Jyotishman Pathak

191 papers A* 1A 4B 8Misc 64Journal 60Unranked 52
YearRankTypeTitle / Venue / Authors
2025 J jnl
Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model.
J. Am. Medical Informatics Assoc.
Braja Gopal Patra, Lauren A. Lepow, Praneet Kasi Reddy Jagadeesh Kumar, Veer Vekaria, Mohit Manoj Sharma, Prakash Adekkanattu, Brian Fennessy, Gavin Hynes, Isotta Landi, Jorge A. Sanchez-Ruiz, Euijung Ryu, Joanna M. Biernacka, Girish N. Nadkarni, Ardesheer Talati, Myrna Weissman, Mark Olfson, J. John Mann, Yiye Zhang, Alexander W. Charney, Jyotishman Pathak
2024 — conf
Analyzing Social Factors to Enhance Suicide Prevention Across Population Groups.
ICHI
Richard Li Xu, Song Wang, Zewei Wang, Yuhan Zhang, Yunyu Xiao, Jyotishman Pathak, David Hodge, Yan Leng, S. Craig Watkins, Ying Ding, Yifan Peng
2024 J jnl
Deep learning for identifying personal and family history of suicidal thoughts and behaviors from EHRs.
npj Digit. Medicine
Prakash Adekkanattu, Al'ona Furmanchuk, Yonghui Wu, Aman Pathak, Braja Gopal Patra, Sarah Bost, Destinee Morrow, Grace Hsin-Min Wang, Yuyang Yang, Noah James Forrest, Yuan Luo, Theresa L. Walunas, Wei-Hsuan Lo-Ciganic, Walid Gelad, Jiang Bian, Yuhua Bao, Mark G. Weiner, David W. Oslin, Jyotishman Pathak
2024 J jnl
Differing perspectives on artificial intelligence in mental healthcare among patients: a cross-sectional survey study.
Frontiers Digit. Health
Meghan Reading Turchioe, Pooja M. Desai, Sarah Harkins, Jessica Kim, Shiveen Kumar, Yiye Zhang, Rochelle Joly, Jyotishman Pathak, Alison Hermann, Natalie C. Benda
2024 J jnl
Extracting Social Support and Social Isolation Information from Clinical Psychiatry Notes: Comparing a Rule-based NLP System and a Large Language Model.
CoRR
Braja Gopal Patra, Lauren A. Lepow, Praneet Kasi Reddy Jagadeesh Kumar, Veer Vekaria, Mohit Manoj Sharma, Prakash Adekkanattu, Brian Fennessy, Gavin Hynes, Isotta Landi, Jorge A. Sanchez-Ruiz, Euijung Ryu, Joanna M. Biernacka, Girish N. Nadkarni, Ardesheer Talati, Myrna Weissman, Mark Olfson, J. John Mann, Alexander W. Charney, Jyotishman Pathak
2024 J jnl
Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias.
J. Biomed. Informatics
Zehao Yu, Cheng Peng, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2024 J jnl
Preparing for the bedside - optimizing a postpartum depression risk prediction model for clinical implementation in a health system.
J. Am. Medical Informatics Assoc.
Yifan Liu, Rochelle Joly, Meghan Reading Turchioe, Natalie C. Benda, Alison Hermann, Ashley Beecy, Jyotishman Pathak, Yiye Zhang
2024 J jnl
Visualizing machine learning-based predictions of postpartum depression risk for lay audiences.
J. Am. Medical Informatics Assoc.
Pooja M. Desai, Sarah Harkins, Saanjaana Rahman, Shiveen Kumar, Alison Hermann, Rochelle Joly, Yiye Zhang, Jyotishman Pathak, Jessica Kim, Deborah D'angelo, Natalie C. Benda, Meghan Reading Turchioe
2023 J jnl
AD-BERT: Using pre-trained language model to predict the progression from mild cognitive impairment to Alzheimer's disease.
J. Biomed. Informatics
Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer A. Pacheco, Borna Bonakdarpour, Robert Vassar, Li Shen, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo
2023 J jnl
An NLP approach to identify SDoH-related circumstance and suicide crisis from death investigation narratives.
J. Am. Medical Informatics Assoc.
Song Wang, Yifang Dang, Zhaoyi Sun, Ying Ding, Jyotishman Pathak, Cui Tao, Yunyu Xiao, Yifan Peng
2023 J jnl
Characterizing variability of electronic health record-driven phenotype definitions.
