Jürgen Zanghellini

22 papers Journal 20Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Minimal cut sets in metabolic networks: from conceptual foundations to applications in metabolic engineering and biomedicine.
Briefings Bioinform.
Steffen Klamt, Jürgen Zanghellini, Axel von Kamp
2024 J jnl
Combined LC-MS/MS feature grouping, statistical prioritization, and interactive networking in msFeaST.
Bioinform.
Kevin Mildau, Christoph Bueschl, Jürgen Zanghellini, Justin J. J. van der Hooft
2024 — conf
Flexible Nets to Improve GEM Cell Factories by Combining Kinetic and Proteomics Data.
CMSB
Jorge Lázaro, Jorge Júlvez, Jürgen Zanghellini
2024 J jnl
Logistic PCA explains differences between genome-scale metabolic models in terms of metabolic pathways.
PLoS Comput. Biol.
Leopold Zehetner, Diana Széliová, Barbara Kraus, Juan A. Hernandez Bort, Jürgen Zanghellini
2024 J jnl
PyCoMo: a python package for community metabolic model creation and analysis.
Bioinform.
Michael Predl, Marianne Mießkes, Thomas Rattei, Jürgen Zanghellini
2022 J jnl
Elementary vectors and autocatalytic sets for resource allocation in next-generation models of cellular growth.
PLoS Comput. Biol.
Stefan Müller, Diana Széliová, Jürgen Zanghellini
2022 J jnl
Homologue series detection and management in LC-MS data with
Bioinform.
Kevin Mildau, Justin J. J. van der Hooft, Mira Flasch, Benedikt Warth, Yasin El Abiead, Gunda Koellensperger, Jürgen Zanghellini, Christoph Bueschl
2022 J jnl
PeakBot: machine-learning-based chromatographic peak picking.
Bioinform.
Christoph Bueschl, Maria Doppler, Elisabeth Varga, Bernhard Seidl, Mira Flasch, Benedikt Warth, Jürgen Zanghellini
2022 J jnl
Probabilistic quotient's work and pharmacokinetics' contribution: countering size effect in metabolic time series measurements.
BMC Bioinform.
Mathias Gotsmy, Julia Brunmair, Christoph Bueschl, Christopher Gerner, Jürgen Zanghellini
2021 J jnl
EFMlrs: a Python package for elementary flux mode enumeration via lexicographic reverse search.
BMC Bioinform.
Bianca A. Buchner, Jürgen Zanghellini
2021 J jnl
Inclusion of maintenance energy improves the intracellular flux predictions of CHO.
PLoS Comput. Biol.
Diana Széliová, Jerneja Stor, Isabella Thiel, Marcus Weinguny, Michael Hanscho, Gabriele Lhota, Nicole Borth, Jürgen Zanghellini, David E. Ruckerbauer, Isabel Rocha
2019 J jnl
Flux tope analysis: studying the coordination of reaction directions in metabolic networks.
Bioinform.
Matthias P. Gerstl, Stefan Müller, Georg Regensburger, Jürgen Zanghellini
2017 J jnl
CHOmine: an integrated data warehouse for CHO systems biology and modeling.
Database J. Biol. Databases Curation
Matthias P. Gerstl, Michael Hanscho, David E. Ruckerbauer, Jürgen Zanghellini, Nicole Borth
2017 J jnl
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.
PLoS Comput. Biol.
Steffen Klamt, Georg Regensburger, Matthias P. Gerstl, Christian Jungreuthmayer, Stefan Schuster, Radhakrishnan Mahadevan, Jürgen Zanghellini, Stefan Müller
2017 J jnl
Optimal knockout strategies in genome-scale metabolic networks using particle swarm optimization.
BMC Bioinform.
Govind Nair, Christian Jungreuthmayer, Jürgen Zanghellini
2016 J jnl
Exact quantification of cellular robustness in genome-scale metabolic networks.
Bioinform.
Matthias P. Gerstl, Steffen Klamt, Christian Jungreuthmayer, Jürgen Zanghellini
2015 J jnl
Designing minimal microbial strains of desired functionality using a genetic algorithm.
Algorithms Mol. Biol.
Govind Nair, Christian Jungreuthmayer, Michael Hanscho, Jürgen Zanghellini
2015 J jnl
tEFMA: computing thermodynamically feasible elementary flux modes in metabolic networks.
Bioinform.
Matthias P. Gerstl, Christian Jungreuthmayer, Jürgen Zanghellini
2013 J jnl
Comparison and improvement of algorithms for computing minimal cut sets.
BMC Bioinform.
Christian Jungreuthmayer, Govind Nair, Steffen Klamt, Jürgen Zanghellini
2013 — conf
Designing an optimally ethanol producing E. coli strain using constrained minimal cut sets.
EUSIPCO
Christian Jungreuthmayer, Margot Sonnleitner, Gerald Striedner, Jürgen Mairhofer, Jürgen Zanghellini
2013 J jnl
regEfmtool: Speeding up elementary flux mode calculation using transcriptional regulatory rules in the form of three-state logic.
Biosyst.
Christian Jungreuthmayer, David E. Ruckerbauer, Jürgen Zanghellini
2012 J jnl
Designing optimal cell factories: integer programming couples elementary mode analysis with regulation.
BMC Syst. Biol.
Christian Jungreuthmayer, Jürgen Zanghellini