Jörg Stelling

44 papers C 4Journal 32Unranked 6
YearRankTypeTitle / Venue / Authors
2025 — conf
Minimal Metabolic Exchanges for Microbial Communities in a Chemostat at Steady State.
CMSB
Alix Moawad, Jörg Stelling
2025 — conf
Optimal Input Design for Model Selection in Systems with Cell-to-Cell Variability.
CMSB
Andrea Stallvik, Hans-Michael Kaltenbach, Jörg Stelling
2024 J jnl
ENKIE: a package for predicting enzyme kinetic parameter values and their uncertainties.
Bioinform.
Mattia G. Gollub, Thierry Backes, Hans-Michael Kaltenbach, Jörg Stelling
2023 J jnl
Assumptions on decision making and environment can yield multiple steady states in microbial community models.
BMC Bioinform.
Axel Theorell, Jörg Stelling
2023 J jnl
Efficient design of synthetic gene circuits under cell-to-cell variability.
BMC Bioinform.
Baptiste Turpin, Eline Y. Bijman, Hans-Michael Kaltenbach, Jörg Stelling
2022 J jnl
Metabolic Networks, Microbial Consortia, and Analogies to Smart Grids.
Proc. IEEE
Axel Theorell, Jörg Stelling
2022 J jnl
PolyRound: polytope rounding for random sampling in metabolic networks.
Bioinform.
Axel Theorell, Johann F. Jadebeck, Katharina Nöh, Jörg Stelling
2022 J jnl
Systems and Synthetic Biology.
Proc. IEEE
Mustafa Hani Khammash, Jörg Stelling
2021 — conf
Microbial Community Decision Making Models in Batch and Chemostat Cultures.
CMSB
Axel Theorell, Jörg Stelling
2021 — conf
Population Design for Synthetic Gene Circuits.
CMSB
Baptiste Turpin, Eline Y. Bijman, Hans-Michael Kaltenbach, Jörg Stelling
2021 J jnl
Probabilistic thermodynamic analysis of metabolic networks.
Bioinform.
Mattia G. Gollub, Hans-Michael Kaltenbach, Jörg Stelling
2020 J jnl
BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks.
Bioinform.
Pencho Yordanov, Jörg Stelling, Irene Otero-Muras
2020 J jnl
TopoFilter: a MATLAB package for mechanistic model identification in systems biology.
BMC Bioinform.
Mikolaj Rybinski, Simon Möller, Mikael Sunnåker, Claude Lormeau, Jörg Stelling
2017 J jnl
Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling.
PLoS Comput. Biol.
Irene Otero-Muras, Pencho Yordanov, Jörg Stelling
2016 J jnl
Efficient Reconstruction of Predictive Consensus Metabolic Network Models.
PLoS Comput. Biol.
Ruben G. A. van Heck, Mathias Ganter, Vítor A. P. Martins dos Santos, Jörg Stelling
2016 J jnl
Modular Parameter Identification of Biomolecular Networks.
SIAM J. Sci. Comput.
Moritz Lang, Jörg Stelling
2015 — ch.
Deterministic Description of Biochemical Networks.
Encyclopedia of Systems and Control
Jörg Stelling, Hans-Michael Kaltenbach
2015 J jnl
Efficient Characterization of Parametric Uncertainty of Complex (Bio)chemical Networks.
PLoS Comput. Biol.
Claudia Schillings, Mikael Sunnåker, Jörg Stelling, Christoph Schwab
2014 J jnl
A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves.
BMC Syst. Biol.
Irene Otero-Muras, Pencho Yordanov, Jörg Stelling
2014 J jnl
Accurate cell segmentation in microscopy images using membrane patterns.
Bioinform.
Sotiris Dimopoulos, Christian E. Mayer, Fabian Rudolf, Jörg Stelling
2014 J jnl
Topological augmentation to infer hidden processes in biological systems.
Bioinform.
Mikael Sunnåker, Elías Zamora-Sillero, Adrián López García de Lomana, Florian Rudroff, Uwe Sauer, Jörg Stelling, Andreas Wagner
2013 J jnl
MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.
Bioinform.
