Jörg Ackermann

25 papers Journal 24
YearRankTypeTitle / Venue / Authors
2025 J jnl
Computational analysis of IL-6/IL-22 signaling in liver disease.
Biosyst.
Marcus Keßler, Lara Klemt, Marius Kirchner, Jörg Ackermann, Heiko Mühl, Christoph Welsch, Ina Koch
2024 J jnl
Graph-theoretical prediction of biological modules in quaternary structures of large protein complexes.
Bioinform.
Florian J. Gisdon, Mariella Zunker, Jan Niclas Wolf, Kai Prüfer, Jörg Ackermann, Christoph Welsch, Ina Koch
2023 J jnl
Comparison of radiomics models and dual-energy material decomposition to decipher abdominal lymphoma in contrast-enhanced CT.
Int. J. Comput. Assist. Radiol. Surg.
Simon Bernatz, Vitali Koch, Daniel Pinto dos Santos, Jörg Ackermann, Leon D. Grünewald, Inga Weitkamp, Ibrahim Yel, Simon S. Martin, Lukas Lenga, Jan-Erik Scholtz, Thomas J. Vogl, Scherwin Mahmoudi
2023 J jnl
Evaluation of automatic discrimination between benign and malignant prostate tissue in the era of high precision digital pathology.
BMC Bioinform.
Yauheniya Zhdanovich, Jörg Ackermann, Peter J. Wild, Jens Köllermann, Katrin Bankov, Claudia Döring, Nadine Flinner, Henning Reis, Mike Wenzel, Benedikt Höh, Philipp Mandel, Thomas J. Vogl, Patrick Harter, Katharina Filipski, Ina Koch, Simon Bernatz
2023 J jnl
Investigation of metabolic pathways from gut microbiome analyses regarding type 2 diabetes mellitus using artificial neural networks.
Discov. Artif. Intell.
Julienne Siptroth, Olga Moskalenko, Carsten Krumbiegel, Jörg Ackermann, Ina Koch, Heike Pospisil
2023 J jnl
Radiomics for therapy-specific head and neck squamous cell carcinoma survival prognostication (part I).
BMC Medical Imaging
Simon Bernatz, Ines Böth, Jörg Ackermann, Iris Burck, Scherwin Mahmoudi, Lukas Lenga, Simon S. Martin, Jan-Erik Scholtz, Vitali Koch, Leon D. Grünewald, Ina Koch, Timo Stöver, Peter J. Wild, Ria Winkelmann, Thomas J. Vogl, Daniel Pinto dos Santos
2022 J jnl
Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways applying Petri net formalism and in silico knockout analysis.
PLoS Comput. Biol.
Leonie Amstein, Jörg Ackermann, Jennifer Hannig, Ivan Dikic, Simone Fulda, Ina Koch
2022 J jnl
The canonical and non-canonical NF-κB pathways and their crosstalk: A comparative study based on Petri nets.
Biosyst.
Kira Trares, Jörg Ackermann, Ina Koch
2021 J jnl
PTGL: extension to graph-based topologies of cryo-EM data for large protein structures.
Bioinform.
Jan Niclas Wolf, Marcus Keßler, Jörg Ackermann, Ina Koch
2021 J jnl
Potential of high dimensional radiomic features to assess blood components in intraaortic vessels in non-contrast CT scans.
BMC Medical Imaging
Scherwin Mahmoudi, Simon S. Martin, Jörg Ackermann, Yauheniya Zhdanovich, Ina Koch, Thomas J. Vogl, Moritz H. Albrecht, Lukas Lenga, Simon Bernatz
2020 J jnl
Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma.
PLoS Comput. Biol.
Jennifer Hannig, Hendrik Schäfer, Jörg Ackermann, Marie Hebel, Tim Schäfer, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch
2019 J jnl
isiKnock: in silico knockouts in signaling pathways.
Bioinform.
Jennifer Hannig, Heiko Giese, Börje Schweizer, Leonie Amstein, Jörg Ackermann, Ina Koch
2017 J jnl
Manatee invariants reveal functional pathways in signaling networks.
BMC Syst. Biol.
Leonie Amstein, Jörg Ackermann, Jennifer Scheidel, Simone Fulda, Ivan Dikic, Ina Koch
2016 J jnl
APP Is a Context-Sensitive Regulator of the Hippocampal Presynaptic Active Zone.
PLoS Comput. Biol.
Melanie Laßek, Jens Weingarten, Martin Wegner, Benjamin F. Mueller, Marion Rohmer, Dominic Baeumlisberger, Tabiwang N. Arrey, Meike Hick, Jörg Ackermann, Amparo Acker-Palmer, Ina Koch, Ulrike Müller, Michael Karas, Walter Volknandt
2016 J jnl
CD30 cell graphs of Hodgkin lymphoma are not scale-free - an image analysis approach.
Bioinform.
Hendrik Schäfer, Tim Schäfer, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch
2016 J jnl
In Silico Knockout Studies of Xenophagic Capturing of Salmonella.
PLoS Comput. Biol.
Jennifer Scheidel, Leonie Amstein, Jörg Ackermann, Ivan Dikic, Ina Koch
2016 — ch.
Quantitative Analysis.
Modeling in Systems Biology, The Petri Net Approach
Jörg Ackermann, Ina Koch
2015 J jnl
Cluster analysis and visualization techniques for large datasets in complexome profiling.
PeerJ Prepr.
Heiko Giese, Jörg Ackermann, Ulrich Brandt, Ilka Wittig, Ina Koch
2015 J jnl
Erratum to: MONALISA for stochastic simulations of Petri net models of biochemical systems.
BMC Bioinform.
Pavel Balazki, Klaus Lindauer, Jens Einloft, Jörg Ackermann, Ina Koch
2015 J jnl
MONALISA for stochastic simulations of Petri net models of biochemical systems.
BMC Bioinform.
Pavel Balazki, Klaus Lindauer, Jens Einloft, Jörg Ackermann, Ina Koch
2015 J jnl
NOVA: a software to analyze complexome profiling data.
Bioinform.
Heiko Giese, Jörg Ackermann, Heinrich Heide, Lea Bleier, Stefan Dröse, Ilka Wittig, Ulrich Brandt, Ina Koch
2015 J jnl
Unsupervised image segmentation for microarray spots with irregular contours and inner holes.
BMC Bioinform.
Bogdan Belean, Monica Borda, Jörg Ackermann, Ina Koch, Ovidiu Balacescu
2013 J jnl
Image database analysis of Hodgkin lymphoma.
Comput. Biol. Chem.
Tim Schäfer, Hendrik Schäfer, Alexander Schmitz, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch
2013 J jnl
MonaLisa - visualization and analysis of functional modules in biochemical networks.
Bioinform.
Jens Einloft, Jörg Ackermann, Joachim Nöthen, Ina Koch
2008 J jnl
Petri net modelling of gene regulation of the Duchenne muscular dystrophy.
Biosyst.
Stefanie Grunwald, Astrid Speer, Jörg Ackermann, Ina Koch