J. Am. Medical Informatics Assoc.
Pascal S. Brandt, Abel N. Kho, Yuan Luo, Jennifer A. Pacheco, Theresa L. Walunas, Hakon Hakonarson, George Hripcsak, Cong Liu, Ning Shang, Chunhua Weng, Nephi Walton, David S. Carrell, Paul K. Crane, Eric B. Larson, Christopher G. Chute, Iftikhar J. Kullo, Robert J. Carroll, Joshua C. Denny, Andrea H. Ramirez, Wei-Qi Wei, Jyotishman Pathak, Laura K. Wiley, Rachel L. Richesson, Justin B. Starren, Luke V. Rasmussen
2023 B conf
CoRL: A Cost-Responsive Learning Optimizer for Neural Networks.
SMC
Reshma Kar, Vijay Kumar Reddy Voddi, Braja Gopal Patra, Jyotishman Pathak
2022 J jnl
AD-BERT: Using Pre-trained contextualized embeddings to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease.
CoRR
Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer A. Pacheco, Borna Bonakdarpour, Robert Vassar, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo
2022 J jnl
An architecture for research computing in health to support clinical and translational investigators with electronic patient data.
J. Am. Medical Informatics Assoc.
Thomas R. Campion Jr., Evan Sholle, Jyotishman Pathak, Stephen B. Johnson, John P. Leonard, Curtis L. Cole
2022 J jnl
Design and validation of a FHIR-based EHR-driven phenotyping toolbox.
J. Am. Medical Informatics Assoc.
Pascal S. Brandt, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Sajjad Abedian, Daniel J. Stone, David Knaack, Jie Xu, Zhenxing Xu, Yifan Peng, Natalie C. Benda, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
2022 Misc conf
Developing a disease-specific symptom vocabulary for natural language processing.
AMIA
Meghan Reading Turchioe, Winston Guo, Alexander Volodarskiy, Brittany Taylor, Mollie Hobensack, David Slotwiner, Jyotishman Pathak
2022 J jnl
SODA: A Natural Language Processing Package to Extract Social Determinants of Health for Cancer Studies.
CoRR
Zehao Yu, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021 Misc conf
A Deep Learning Framework Using a Pre-trained BERT Model to Predict the Risk of Progression from Mild Cognitive Impairment to Alzheimer's Disease.
AMIA
Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Fei Wang, Richard Isaacson, Jyotishman Pathak, Yuan Luo
2021 Misc conf
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models.
AMIA
Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021 J jnl
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models.
CoRR
Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021 J jnl
Characterization of Time-variant and Time-invariant Assessment of Suicidality on Reddit using C-SSRS.
CoRR
Manas Gaur, Vamsi Aribandi, Amanuel Alambo, Ugur Kursuncu, Krishnaprasad Thirunarayan, Jonanthan Beich, Jyotishman Pathak, Amit P. Sheth
2021 Misc conf
Deep Significance Clustering (DICE) a Heterogenous Population.
AMIA
Yufang Huang, Yifan Liu, Peter A. D. Steel, Kelly M. Axsom, John R. Lee, Sri Lekha Tummalapalli, Alison Hermann, Rochelle Joly, Fei Wang, Jyotishman Pathak, Lakshminarayanan Subramanian, Yiye Zhang
2021 J jnl
Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups.
J. Am. Medical Informatics Assoc.
Yufang Huang, Yifan Liu, Peter A. D. Steel, Kelly M. Axsom, John R. Lee, Sri Lekha Tummalapalli, Fei Wang, Jyotishman Pathak, Lakshminarayanan Subramanian, Yiye Zhang
2021 Misc conf
Extracting Social Isolation Information From Psychiatric Notes in the Electronic Health Records.
AMIA
Lauren A. Lepow, Braja Gopal Patra, Isotta Landi, Prakash Adekkanattu, Jyotishman Pathak, Mark Olfson, J. John Mann, Euijung Ryu, Joanna M. Biernacka, Girish N. Nadkarni, Priya Wickramaratne, Myrna Weissman, Benjamin S. Glicksberg, Alexander Charney
2021 J jnl
Extracting social determinants of health from electronic health records using natural language processing: a systematic review.
