.
Hui-Ju Kao, Van-Nui Nguyen, Kai-Yao Huang, Wen-Chi Chang, Tzong-Yi Lee
2020 J jnl
iDPGK: characterization and identification of lysine phosphoglycerylation sites based on sequence-based features.
BMC Bioinform.
Kai-Yao Huang, Fang-Yu Hung, Hui-Ju Kao, Hui-Hsuan Lau, Shun-Long Weng
2020 J jnl
miRTarBase 2020: updates to the experimentally validated microRNA?target interaction database.
Nucleic Acids Res.
Hsi-Yuan Huang, Yang-Chi-Dung Lin, Jing Li, Kai-Yao Huang, Sirjana Shrestha, Hsiao-Chin Hong, Yun Tang, Yigang Chen, Chen-Nan Jin, Yuan Yu, Jia-Tong Xu, Yue-Ming Li, Xiao-Xuan Cai, Zhen-Yu Zhou, Xiao-Hang Chen, Yuan-Yuan Pei, Liang Hu, Jin-Jiang Su, Shi-Dong Cui, Fei Wang, Yue-Yang Xie, Si-Yuan Ding, Meng-Fan Luo, Chih-Hung Chou, Nai-Wen Chang, Kai-Wen Chen, Yu-Hsiang Cheng, Xin-Hong Wan, Wen-Lian Hsu, Tzong-Yi Lee, Feng-Xiang Wei, Hsien-Da Huang
2019 J jnl
Characterization and identification of lysine glutarylation based on intrinsic interdependence between positions in the substrate sites.
BMC Bioinform.
Kai-Yao Huang, Hui-Ju Kao, Justin Bo-Kai Hsu, Shun-Long Weng, Tzong-Yi Lee
2019 J jnl
Rapid classification of group B Streptococcus serotypes based on matrix-assisted laser desorption ionization-time of flight mass spectrometry and machine learning techniques.
BMC Bioinform.
Hsin-Yao Wang, Wen-Chi Li, Kai-Yao Huang, Chia-Ru Chung, Jorng-Tzong Horng, Jen-Fu Hsu, Jang-Jih Lu, Tzong-Yi Lee
2019 J jnl
dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data.
Nucleic Acids Res.
Jhih-Hua Jhong, Yu-Hsiang Chi, Wen-Chi Li, Tsai-Hsuan Lin, Kai-Yao Huang, Tzong-Yi Lee
2019 J jnl
dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications.
Nucleic Acids Res.
Kai-Yao Huang, Tzong-Yi Lee, Hui-Ju Kao, Chen-Tse Ma, Chao-Chun Lee, Tsai-Hsuan Lin, Wen-Chi Chang, Hsien-Da Huang
2018 J jnl
Genome-wide discovery of viral microRNAs based on phylogenetic analysis and structural evolution of various human papillomavirus subtypes.
Briefings Bioinform.
Shun-Long Weng, Kai-Yao Huang, Julia Tzu-Ya Weng, Fang-Yu Hung, Tzu-Hao Chang, Tzong-Yi Lee
2018 J jnl
Machine Learning-Based Method for Obesity Risk Evaluation Using Single-Nucleotide Polymorphisms Derived from Next-Generation Sequencing.
J. Comput. Biol.
Hsin-Yao Wang, Shih-Cheng Chang, Wan-Ying Lin, Chun-Hsien Chen, Szu-Hsien Chiang, Kai-Yao Huang, Bo-Yu Chu, Jang-Jih Lu, Tzong-Yi Lee
2017 J jnl
A New Scheme to Characterize and Identify Protein Ubiquitination Sites.
IEEE ACM Trans. Comput. Biol. Bioinform.
Van-Nui Nguyen, Kai-Yao Huang, Chien-Hsun Huang, K. Robert Lai, Tzong-Yi Lee
2017 J jnl
Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas.
BMC Syst. Biol.
Kai-Yao Huang, Tzu-Hao Chang, Jhih-Hua Jhong, Yu-Hsiang Chi, Wen-Chi Li, Chien-Lung Chan, K. Robert Lai, Tzong-Yi Lee
2017 J jnl
Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions.
BMC Syst. Biol.
Min-Gang Su, Julia Tzu-Ya Weng, Justin Bo-Kai Hsu, Kai-Yao Huang, Yu-Hsiang Chi, Tzong-Yi Lee
2017 J jnl
Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features.
BMC Bioinform.
Shun-Long Weng, Kai-Yao Huang, Fergie Joanda Kaunang, Chien-Hsun Huang, Hui-Ju Kao, Tzu-Hao Chang, Hsin-Yao Wang, Jang-Jih Lu, Tzong-Yi Lee
2017 J jnl
MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs.
