Jörg Rahnenführer

62 papers A 1B 1C 2Journal 47Unranked 8

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	AlertGS: determining alerts for gene sets. Bioinform. Franziska Kappenberg, Jörg Rahnenführer
2024	J	`jnl`	LDAPrototype: a model selection algorithm to improve reliability of latent Dirichlet allocation. PeerJ Comput. Sci. Jonas Rieger, Carsten Jentsch, Jörg Rahnenführer
2023	C	`conf`	Debunking Disinformation with GADMO: A Topic Modeling Analysis of a Comprehensive Corpus of German-language Fact-Checks. LDK Jonas Rieger, Nico Hornig, Jonathan Flossdorf, Henrik Müller, Stephan Mündges, Carsten Jentsch, Jörg Rahnenführer, Christina Elmer
2023	J	`jnl`	Designs for the simultaneous inference of concentration-response curves. BMC Bioinform. Leonie Schürmeyer, Kirsten Schorning, Jörg Rahnenführer
2022	J	`jnl`	Benchmark of filter methods for feature selection in high-dimensional gene expression survival data. Briefings Bioinform. Andrea Bommert, Thomas Welchowski, Matthias Schmid, Jörg Rahnenführer
2022	J	`jnl`	Correction to: Combining heterogeneous subgroups with graph-structured variable selection priors for Cox regression. BMC Bioinform. Katrin Madjar, Manuela Zucknick, Katja Ickstadt, Jörg Rahnenführer
2022	—	`ch.`	Editorial. Mach. Learn. under Resour. Constraints Vol. 3 (3) Katharina Morik, Jörg Rahnenführer, Christian Wietfeld
2022	—	`book`	Machine Learning under Resource Constraints - Volume 3: Applications Mach. Learn. under Resour. Constraints Vol. 3 Katharina Morik, Jörg Rahnenführer, Christian Wietfeld
2022	—	`ch.`	Survival Prediction and Model Selection. Mach. Learn. under Resour. Constraints Vol. 3 (3) Jörg Rahnenführer, Michel Lang, Jakob Richter
2021	J	`jnl`	Combining heterogeneous subgroups with graph-structured variable selection priors for Cox regression. BMC Bioinform. Katrin Madjar, Manuela Zucknick, Katja Ickstadt, Jörg Rahnenführer
2021	J	`jnl`	Comparison of observation-based and model-based identification of alert concentrations from concentration-expression data. Bioinform. Franziska Kappenberg, Marianna Grinberg, Xiaoqi Jiang, Annette Kopp-Schneider, Jan G. Hengstler, Jörg Rahnenführer
2021	J	`jnl`	Employing an Adjusted Stability Measure for Multi-Criteria Model Fitting on Data Sets with Similar Features. CoRR Andrea Bommert, Jörg Rahnenführer, Michel Lang
2021	—	`conf`	Employing an Adjusted Stability Measure for Multi-criteria Model Fitting on Data Sets with Similar Features. LOD Andrea Bommert, Jörg Rahnenführer, Michel Lang
2021	J	`jnl`	Implications on Feature Detection When Using the Benefit-Cost Ratio. SN Comput. Sci. Rudolf Jagdhuber, Jörg Rahnenführer
2021	J	`jnl`	MODES: model-based optimization on distributed embedded systems. Mach. Learn. Junjie Shi, Jiang Bian, Jakob Richter, Kuan-Hsun Chen, Jörg Rahnenführer, Haoyi Xiong, Jian-Jia Chen
2021	—	`conf`	RollingLDA: An Update Algorithm of Latent Dirichlet Allocation to Construct Consistent Time Series from Textual Data. EMNLP (Findings) Jonas Rieger, Carsten Jentsch, Jörg Rahnenführer
2021	J	`jnl`	Weighted Cox regression for the prediction of heterogeneous patient subgroups. BMC Medical Informatics Decis. Mak. Katrin Madjar, Jörg Rahnenführer
2020	—	`conf`	Adjusted Measures for Feature Selection Stability for Data Sets with Similar Features. LOD (1) Andrea Bommert, Jörg Rahnenführer
2020	J	`jnl`	Adjusted Measures for Feature Selection Stability for Data Sets with Similar Features. CoRR Andrea Bommert, Jörg Rahnenführer
2020	—	`conf`	Assessing the Uncertainty of the Text Generating Process Using Topic Models. PKDD/ECML Workshops Jonas Rieger, Carsten Jentsch, Jörg Rahnenführer
2020	J	`jnl`	Benchmark for filter methods for feature selection in high-dimensional classification data. Comput. Stat. Data Anal. Andrea Bommert, Xudong Sun, Bernd Bischl, Jörg Rahnenführer, Michel Lang