J. Am. Medical Informatics Assoc.
Braja Gopal Patra, Mohit Manoj Sharma, Veer Vekaria, Prakash Adekkanattu, Olga V. Patterson, Benjamin S. Glicksberg, Lauren A. Lepow, Euijung Ryu, Joanna M. Biernacka, Al'ona Furmanchuk, Thomas J. George, William R. Hogan, Yonghui Wu, Xi Yang, Jiang Bian, Myrna Weissman, Priya Wickramaratne, J. John Mann, Mark Olfson, Thomas R. Campion Jr., Mark G. Weiner, Jyotishman Pathak
2021 Misc conf
FHIRTime: Standardizing Temporal Patterns Identified from Clinical Narratives Using HL7 FHIR.
AMIA
Daniel J. Stone, Sijia Liu, Yuan Luo, Andrew Wen, Nansu Zong, Luke V. Rasmussen, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Fei Wang, Cui Tao, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang
2021 Misc conf
Multi-site Evaluation of Longitudinal Changes in Ejection Fraction in Heart Failure Patients Through Data-driven Phenotyping.
AMIA
Prakash Adekkanattu, Jennifer A. Pacheco, Joseph Kabariti, Daniel J. Stone, Yue Yu, Parag Goyal, Faraz S. Ahmad, Guoqian Jiang, Yuan Luo, Luke V. Rasmussen, Pascal S. Brandt, Zhenxing Xu, Jie Xu, Fei Wang, Natalie C. Benda, Thomas R. Campion Jr., Jyotishman Pathak
2021 Misc conf
On Constraints and Considerations for Extending Support for Natural Language Processing-Based FHIR Resource Generation.
AMIA
Andrew Wen, Luke V. Rasmussen, Daniel J. Stone, Sijia Liu, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Yuan Luo, Fei Wang, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang
2021 Misc conf
Prescribing Pharmacogenomics Testing: Analyzing the Acceptance of Healthcare Providers through a Survey Study.
AMIA
Mohit Manoj Sharma, Yonaka Harris, Yiye Zhang, Jyotishman Pathak
2021 Misc conf
Supporting EHR-based Cohort Discovery Through User-centered Design: Results of an Early Formative Usability Study.
AMIA
Natalie C. Benda, Pascal S. Brandt, Jessica S. Ancker, Jennifer A. Pacheco, Prakash Adekkanattu, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
2020 J jnl
A Machine Learning Approach to Detect Suicidal Ideation in US Veterans Based on Acoustic and Linguistic Features of Speech.
CoRR
Vaibhav Sourirajan, Anas Belouali, Mary Ann Dutton, Matthew J. Reinhard, Jyotishman Pathak
2020 J jnl
Comparing Suicide Risk Insights derived from Clinical and Social Media data.
CoRR
Rohith K. Thiruvalluru, Manas Gaur, Krishnaprasad Thirunarayan, Amit P. Sheth, Jyotishman Pathak
2020 Misc conf
Evaluating Commercially Available Mobile Apps for Depression Self-Management.
AMIA
Annie C. Myers, Lewis Chesebrough, Ruixuan Hu, Meghan Reading Turchioe, Jyotishman Pathak, Ruth Masterson Creber
2020 Misc conf
Feasibility of Cross-Platform EHR-Driven Phenotyping Using Clinical Quality Language.
AMIA
Pascal S. Brandt, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Faraz S. Ahmad, Jie Xu, Zhenxing Xu, Jessica S. Ancker, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
2020 Misc conf
Healthcare Contacts Among Patients with Psychiatric Hospitalization Admitted Through the Emergency Department.
AMIA
Wenna Xi, Samprit Banerjee, Robert B. Penfold, Gregory E. Simon, George Alexopoulos, Jyotishman Pathak
2020 Misc conf
Identification of Alzheimer's Disease Subtypes from Electronic Health Records Using a Data-Driven Approach.
AMIA
Jie Xu, Fei Wang, Zhenxing Xu, Prakash Adekkanattu, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Yuan Luo, Chengsheng Mao, Jennifer A. Pacheco, Luke V. Rasmussen, Yiye Zhang, Richard Isaacson, Jyotishman Pathak
2020 J jnl
Identifying sub-phenotypes of acute kidney injury using structured and unstructured electronic health record data with memory networks.
J. Biomed. Informatics
Zhenxing Xu, Jingyuan Chou, Xi Sheryl Zhang, Yuan Luo, Tamara Isakova, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang
2020 Misc conf
Provider perspectives on the clinical utility of using a risk prediction tool for postpartum depression.