BMC Syst. Biol.
Hui-Ju Kao, Shun-Long Weng, Kai-Yao Huang, Fergie Joanda Kaunang, Justin Bo-Kai Hsu, Chien-Hsun Huang, Tzong-Yi Lee
2016 J jnl
A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases.
BMC Syst. Biol.
Kai-Yao Huang, Julia Tzu-Ya Weng, Tzong-Yi Lee, Shun-Long Weng
2016 J jnl
Gene expression profiling identifies candidate biomarkers for active and latent tuberculosis.
BMC Bioinform.
Shih-Wei Lee, Lawrence Shih-Hsin Wu, Guan-Mau Huang, Kai-Yao Huang, Tzong-Yi Lee, Julia Tzu-Ya Weng
2016 J jnl
UbiNet: an online resource for exploring the functional associations and regulatory networks of protein ubiquitylation.
Database J. Biol. Databases Curation
Van-Nui Nguyen, Kai-Yao Huang, Julia Tzu-Ya Weng, K. Robert Lai, Tzong-Yi Lee
2016 J jnl
dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins.
Nucleic Acids Res.
Kai-Yao Huang, Min-Gang Su, Hui-Ju Kao, Yun-Chung Hsieh, Jhih-Hua Jhong, Kuang-Hao Cheng, Hsien-Da Huang, Tzong-Yi Lee
2015 J jnl
A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs.
BMC Bioinform.
Hui-Ju Kao, Chien-Hsun Huang, Neil Arvin Bretaña, Cheng-Tsung Lu, Kai-Yao Huang, Shun-Long Weng, Tzong-Yi Lee
2015 J jnl
An interpretable rule-based diagnostic classification of diabetic nephropathy among type 2 diabetes patients.
BMC Bioinform.
Guan-Mau Huang, Kai-Yao Huang, Tzong-Yi Lee, Julia Weng
2015 J jnl
Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities.
BMC Bioinform.
Van-Nui Nguyen, Kai-Yao Huang, Chien-Hsun Huang, Tzu-Hao Chang, Neil Arvin Bretaña, K. Robert Lai, Julia Weng, Tzong-Yi Lee
2015 J jnl
ViralmiR: a support-vector-machine-based method for predicting viral microRNA precursors.
BMC Bioinform.
Kai-Yao Huang, Tzong-Yi Lee, Yu-Chuan Teng, Tzu-Hao Chang
2015 J jnl
dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein
Nucleic Acids Res.
Yi-Ju Chen, Cheng-Tsung Lu, Min-Gang Su, Kai-Yao Huang, Wei-Chieh Ching, Hsiao-Hsiang Yang, Yen-Chen Liao, Yu-Ju Chen, Tzong-Yi Lee
2014 J jnl
Incorporating significant amino acid pairs and protein domains to predict RNA splicing-related proteins with functional roles.
J. Comput. Aided Mol. Des.
Justin Bo-Kai Hsu, Kai-Yao Huang, Julia Tzu-Ya Weng, Chien-Hsun Huang, Tzong-Yi Lee
2014 J jnl
RegPhos 2.0: an updated resource to explore protein kinase-substrate phosphorylation networks in mammals.
Database J. Biol. Databases Curation
Kai-Yao Huang, Hsin-Yi Wu, Yi-Ju Chen, Cheng-Tsung Lu, Min-Gang Su, Yun-Chung Hsieh, Chih-Ming Tsai, Kuo-I Lin, Hsien-Da Huang, Tzong-Yi Lee, Yu-Ju Chen
2014 J jnl
topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins.
Nucleic Acids Res.
Min-Gang Su, Kai-Yao Huang, Cheng-Tsung Lu, Hui-Ju Kao, Ya-Han Chang, Tzong-Yi Lee
2013 J jnl
ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins.
BMC Bioinform.
Kai-Yao Huang, Cheng-Tsung Lu, Neil Arvin Bretaña, Tzong-Yi Lee, Tzu-Hao Chang
2013 J jnl
dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications.
Nucleic Acids Res.
Cheng-Tsung Lu, Kai-Yao Huang, Min-Gang Su, Tzong-Yi Lee, Neil Arvin Bretaña, Wen-Chi Chang, Yi-Ju Chen, Yu-Ju Chen, Hsien-Da Huang
2011 J jnl
Investigation and identification of protein γ-glutamyl carboxylation sites.
BMC Bioinform.
Tzong-Yi Lee, Cheng-Tsung Lu, Shu-An Chen, Neil Arvin Bretaña, Tzu-Hsiu Cheng, Min-Gang Su, Kai-Yao Huang