Ján Manuch - RankMe

85 papers A* 1A 1B 19C 3Misc 5Journal 45Unranked 11

Year	Rank	Type	Title / Venue / Authors
2020	J	`jnl`	Approximate majority analyses using tri-molecular chemical reaction networks. Nat. Comput. Anne Condon, Monir Hajiaghayi, David G. Kirkpatrick, Ján Manuch
2020	J	`jnl`	Weak Coverage of a Rectangular Barrier. Algorithmica Stefan Dobrev, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Ján Manuch, Lata Narayanan, Jaroslav Opatrny, Ladislav Stacho
2017	J	`jnl`	Algorithms and Complexity Results for Genome Mapping Problems. IEEE ACM Trans. Comput. Biol. Bioinform. Ashok Rajaraman, João Paulo Pereira Zanetti, Ján Manuch, Cédric Chauve
2017	J	`jnl`	Combinatorial RNA Design: Designability and Structure-Approximating Algorithm in Watson-Crick and Nussinov-Jacobson Energy Models. Algorithmica Jozef Hales, Alice Héliou, Ján Manuch, Yann Ponty, Ladislav Stacho
2017	J	`jnl`	Design of nucleic acid strands with long low-barrier folding pathways. Nat. Comput. Anne Condon, Bonnie Kirkpatrick, Ján Manuch
2017	B	`conf`	Simplifying Analyses of Chemical Reaction Networks for Approximate Majority. DNA Anne Condon, Monir Hajiaghayi, David G. Kirkpatrick, Ján Manuch
2017	C	`conf`	Weak Coverage of a Rectangular Barrier. CIAC Stefan Dobrev, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Ján Manuch, Lata Narayanan, Jaroslav Opatrny, Sunil M. Shende, Ladislav Stacho
2017	J	`jnl`	Weak Coverage of a Rectangular Barrier. CoRR Stefan Dobrev, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Ján Manuch, Lata Narayanan, Jaroslav Opatrny, Ladislav Stacho
2016	J	`jnl`	Connectivity with directional antennas in the symmetric communication model. Comput. Geom. Stefan Dobrev, Mohsen Eftekhari Hesari, Fraser MacQuarie, Ján Manuch, Oscar Morales-Ponce, Lata Narayanan, Jaroslav Opatrny, Ladislav Stacho
2016	J	`jnl`	Pattern overlap implies runaway growth in hierarchical tile systems. J. Comput. Geom. David Doty, Ho-Lin Chen, Ján Manuch, Arash Rafiey, Ladislav Stacho
2015	B	`conf`	Combinatorial RNA Design: Designability and Structure-Approximating Algorithm. CPM Jozef Hales, Ján Manuch, Yann Ponty, Ladislav Stacho
2015	J	`jnl`	Combinatorial RNA Design: Designability and Structure-Approximating Algorithm. CoRR Jozef Hales, Ján Manuch, Yann Ponty, Ladislav Stacho
2015	J	`jnl`	Monitoring the Plane with Rotating Radars. Graphs Comb. Jurek Czyzowicz, Stefan Dobrev, Benson L. Joeris, Evangelos Kranakis, Danny Krizanc, Ján Manuch, Oscar Morales-Ponce, Jaroslav Opatrny, Ladislav Stacho, Jorge Urrutia
2015	J	`jnl`	Ordering with precedence constraints and budget minimization. CoRR Jeff Kinne, Ján Manuch, Akbar Rafiey, Arash Rafiey
2015	A*	`conf`	Pattern Overlap Implies Runaway Growth in Hierarchical Tile Systems. SoCG Ho-Lin Chen, David Doty, Ján Manuch, Arash Rafiey, Ladislav Stacho
2015	J	`jnl`	The complexity of string partitioning. J. Discrete Algorithms Anne Condon, Ján Manuch, Chris Thachuk
2014	J	`jnl`	Finding minimum Tucker submatrices. CoRR Ján Manuch, Arash Rafiey
2014	J	`jnl`	Pattern overlap implies runaway growth in hierarchical tile systems. CoRR Ho-Lin Chen, David Doty, Ján Manuch, Arash Rafiey, Ladislav Stacho
