Jérémie Bourdon

31 papers B 2Journal 19Unranked 7

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Boolean Network Models of Human Preimplantation Development. J. Comput. Biol. Mathieu Bolteau, Lokmane Chebouba, Laurent David, Jérémie Bourdon, Carito Guziolowski
2024	—	`conf`	Modelling Behavior of Microbiota Metabolic Network Subject to Diets. CARI Oumarou Abdou-Arbi, Jérémie Bourdon, Anne Siegel
2023	—	`conf`	Inferring Boolean Networks from Single-Cell Human Embryo Datasets. ISBRA Mathieu Bolteau, Jérémie Bourdon, Laurent David, Carito Guziolowski
2023	J	`jnl`	Predicting weighted unobserved nodes in a regulatory network using answer set programming. BMC Bioinform. Sophie Le Bars, Mathieu Bolteau, Jérémie Bourdon, Carito Guziolowski
2021	J	`jnl`	Large-scale regulatory and signaling network assembly through linked open data. Database J. Biol. Databases Curation Marie Lefebvre, Alban Gaignard, Maxime Folschette, Jérémie Bourdon, Carito Guziolowski
2020	J	`jnl`	Bayesian Integrative Modeling of Genome-Scale Metabolic and Regulatory Networks. Informatics Hanen Mhamdi, Jérémie Bourdon, Abdelhalim Larhlimi, Mourad Elloumi
2020	—	`conf`	Comparing Probabilistic and Logic Programming Approaches to Predict the Effects of Enzymes in a Neurodegenerative Disease Model. CMSB Sophie Le Bars, Jérémie Bourdon, Carito Guziolowski
2019	—	`ch.`	Logic and Linear Programs to Understand Cancer Response. Automated Reasoning for Systems Biology and Medicine Misbah Razzaq, Lokmane Chebouba, Pierre Le Jeune, Hanen Mhamdi, Carito Guziolowski, Jérémie Bourdon
2019	J	`jnl`	OpenComp3d: An open-source framework dedicated to design in power electronics. Math. Comput. Simul. A. Morentin, G. Fontes, M. Mannes-Hillesheim, Thierry Meynard, Didier Flumian, Jérémie Bourdon, Hubert Piquet
2018	J	`jnl`	Computational discovery of dynamic cell line specific Boolean networks from multiplex time-course data. PLoS Comput. Biol. Misbah Razzaq, Loïc Paulevé, Anne Siegel, Julio Saez-Rodriguez, Jérémie Bourdon, Carito Guziolowski
2018	—	`conf`	Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data. CMSB Misbah Razzaq, Roland Kaminski, Javier Romero, Torsten Schaub, Jérémie Bourdon, Carito Guziolowski
2017	J	`jnl`	A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks. J. Comput. Biol. Vincent Picard, Anne Siegel, Jérémie Bourdon
2017	J	`jnl`	Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Comput. Biol. Sylvain Prigent, Clémence Frioux, Simon M. Dittami, Sven Thiele, Abdelhalim Larhlimi, Guillaume Collet, Fabien Gutknecht, Jeanne Got, Damien Eveillard, Jérémie Bourdon, Frédéric Plewniak, Thierry Tonon, Anne Siegel
2016	J	`jnl`	Computational Methods in Systems Biology. Biosyst. Jérémie Bourdon, Olivier F. Roux
2015	—	`ed.`	Computational Methods in Systems Biology - 13th International Conference, CMSB 2015, Nantes, France, September 16-18, 2015, Proceedings CMSB Olivier F. Roux, Jérémie Bourdon
2015	—	`conf`	OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques. CMSB Marko Budinich, Jérémie Bourdon, Abdelhalim Larhlimi, Damien Eveillard
2014	J	`jnl`	A combinatorial approach to products of Pisot substitutions. CoRR Valérie Berthé, Jérémie Bourdon, Timo Jolivet, Anne Siegel
2014	J	`jnl`	Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs. BMC Syst. Biol. Oumarou Abdou-Arbi, Sophie Lemosquet, Jaap Van Milgen, Anne Siegel, Jérémie Bourdon
2014	J	`jnl`	Large deviation properties for patterns. J. Discrete Algorithms Jérémie Bourdon, Mireille Régnier
2014	—	`conf`	Multivariate Normal Approximation for the Stochastic Simulation Algorithm: Limit Theorem and Applications. SASB Vincent Picard, Anne Siegel, Jérémie Bourdon
2013	—	`conf`	Generating Discrete Planes with Substitutions. WORDS Valérie Berthé, Jérémie Bourdon, Timo Jolivet, Anne Siegel
2012	—	`book`	Sources Probabilistes: des séquences aux systèmes. (Probabilistic sources: from sequences to systems). Jérémie Bourdon
2011	J	`jnl`	Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network. PLoS Comput. Biol. Jérémie Bourdon, Damien Eveillard, Anne Siegel
2011	J	`jnl`	Statistical properties of factor oracles. J. Discrete Algorithms Jérémie Bourdon, Irena Rusu
2010	J	`jnl`	A Parallel Scheme for Comparing transcription Factor Binding Sites Matrices. J. Bioinform. Comput. Biol. Solenne Carat, Rémi Houlgatte, Jérémie Bourdon
2009	B	`conf`	Statistical Properties of Factor Oracles. CPM Jérémie Bourdon, Irena Rusu
2009	J	`jnl`	Temporal constraints of a gene regulatory network: Refining a qualitative simulation. Biosyst. Jamil Ahmad, Jérémie Bourdon, Damien Eveillard, Jonathan Fromentin, Olivier F. Roux, Christine Sinoquet
2006	B	`conf`	Pattern Matching Statistics on Correlated Sources. LATIN Jérémie Bourdon, Brigitte Vallée
2002	J	`jnl`	Dynamical analysis of alpha-Euclidean algorithms. J. Algorithms Jérémie Bourdon, Benoit Daireaux, Brigitte Vallée
2001	J	`jnl`	On the Stack-Size of General Tries. RAIRO Theor. Informatics Appl. Jérémie Bourdon, Markus E. Nebel, Brigitte Vallée
2001	J	`jnl`	Size and path length of Patricia tries: Dynamical sources context. Random Struct. Algorithms Jérémie Bourdon