Mathias Ganter, Thomas Bernard, Sébastien Moretti, Jörg Stelling, Marco Pagni
2013 J jnl
Modular, rule-based modeling for the design of eukaryotic synthetic gene circuits.
BMC Syst. Biol.
Mario Andrea Marchisio, Moreno Colaiacovo, Ellis Whitehead, Jörg Stelling
2013 J jnl
Near-optimal experimental design for model selection in systems biology.
Bioinform.
Alberto Giovanni Busetto, Alain Hauser, Gabriel Krummenacher, Mikael Sunnåker, Sotiris Dimopoulos, Cheng Soon Ong, Jörg Stelling, Joachim M. Buhmann
2012 J jnl
A specialized ODE integrator for the efficient computation of parameter sensitivities.
BMC Syst. Biol.
Pedro Gonnet, Sotiris Dimopoulos, Lukas Widmer, Jörg Stelling
2012 J jnl
System-Level Insights into Yeast Metabolism by Thermodynamic Analysis of Elementary Flux Modes.
PLoS Comput. Biol.
Stefan J. Jol, Anne Kümmel, Marco Terzer, Jörg Stelling, Matthias Heinemann
2011 J jnl
Automatic Design of Digital Synthetic Gene Circuits.
PLoS Comput. Biol.
Mario Andrea Marchisio, Jörg Stelling
2011 J jnl
Efficient characterization of high-dimensional parameter spaces for systems biology.
BMC Syst. Biol.
Elías Zamora-Sillero, Marc Hafner, Ariane Ibig, Jörg Stelling, Andreas Wagner
2011 C conf
Graph-Based Decomposition of Biochemical Reaction Networks into Monotone Subsystems.
WABI
Hans-Michael Kaltenbach, Simona Constantinescu, Justin Feigelman, Jörg Stelling
2009 — ch.
Automatic Control in Systems Biology.
Handbook of Automation
Henry Mirsky, Jörg Stelling, Rudiyanto Gunawan, Neda Bagheri, Stephanie R. Taylor, Eric Kwei, Jason E. Shoemaker, Francis J. Doyle III
2009 — conf
Parallel Extreme Ray and Pathway Computation.
PPAM (2)
Marco Terzer, Jörg Stelling
2009 J jnl
Precise Regulation of Gene Expression Dynamics Favors Complex Promoter Architectures.
PLoS Comput. Biol.
Dirk Müller, Jörg Stelling
2009 C conf
Synthetic Gene Network Computational Design.
ISCAS
Mario Andrea Marchisio, Jörg Stelling
2008 J jnl
Circadian Phase Resetting via Single and Multiple Control Targets.
PLoS Comput. Biol.
Neda Bagheri, Jörg Stelling, Francis J. Doyle III
2008 J jnl
Computational design of synthetic gene circuits with composable parts.
Bioinform.
Mario Andrea Marchisio, Jörg Stelling
2008 J jnl
Large-scale computation of elementary flux modes with bit pattern trees.
Bioinform.
Marco Terzer, Jörg Stelling
2007 J jnl
Elementary flux modes - state-of-the-art implementation and scope of application.
BMC Syst. Biol.
Marco Terzer, Jörg Stelling
2007 J jnl
Quantitative performance metrics for robustness in circadian rhythms.
Bioinform.
Neda Bagheri, Jörg Stelling, Francis J. Doyle III
2006 C conf
Accelerating the Computation of Elementary Modes Using Pattern Trees.
WABI
Marco Terzer, Jörg Stelling
2005 C conf
Optimal phase-tracking of the nonlinear circadian oscillator.
ACC
Neda Bagheri, Jörg Stelling, Francis J. Doyle
2005 J jnl
Sensitivity analysis of oscillatory (bio)chemical systems.
Comput. Chem. Eng.
Daniel E. Zak, Jörg Stelling, Francis J. Doyle III
2003 J jnl
FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.
Bioinform.
Steffen Klamt, Jörg Stelling, Martin Ginkel, Ernst Dieter Gilles
2003 — conf
Making predictions about robustness and flexibility from metabolic network structure.
German Conference on Bioinformatics
Stefan Schuster, Steffen Klamt, Jörg Stelling
2003 J jnl
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Bioinform.
Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang