Jörg Fallmann

12 papers Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
RNA interaction format: a general data format for RNA interactions.
Bioinform.
Richard A. Schäfer, Dominik Rabsch, Guillaume E. Scholz, Peter F. Stadler, Wolfgang R. Hess, Rolf Backofen, Jörg Fallmann, Björn Voß
2021 J jnl
LazyB: fast and cheap genome assembly.
Algorithms Mol. Biol.
Thomas Gatter, Sarah von Löhneysen, Jörg Fallmann, Polina Drozdova, Tom Hartmann, Peter F. Stadler
2021 — conf
Machine Learning Studies of Non-coding RNAs based on Artificially Constructed Training Data.
BIOINFORMATICS
Mirele C. S. F. Costa, João Victor de Araújo Oliveira, Waldeyr M. C. Silva, Rituparno Sen, Jörg Fallmann, Peter F. Stadler, Maria Emília M. T. Walter
2021 J jnl
Weighted Consensus Segmentations.
Comput.
Halima Saker, Rainer Machné, Jörg Fallmann, Douglas B. Murray, Ahmad M. Shahin, Peter F. Stadler
2020 J jnl
Are spliced ncRNA host genes distinct classes of lncRNAs?
Theory Biosci.
Rituparno Sen, Jörg Fallmann, Maria Emília M. T. Walter, Peter F. Stadler
2019 J jnl
Automatic curation of large comparative animal MicroRNA datasets.
Bioinform.
Ali M. Yazbeck, Peter F. Stadler, Kifah Tout, Jörg Fallmann
2019 J jnl
The RNA workbench 2.0: next generation RNA data analysis.
Nucleic Acids Res.
Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria A. Doyle, Tomas Klingström, Florian Eggenhofer, Peter F. Stadler, Rolf Backofen, Björn A. Grüning
2018 J jnl
Accurate mapping of tRNA reads.
Bioinform.
Anne Hoffmann, Jörg Fallmann, Elisa Vilardo, Mario Mörl, Peter F. Stadler, Fabian Amman
2018 J jnl
Accurate mapping of tRNA reads.
Bioinform.
Anne Hoffmann, Jörg Fallmann, Elisa Vilardo, Mario Mörl, Peter F. Stadler, Fabian Amman
2017 J jnl
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Nucleic Acids Res.
Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen
2016 J jnl
AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements.
Nucleic Acids Res.
Jörg Fallmann, Vitaly Sedlyarov, Andrea Tanzer, Pavel Kovarik, Ivo L. Hofacker
2011 J jnl
AREsite: a database for the comprehensive investigation of AU-rich elements.
Nucleic Acids Res.
Andreas R. Gruber, Jörg Fallmann, Franz Kratochvill, Pavel Kovarik, Ivo L. Hofacker