2020	J	`jnl`	Cost-Constrained feature selection in binary classification: adaptations for greedy forward selection and genetic algorithms. BMC Bioinform. Rudolf Jagdhuber, Michel Lang, Arnulf Stenzl, Jochen Neuhaus, Jörg Rahnenführer
2020	J	`jnl`	Feature Selection Methods for Cost-Constrained Classification in Random Forests. CoRR Rudolf Jagdhuber, Michel Lang, Jörg Rahnenführer
2020	J	`jnl`	Implications on Feature Detection when using the Benefit-Cost Ratio. CoRR Rudolf Jagdhuber, Jörg Rahnenführer
2020	C	`conf`	Improving Latent Dirichlet Allocation: On Reliability of the Novel Method LDAPrototype. NLDB Jonas Rieger, Jörg Rahnenführer, Carsten Jentsch
2020	J	`jnl`	Improving Reliability of Latent Dirichlet Allocation by Assessing Its Stability Using Clustering Techniques on Replicated Runs. CoRR Jonas Rieger, Lars Koppers, Carsten Jentsch, Jörg Rahnenführer
2020	A	`conf`	Model-based optimization with concept drifts. GECCO Jakob Richter, Junjie Shi, Jian-Jia Chen, Jörg Rahnenführer, Michel Lang
2019	—	`conf`	High Dimensional Restrictive Federated Model Selection with Multi-objective Bayesian Optimization over Shifted Distributions. IntelliSys (1) Xudong Sun, Andrea Bommert, Florian Pfisterer, Jörg Rahnenführer, Michel Lang, Bernd Bischl
2019	J	`jnl`	High Dimensional Restrictive Federated Model Selection with multi-objective Bayesian Optimization over shifted distributions. CoRR Xudong Sun, Andrea Bommert, Florian Pfisterer, Jörg Rahnenführer, Michel Lang, Bernd Bischl
2019	J	`jnl`	Model-based optimization of subgroup weights for survival analysis. Bioinform. Jakob Richter, Katrin Madjar, Jörg Rahnenführer
2017	J	`jnl`	A Multicriteria Approach to Find Predictive and Sparse Models with Stable Feature Selection for High-Dimensional Data. Comput. Math. Methods Medicine Andrea Bommert, Jörg Rahnenführer, Michel Lang
2017	J	`jnl`	DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs. BMC Bioinform. Vera Rieder, Bernhard Blank-Landeshammer, Marleen Stuhr, Tilman Schell, Karsten Biß, Laxmikanth Kollipara, Achim Meyer, Markus Pfenninger, Hildegard Westphal, Albert Sickmann, Jörg Rahnenführer
2017	—	`conf`	RAMBO: Resource-Aware Model-Based Optimization with Scheduling for Heterogeneous Runtimes and a Comparison with Asynchronous Model-Based Optimization. LION Helena Kotthaus, Jakob Richter, Andreas Lang, Janek Thomas, Bernd Bischl, Peter Marwedel, Jörg Rahnenführer, Michel Lang
2017	J	`jnl`	Variable selection for disease progression models: methods for oncogenetic trees and application to cancer and HIV. BMC Bioinform. Katrin Hainke, Sebastian Szugat, Roland Fried, Jörg Rahnenführer
2016	—	`conf`	Faster Model-Based Optimization Through Resource-Aware Scheduling Strategies. LION Jakob Richter, Helena Kotthaus, Bernd Bischl, Peter Marwedel, Jörg Rahnenführer, Michel Lang
2016	J	`jnl`	Machine Learning meets Data-Driven Journalism: Boosting International Understanding and Transparency in News Coverage. CoRR Elena Erdmann, Karin Boczek, Lars Koppers, Gerret von Nordheim, Christian Pölitz, Alejandro Molina, Katharina Morik, Henrik Müller, Jörg Rahnenführer, Kristian Kersting
2016	J	`jnl`	TiMEx: a waiting time model for mutually exclusive cancer alterations. Bioinform. Simona Constantinescu, Ewa Szczurek, Pejman Mohammadi, Jörg Rahnenführer, Niko Beerenwinkel
2015	J	`jnl`	Invited presentations, junior research groups and research highlights at GCB 2015. PeerJ Prepr. Axel Mosig, Jörg Rahnenführer, Martin Eisenacher, Sven Rahmann
2015	J	`jnl`	Poster abstracts of GCB 2015. PeerJ Prepr. Martin Eisenacher, Jörg Rahnenführer, Axel Mosig, Sven Rahmann
2011	J	`jnl`	Modelling non-stationary dynamic gene regulatory processes with the BGM model. Comput. Stat. Marco Grzegorczyk, Dirk Husmeier, Jörg Rahnenführer