2014	J	`jnl`	Reachability bounds for chemical reaction networks and strand displacement systems. Nat. Comput. Anne Condon, Bonnie Kirkpatrick, Ján Manuch
2013	—	`conf`	Learning Polytrees with Constant Number of Roots from Data. Australasian Conference on Artificial Intelligence Javad Safaei, Ján Manuch, Ladislav Stacho
2013	C	`conf`	Linearization of ancestral multichromosomal genomes. CTW Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
2012	J	`jnl`	Algorithm for Haplotype Inference via Galled-Tree Networks with Simple Galls. J. Comput. Biol. Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao
2012	J	`jnl`	Hardness results on the gapped consecutive-ones property problem. Discret. Appl. Math. Ján Manuch, Murray Patterson, Cédric Chauve
2012	J	`jnl`	Linearization of ancestral multichromosomal genomes. BMC Bioinform. Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
2012	B	`conf`	Reachability Bounds for Chemical Reaction Networks and Strand Displacement Systems. DNA Anne Condon, Bonnie Kirkpatrick, Ján Manuch
2012	J	`jnl`	Step-wise tile assembly with a constant number of tile types. Nat. Comput. Ján Manuch, Ladislav Stacho, Christine Stoll
2012	B	`conf`	The Complexity of String Partitioning. CPM Anne Condon, Ján Manuch, Chris Thachuk
2012	J	`jnl`	The complexity of string partitioning CoRR Anne Condon, Ján Manuch, Chris Thachuk
2012	B	`conf`	Turing Universality of Step-Wise and Stage Assembly at Temperature 1. DNA Bahar Behsaz, Ján Manuch, Ladislav Stacho
2011	J	`jnl`	Consistency of Sequence-Based Gene Clusters. J. Comput. Biol. Roland Wittler, Ján Manuch, Murray Patterson, Jens Stoye
2011	—	`conf`	Evolutionary Conservation of Human Phosphorylation Sites. BIBM Javad Safaei, Ján Manuch, Arvind Gupta, Ladislav Stacho, Steven Pelech
2011	B	`conf`	Less Haste, Less Waste: On Recycling and Its Limits in Strand Displacement Systems. DNA Anne Condon, Alan J. Hu, Ján Manuch, Chris Thachuk
2011	J	`jnl`	NP-completeness of the energy barrier problem without pseudoknots and temporary arcs. Nat. Comput. Ján Manuch, Chris Thachuk, Ladislav Stacho, Anne Condon
2011	J	`jnl`	The Complexity of the Gapped Consecutive-Ones Property Problem for Matrices of Bounded Maximum Degree. J. Comput. Biol. Ján Manuch, Murray Patterson
2011	—	`conf`	Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees. ISBRA Ján Manuch, Murray Patterson, Arvind Gupta
2011	B	`conf`	Tractability Results for the Consecutive-Ones Property with Multiplicity. CPM Cédric Chauve, Ján Manuch, Murray Patterson, Roland Wittler
2010	Misc	`conf`	An Algorithm for the Energy Barrier Problem Without Pseudoknots and Temporary Arcs. Pacific Symposium on Biocomputing Chris Thachuk, Ján Manuch, Arash Rafiey, Leigh-Anne Mathieson, Ladislav Stacho, Anne Condon
2010	A	`conf`	Complexity of Finding Non-Planar Rectilinear Drawings of Graphs. GD Ján Manuch, Murray Patterson, Sheung-Hung Poon, Chris Thachuk
2010	J	`jnl`	Haplotype Inferring via Galled-Tree Networks Is NP-Complete. J. Comput. Biol. Arvind Gupta, Mohammad M. Karimi, Ján Manuch, Ladislav Stacho, Xiaohong Zhao