AMIA
Annie C. Myers, Fariha Ahsan, Rochelle Joly, Alison Hermann, Yiye Zhang, Michael Laskoff, Jyotishman Pathak, Meghan Reading Turchioe
2020 Misc conf
Visual Rating Scales for Patient-Reported Outcome Measurement: A National Validation Study.
AMIA
Lisa Grossman Liu, Meghan Reading Turchioe, Annie C. Myers, Jyotishman Pathak, David K. Vawdrey, Ruth Masterson Creber
2020 Misc conf
Weak Supervision to Classify Unstructured Clinical Text for Current Suicidal Ideation.
AMIA
Marika M. Cusick, Prakash Adekkanattu, Thomas R. Campion Jr., Evan Sholle, Annie C. Myers, George Alexopoulos, Jyotishman Pathak
2019 Misc conf
A Survey of Clinicians' Perception of Pharmacogenomics Testing for Antidepressants.
AMIA
Yiye Zhang, Yonaka Harris, George Alexopoulos, Adam Stracher, Elizabeth Ross, Rainu Kaushal, Jyotishman Pathak
2019 Misc conf
Collecting Individual-Level Social Determinants of Health to Inform Patient-Centered Outcomes Research in Mental Health.
AMIA
Joseph J. DeFerio, Annie C. Myers, John M. Meddar, Judith Cukor, Jyotishman Pathak
2019 Misc conf
Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms.
AMIA
Luke V. Rasmussen, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Jessica S. Ancker, Fei Wang, Zhenxing Xu, Jyotishman Pathak, Yuan Luo
2019 J jnl
Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries.
J. Biomed. Informatics
Na Hong, Andrew Wen, Daniel J. Stone, Shintaro Tsuji, Paul R. Kingsbury, Luke V. Rasmussen, Jennifer A. Pacheco, Prakash Adekkanattu, Fei Wang, Yuan Luo, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang
2019 J jnl
Developing a portable natural language processing based phenotyping system.
BMC Medical Informatics Decis. Mak.
Himanshu Sharma, Chengsheng Mao, Yizhen Zhang, Haleh Vatani, Liang Yao, Yizhen Zhong, Luke V. Rasmussen, Guoqian Jiang, Jyotishman Pathak, Yuan Luo
2019 J jnl
Drug knowledge bases and their applications in biomedical informatics research.
Briefings Bioinform.
Yongjun Zhu, Olivier Elemento, Jyotishman Pathak, Fei Wang
2019 Misc conf
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study.
AMIA
Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhenxing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion Jr., Jyotishman Pathak
2019 J jnl
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study.
CoRR
Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhenxing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion Jr., Jyotishman Pathak
2019 J jnl
Fusing Visual, Textual and Connectivity Clues for Studying Mental Health.
CoRR
Amir Hossein Yazdavar, Mohammad Saeid Mahdavinejad, Goonmeet Bajaj, William L. Romine, Amirhassan Monadjemi, Krishnaprasad Thirunarayan, Amit P. Sheth, Jyotishman Pathak
2019 J jnl
Identification of Predictive Sub-Phenotypes of Acute Kidney Injury using Structured and Unstructured Electronic Health Record Data with Memory Networks.
CoRR
Zhenxing Xu, Jingyuan Chou, Xi Sheryl Zhang, Yuan Luo, Tamara Isakova, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang
2019 A* conf
Knowledge-aware Assessment of Severity of Suicide Risk for Early Intervention.
WWW
Manas Gaur, Amanuel Alambo, Joy Prakash Sain, Ugur Kursuncu, Krishnaprasad Thirunarayan, Ramakanth Kavuluru, Amit P. Sheth, Randy S. Welton, Jyotishman Pathak
2019 — conf
Question Answering for Suicide Risk Assessment Using Reddit.
ICSC
Amanuel Alambo, Manas Gaur, Usha Lokala, Ugur Kursuncu, Krishnaprasad Thirunarayan, Amelie Gyrard, Amit P. Sheth, Randon S. Welton, Jyotishman Pathak
2019 J jnl
Social determinants of health in mental health care and research: a case for greater inclusion.
J. Am. Medical Informatics Assoc.
Joseph J. DeFerio, Scott Breitinger, Dhruv Khullar, Amit P. Sheth, Jyotishman Pathak
2019 — conf
Stratified Mortality Prediction of Patients with Acute Kidney Injury in Critical Care.
MedInfo
Zhenxing Xu, Yuan Luo, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang
2019 J jnl
Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation.