2011	J	`jnl`	Survival models with preclustered gene groups as covariates. BMC Bioinform. Kai Kammers, Michel Lang, Jan G. Hengstler, Marcus Schmidt, Jörg Rahnenführer
2010	J	`jnl`	Comparison of scores for bimodality of gene expression distributions and genome-wide evaluation of the prognostic relevance of high-scoring genes. BMC Bioinform. Birte Hellwig, Jan G. Hengstler, Marcus Schmidt, Mathias C. Gehrmann, Wiebke Schormann, Jörg Rahnenführer
2010	J	`jnl`	Going from where to why - interpretable prediction of protein subcellular localization. Bioinform. Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher
2010	J	`jnl`	Modelling Nonstationary Gene Regulatory Processes. Adv. Bioinformatics Marco Grzegorczyk, Dirk Husmeier, Jörg Rahnenführer
2010	J	`jnl`	YLoc - an interpretable web server for predicting subcellular localization. Nucleic Acids Res. Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher
2009	J	`jnl`	Retention time alignment algorithms for LC/MS data must consider non-linear shifts. Bioinform. Katharina Podwojski, Arno Fritsch, Daniel C. Chamrad, Wolfgang Paul, Barbara Sitek, Kai Stühler, Petra Mutzel, Christian Stephan, Helmut E. Meyer, Wolfgang Urfer, Katja Ickstadt, Jörg Rahnenführer
2008	—	`conf`	Applications of semantic similarity measures. Ontologies and Text Mining for Life Sciences Andreas Schlicker, Fidel Ramírez, Jörg Rahnenführer, Carola Huthmacher, Alejandro Pironti, Francisco S. Domingues, Thomas Lengauer, Mario Albrecht
2008	J	`jnl`	Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores. Bioinform. Jasmina Bogojeska, Adrian Alexa, André Altmann, Thomas Lengauer, Jörg Rahnenführer
2008	J	`jnl`	Stability analysis of mixtures of mutagenetic trees. BMC Bioinform. Jasmina Bogojeska, Thomas Lengauer, Jörg Rahnenführer
2007	J	`jnl`	Conformational analysis of alternative protein structures. Bioinform. Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
2006	J	`jnl`	A new measure for functional similarity of gene products based on Gene Ontology. BMC Bioinform. Andreas Schlicker, Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
2006	J	`jnl`	Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinform. Adrian Alexa, Jörg Rahnenführer, Thomas Lengauer
2005	J	`jnl`	Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinform. Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer
2005	J	`jnl`	Confirmation of human protein interaction data by human expression data. BMC Bioinform. Andreas Hahn, Jörg Rahnenführer, Priti Talwar, Thomas Lengauer
2005	J	`jnl`	Estimating cancer survival and clinical outcome based on genetic tumor progression scores. Bioinform. Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, Thomas Lengauer
2005	J	`jnl`	Learning Multiple Evolutionary Pathways from Cross-Sectional Data. J. Comput. Biol. Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
2005	J	`jnl`	Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinform. Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer
2004	J	`jnl`	Hybrid clustering for microarray image analysis combining intensity and shape features. BMC Bioinform. Jörg Rahnenführer, Daniel Bozinov
2004	B	`conf`	Learning multiple evolutionary pathways from cross-sectional data. RECOMB Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
2004	J	`jnl`	Predicting protein structure classes from function predictions. Bioinform. Ingolf Sommer, Jörg Rahnenführer, Francisco S. Domingues, Ulrik de Lichtenberg, Thomas Lengauer
2002	J	`jnl`	Multivariate permutation tests for the k-sample problem with clustered data. Comput. Stat. Jörg Rahnenführer
2002	J	`jnl`	Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering. Bioinform. Daniel Bozinov, Jörg Rahnenführer