2010	—	`conf`	Prediction of human protein kinase substrate specificities. BIBM Javad Safaei, Ján Manuch, Arvind Gupta, Ladislav Stacho, Steven Pelech
2010	—	`conf`	The Complexity of the Gapped Consecutive-Ones Property Problem for Matrices of Bounded Maximum Degree. RECOMB-CG Ján Manuch, Murray Patterson
2010	J	`jnl`	Two Lower Bounds for Self-Assemblies at Temperature 1. J. Comput. Biol. Ján Manuch, Ladislav Stacho, Christine Stoll
2009	J	`jnl`	Haplotype inferring via galled-tree networks using a hypergraph covering problem for special genotype matrices. Discret. Appl. Math. Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao
2009	J	`jnl`	Hardness Results for the Gapped Consecutive-Ones Property CoRR Cédric Chauve, Ján Manuch, Murray Patterson
2009	J	`jnl`	Inverse Protein Folding in 3D Hexagonal Prism Lattice under HPC Model. J. Comput. Biol. Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta
2009	B	`conf`	NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots. DNA Ján Manuch, Chris Thachuk, Ladislav Stacho, Anne Condon
2009	J	`jnl`	On the Gapped Consecutive-Ones Property. Electron. Notes Discret. Math. Cédric Chauve, Ján Manuch, Murray Patterson
2009	Misc	`conf`	On the Generalised Character Compatibility Problem for Non-branching Character Trees. COCOON Ján Manuch, Murray Patterson, Arvind Gupta
2009	J	`jnl`	Spanning cubic graph designs. Discret. Math. Peter Adams, Hayri Ardal, Ján Manuch, Vu Dinh Hoa, Moshe Rosenfeld, Ladislav Stacho
2009	J	`jnl`	Stable Structure-Approximating Inverse Protein Folding in 2D Hydrophobic-Polar-Cysteine (HPC) Model. J. Comput. Biol. Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta
2009	B	`conf`	Step-Assembly with a Constant Number of Tile Types. ISAAC Ján Manuch, Ladislav Stacho, Christine Stoll
2009	J	`jnl`	The Odd-Distance Plane Graph. Discret. Comput. Geom. Hayri Ardal, Ján Manuch, Moshe Rosenfeld, Saharon Shelah, Ladislav Stacho
2009	Misc	`conf`	Two lower bounds for self-assemblies at temperature 1. SAC Ján Manuch, Ladislav Stacho, Christine Stoll
2008	—	`conf`	A Robust Class of Stable Proteins in the 2D HPC Model. BIRD Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta
2008	Misc	`conf`	Complexity of a Collision-Aware String Partition Problem and Its Relation to Oligo Design for Gene Synthesis. COCOON Anne Condon, Ján Manuch, Chris Thachuk
2008	J	`jnl`	Fitting protein Chains to cubic Lattice is NP-Complete. J. Bioinform. Comput. Biol. Ján Manuch, Daya Ram Gaur
2008	Misc	`conf`	Haplotype Inferring Via Galled-Tree Networks Is NP-Complete. COCOON Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao
2008	—	`conf`	Inverse protein folding in 3D hexagonal prism lattice under HP model. BIOCOMP Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta
2008	J	`jnl`	On the Complexity of Ordered Colorings. SIAM J. Discret. Math. Arvind Gupta, Jan van den Heuvel, Ján Manuch, Ladislav Stacho, Xiaohong Zhao
2008	B	`conf`	Structure-Approximating Design of Stable Proteins in 2D HP Model Fortified by Cysteine Monomers. APBC Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta
2007	—	`conf`	Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple Galls. ISBRA Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao
2007	—	`conf`	Design of Artificial Tubular Protein Structures in 3D Hexagonal Prism Lattice Under HP Model. BIOCOMP Arvind Gupta, Mehdi Karimi, Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey
2007	B	`conf`	Fitting Protein Chains to Cubic Lattice is NP-Complete. APBC Ján Manuch, Daya Ram Gaur
2006	B	`conf`	Characterization of the Existence of Galled-Tree Networks. APBC Ján Manuch, Xiaohong Zhao, Ladislav Stacho, Arvind Gupta
2006	J	`jnl`	Characterization of the Existence of Galled-tree Networks. J. Bioinform. Comput. Biol. Arvind Gupta, Ján Manuch, Xiaohong Zhao, Ladislav Stacho
2006	B	`conf`	Constructing Camin-Sokal Phylogenies Via Answer Set Programming. LPAR Jonathan Kavanagh, David G. Mitchell, Eugenia Ternovska, Ján Manuch, Xiaohong Zhao, Arvind Gupta
2006	—	`conf`	Improved Approximation Algorithm for Scheduling Tasks with a Choice of Start Times. ACiD Daya Ram Gaur, Ramesh Krishnamurti, Ján Manuch
2005	J	`jnl`	(quasi) Spanners for Mobile Ad Hoc Networks. J. Interconnect. Networks Petra Berenbrink, Tom Friedetzky, Ján Manuch, Ladislav Stacho
2005	J	`jnl`	Ordered 3-colorings. Electron. Notes Discret. Math. Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao
2005	J	`jnl`	Structure-Approximating Inverse Protein Folding Problem in the 2D HP Model. J. Comput. Biol. Arvind Gupta, Ján Manuch, Ladislav Stacho
2004	B	`conf`	Fault Tolerant Forwarding and Optical Indexes: A Design Theory Approach. SIROCCO Arvind Gupta, Ján Manuch, Ladislav Stacho
2004	—	`conf`	Inverse Protein Folding in 2D HP Mode (Extended Abstract). CSB Arvind Gupta, Ján Manuch, Ladislav Stacho
2004	B	`conf`	Small Phylogeny Problem: Character Evolution Trees. CPM Arvind Gupta, Ján Manuch, Ladislav Stacho, Chenchen Zhu
2003	J	`jnl`	A defect theorem for bi-infinite words. Theor. Comput. Sci. Juhani Karhumäki, Ján Manuch, Wojciech Plandowski
2003	J	`jnl`	On f-wise Arc Forwarding Index and Wavelength Allocations in Faulty All-optical Hypercubes. RAIRO Theor. Informatics Appl. Ján Manuch, Ladislav Stacho
2003	J	`jnl`	On the computational complexity of infinite words. Theor. Comput. Sci. Pavol Duris, Ján Manuch
2002	J	`jnl`	Multiple factorizations of words and defect effect. Theor. Comput. Sci. Juhani Karhumäki, Ján Manuch
2001	J	`jnl`	Defect Effect of Bi-infinite Words in the Two-element Case. Discret. Math. Theor. Comput. Sci. Ján Manuch
2001	J	`jnl`	On Conjugacy of Languages. RAIRO Theor. Informatics Appl. Julien Cassaigne, Juhani Karhumäki, Ján Manuch
2001	B	`conf`	On the Computational Complexity of Infinite Words. MFCS Pavol Duris, Ján Manuch
2000	J	`jnl`	Construction of very hard functions for multiparty communication complexity. RAIRO Theor. Informatics Appl. Ján Manuch
1999	C	`conf`	Characterization of a word by its subwords. Developments in Language Theory Ján Manuch
1999	B	`conf`	Fault-Tolerant Wavelength Allocations in All-optical Hypercubes. SIROCCO Ján Manuch, Ladislav Stacho
1999	B	`conf`	Multiparty Communication Complexity: Very Hard Functions. MFCS Ján Manuch
1998	B	`conf`	On Defect Effect of Bi-Infinite Words. MFCS Juhani Karhumäki, Ján Manuch, Wojciech Plandowski