J. Am. Medical Informatics Assoc.
Evan Sholle, Laura C. Pinheiro, Prakash Adekkanattu, Marcos Davila, Stephen B. Johnson, Jyotishman Pathak, Sanjai Sinha, Cassidie Li, Stasi A. Lubansky, Monika M. Safford, Thomas R. Campion Jr.
2019 — conf
Using Electronic Health Records and Machine Learning to Predict Postpartum Depression.
MedInfo
Shuojia Wang, Jyotishman Pathak, Yiye Zhang
2019 Misc conf
Using Social Media to Study Mental Health Conditions - Challenges and Opportunities.
AMIA
Vasa Curcin, Elizabeth Ford, Jyotishman Pathak, Goran Nenadic
2019 Misc conf
Validation of a Computable Phenotype for Site-Specific Cancer Treatment.
AMIA
Evan Sholle, Orrin Belden, Jaclyn Rosenzweig, Jennifer Levine, Joseph Kabariti, Thomas R. Campion Jr., Jyotishman Pathak
2018 A conf
"Let Me Tell You About Your Mental Health!": Contextualized Classification of Reddit Posts to DSM-5 for Web-based Intervention.
CIKM
Manas Gaur, Ugur Kursuncu, Amanuel Alambo, Amit P. Sheth, Raminta Daniulaityte, Krishnaprasad Thirunarayan, Jyotishman Pathak
2018 J jnl
A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments.
J. Am. Medical Informatics Assoc.
Jennifer A. Pacheco, Luke V. Rasmussen, Richard C. Kiefer, Thomas R. Campion Jr., Peter Speltz, Robert J. Carroll, Sarah C. Stallings, Huan Mo, Monika Ahuja, Guoqian Jiang, Eric R. LaRose, Peggy L. Peissig, Ning Shang, Barbara Benoit, Vivian S. Gainer, Kenneth Borthwick, Kathryn L. Jackson, Ambrish Sharma, Andy Yizhou Wu, Abel N. Kho, Dan M. Roden, Jyotishman Pathak, Joshua C. Denny, William K. Thompson
2018 Misc conf
Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes.
AMIA
Prakash Adekkanattu, Evan Sholle, Joseph J. DeFerio, Jyotishman Pathak, Stephen B. Johnson, Thomas R. Campion Jr.
2018 J jnl
Association networks in a matched case-control design - Co-occurrence patterns of preexisting chronic medical conditions in patients with major depression versus their matched controls.
J. Biomed. Informatics
Min-hyung Kim, Samprit Banerjee, Yize Zhao, Fei Wang, Yiye Zhang, Yongjun Zhu, Joseph DeFerio, Lauren Evans, Sang Min Park, Jyotishman Pathak
2018 — conf
Comparing Sex-Specific Association Networks of Chronic Medical Conditions.
ICHI
Min-hyung Kim, Yongjun Zhu, Samprit Banerjee, Lauren Evans, Yiye Zhang, Fei Wang, Sang Min Park, Jyotishman Pathak
2018 J jnl
Developing a Portable Natural Language Processing Based Phenotyping System.
CoRR
Himanshu Sharma, Chengsheng Mao, Yizhen Zhang, Haleh Vatani, Liang Yao, Yizhen Zhong, Luke V. Rasmussen, Guoqian Jiang, Jyotishman Pathak, Yuan Luo
2018 — conf
Mental Health Analysis Via Social Media Data.
ICHI
Amir Hossein Yazdavar, Mohammad Saeid Mahdavinejad, Goonmeet Bajaj, Krishnaprasad Thirunarayan, Jyotishman Pathak, Amit P. Sheth
2018 Misc conf
Methods for Integrating EHRs, Social Determinants of Health, and Built Environment Data for Patient-Centered Research.
AMIA
Joseph J. DeFerio, Evan Sholle, Kathleen Lee, Jyotishman Pathak
2018 — conf
Portable Phenotyping System: A Portable Machine-Learning Approach to i2b2 Obesity Challenge.
ICHI Workshops
Himanshu Sharma, Chengsheng Mao, Yizhen Zhang, Haleh Vatani, Liang Yao, Yizhen Zhong, Luke V. Rasmussen, Guoqian Jiang, Jyotishman Pathak, Yuan Luo
2018 J jnl
The potential value of social determinants of health in predicting health outcomes.
