K. Joeri van der Velde

22 papers Journal 19Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
An exploratory study combining Virtual Reality and Semantic Web for life science research using Graph2VR.
Database J. Biol. Databases Curation
Alexander Kellmann, Sander van den Hoek, Max Postema, W. T. Kars Maassen, Brenda S. Hijmans, Marije van der Geest, K. Joeri van der Velde, Esther van Enckevort, Morris A. Swertz
2024 — conf
FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis.
SWAT4HCLS
Xiaofeng Liao, Yuliia Orlova, Cenna Doornbos, Anna Niehues, Casper de Visser, Junda Huang, Thomas H. A. Ederveen, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen
2024 J jnl
FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis.
J. Biomed. Semant.
Xiaofeng Liao, Thomas H. A. Ederveen, Anna Niehues, Casper de Visser, Junda Huang, Firdaws Badmus, Cenna Doornbos, Yuliia Orlova, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen
2023 J jnl
A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR.
Data Sci. J.
Philip van Damme, Pablo Alarcón Moreno, César Henrique Bernabé, Alberto Cámara Ballesteros, Clémence M. A. Le Cornec, Bruna dos Santos Vieira, K. Joeri van der Velde, Shuxin Zhang, Claudio Carta, Ronald Cornet, Peter A. C. 't Hoen, Annika Jacobsen, Morris A. Swertz, Marco Roos, Nirupama Benis
2023 — conf
Surveyed common data access policies preferences amongst European Reference Networks.
SWAT4HCLS
Alberto Cámara Ballesteros, Nirupama Benis, César Henrique Bernabé, Inés de Oliveira Coelho, Clémence M. A. Le Cornec, Aylin Demir, Bruna dos Santos Vieira, Jose Antonio Ramírez, K. Joeri van der Velde, Shuxin Zhang, Ronald Cornet, Annika Jacobsen, Marco Roos, Franz Schaefer, Morris A. Swertz, Mark D. Wilkinson
2023 J jnl
Ten quick tips for building FAIR workflows.
PLoS Comput. Biol.
Casper de Visser, Lennart F. Johansson, Purva Kulkarni, Hailiang Mei, Pieter B. T. Neerincx, K. Joeri van der Velde, Peter Horvatovich, Alain J. van Gool, Morris A. Swertz, Peter A. C. 't Hoen, Anna Niehues
2022 J jnl
Blockchain for Genomics: A Systematic Literature Review.
Distributed Ledger Technol. Res. Pract.
Mohammed Alghazwi, Fatih Turkmen, K. Joeri van der Velde, Dimka Karastoyanova
2022 J jnl
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data.
J. Biomed. Semant.
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach, Leo J. Schultze Kool, Morris A. Swertz, Philip van Damme, K. Joeri van der Velde, Nawel Lalout, Shuxin Zhang, Marco Roos
2021 J jnl
Blockchain for Genomics: A Systematic Literature Review.
CoRR
Mohammed Alghazwi, Fatih Turkmen, K. Joeri van der Velde, Dimka Karastoyanova
2019 J jnl
MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians.
Bioinform.
K. Joeri van der Velde, Floris Imhann, Bart Charbon, Chao Pang, David van Enckevort, Mariska Slofstra, Ruggero Barbieri, Rudi Alberts, Dennis Hendriksen, Fleur D. L. Kelpin, Mark de Haan, Tommy de Boer, Sido Haakma, Connor Stroomberg, Salome Scholtens, Gert-Jan van de Geijn, Eleonora A. M. Festen, Rinse K. Weersma, Morris A. Swertz
2018 — conf
Machine Learning for Multi-Omics Data Integration and Variant Pathogenicity Estimation.
eScience
Shuang Li, K. Joeri van der Velde, Morris A. Swertz
2016 J jnl
MOLGENIS/connect: a system for semi-automatic integration of heterogeneous phenotype data with applications in biobanks.
Bioinform.
Chao Pang, David van Enckevort, Mark de Haan, Fleur D. L. Kelpin, Jonathan Jetten, Dennis Hendriksen, Tommy de Boer, Bart Charbon, Erwin Winder, K. Joeri van der Velde, Dany Doiron, Isabel Fortier, Hans L. Hillege, Morris A. Swertz
2015 J jnl
BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing.
J. Am. Medical Informatics Assoc.
Chao Pang, Dennis Hendriksen, Martijn Dijkstra, K. Joeri van der Velde, Joël Kuiper, Hans L. Hillege, Morris A. Swertz
2015 J jnl
MOLGENIS/OMX for multi-omics and personalized medicine.
J. Clin. Bioinform.
Morris A. Swertz, K. Joeri van der Velde
2015 J jnl
Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains.
BMC Bioinform.
Konrad Zych, Yang Li, K. Joeri van der Velde, Ronny Joosen, Wilco Ligterink, Ritsert C. Jansen, Danny Arends
2015 J jnl
SORTA: a system for ontology-based re-coding and technical annotation of biomedical phenotype data.
Database J. Biol. Databases Curation
Chao Pang, Annet Sollie, Anna Sijtsma, Dennis Hendriksen, Bart Charbon, Mark de Haan, Tommy de Boer, Fleur D. L. Kelpin, Jonathan Jetten, K. Joeri van der Velde, Nynke Smidt, Rolf Sijmons, Hans L. Hillege, Morris A. Swertz
2014 J jnl
WormQTL
Nucleic Acids Res.
K. Joeri van der Velde, Mark de Haan, Konrad Zych, Danny Arends, L. Basten Snoek, Jan E. Kammenga, Ritsert C. Jansen, Morris A. Swertz, Yang Li
2013 J jnl
WormQTL - public archive and analysis web portal for natural variation data in
Nucleic Acids Res.
L. Basten Snoek, K. Joeri van der Velde, Danny Arends, Yang Li, Antje Beyer, Mark Elvin, Jasmin Fisher, Alex Hajnal, Michael O. Hengartner, Gino B. Poulin, Miriam Rodriguez, Tobias Schmid, Sabine Schrimpf, Feng Xue, Ritsert C. Jansen, Jan E. Kammenga, Morris A. Swertz
2012 J jnl
Bioinformatics tools and database resources for systems genetics analysis in mice - a short review and an evaluation of future needs.
Briefings Bioinform.
Caroline Durrant, Morris A. Swertz, Rudi Alberts, Danny Arends, Steffen Möller, Richard Mott, Pjotr Prins, K. Joeri van der Velde, Ritsert C. Jansen, Klaus Schughart
2012 J jnl
xQTL workbench: a scalable web environment for multi-level QTL analysis.
Bioinform.
Danny Arends, K. Joeri van der Velde, Pjotr Prins, Karl W. Broman, Steffen Möller, Ritsert C. Jansen, Morris A. Swertz
2011 J jnl
OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript.
BMC Bioinform.
Tomasz Adamusiak, Tony Burdett, Natalja Kurbatova, K. Joeri van der Velde, Niran Abeygunawardena, Despoina Antonakaki, Misha Kapushesky, Helen E. Parkinson, Morris A. Swertz
2010 J jnl
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.
BMC Bioinform.
Morris A. Swertz, Martijn Dijkstra, Tomasz Adamusiak, K. Joeri van der Velde, Alexandros Kanterakis, Erik T. Roos, Joris Lops, Gudmundur A. Thorisson, Danny Arends, George Byelas, Juha Muilu, Anthony J. Brookes, Engbert O. de Brock, Ritsert C. Jansen, Helen E. Parkinson