J. Am. Medical Informatics Assoc.
Jessica S. Ancker, Min-hyung Kim, Yiye Zhang, Yongkang Zhang, Jyotishman Pathak
2018 Misc conf
Using EHRs to assess gender differences in the utilization of mental health services for patients diagnosed with major depression.
AMIA
Cody M. Phelps, Trisha R. Sanghvi, Ningrui Zhang, Joseph J. DeFerio, Jyotishman Pathak
2017 Misc conf
A Framework for Data Quality Assessment in Clinical Research Datasets.
AMIA
Kathleen Lee, Nicole Gray Weiskopf, Jyotishman Pathak
2017 — conf
D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization.
CRI
Deepak K. Sharma, Harold R. Solbrig, Eric Prud'hommeaux, Kathleen Lee, Jyotishman Pathak, Guoqian Jiang
2017 Misc conf
Leveraging Value Sets from the Value Set Authority Center (VSAC) in a Standards-Based Clinical Data Repository.
AMIA
Richard C. Kiefer, Luke V. Rasmussen, Jennifer A. Pacheco, Peter Speltz, Joshua C. Denny, William K. Thompson, Jyotishman Pathak, Guoqian Jiang
2017 — conf
Multitask LS-Svm for Predicting Bleeding and Re-operation Due to Bleeding.
ICHI
Che Ngufor, Dennis H. Murphree, Sudhindra Upadhyaya, Jyotishman Pathak, Daryl J. Kor
2017 A conf
Polyadic Regression and its Application to Chemogenomics.
SDM
Ioakeim Perros, Fei Wang, Ping Zhang, Peter B. Walker, Richard W. Vuduc, Jyotishman Pathak, Jimeng Sun
2017 Misc conf
Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers.
AMIA
Evan Sholle, Joseph Kabariti, Stephen B. Johnson, John P. Leonard, Jyotishman Pathak, Vinay I. Varughese, Curtis L. Cole, Thomas R. Campion Jr.
2017 B conf
Semi-Supervised Approach to Monitoring Clinical Depressive Symptoms in Social Media.
ASONAM
Amir Hossein Yazdavar, Hussein S. Al-Olimat, Monireh Ebrahimi, Goonmeet Bajaj, Tanvi Banerjee, Krishnaprasad Thirunarayan, Jyotishman Pathak, Amit P. Sheth
2017 J jnl
Semi-Supervised Approach to Monitoring Clinical Depressive Symptoms in Social Media.
CoRR
Amir Hossein Yazdavar, Hussein S. Al-Olimat, Monireh Ebrahimi, Goonmeet Bajaj, Tanvi Banerjee, Krishnaprasad Thirunarayan, Jyotishman Pathak, Amit P. Sheth
2017 — conf
Temporal reflected logistic regression for probabilistic heart failure survival score prediction.
BIBM
Mingjie Qian, Jyotishman Pathak, Naveen L. Pereira, ChengXiang Zhai
2017 Misc conf
The Phenotype Execution and Modeling Architecture: A Roadmap Towards Next-generation Phenotyping Using EHRs.
AMIA
Peter Speltz, Luke V. Rasmussen, Richard C. Kiefer, Jennifer A. Pacheco, William K. Thompson, Guoqian Jiang, Jyotishman Pathak, Joshua C. Denny
2016 — conf
A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform.
CRI
Huan Mo, Guoqian Jiang, Jennifer A. Pacheco, Richard C. Kiefer, Luke V. Rasmussen, Jyotishman Pathak, Joshua C. Denny, William K. Thompson
2016 Misc conf
An NLP Extension to the Quality Data Model for EHR-Driven Phenotype Algorithm Authoring and Execution.
AMIA
Guoqian Jiang, William K. Thompson, Luke V. Rasmussen, Richard C. Kiefer, Jennifer A. Pacheco, Huan Mo, Peter Speltz, Joshua C. Denny, Jyotishman Pathak
2016 J jnl
Clinical phenotyping in selected national networks: demonstrating the need for high-throughput, portable, and computational methods.
Artif. Intell. Medicine
Rachel L. Richesson, Jimeng Sun, Jyotishman Pathak, Abel N. Kho, Joshua C. Denny
2016 J jnl
Developing EHR-driven heart failure risk prediction models using CPXR(Log) with the probabilistic loss function.
J. Biomed. Informatics
Vahid Taslimitehrani, Guozhu Dong, Naveen L. Pereira, Maryam Panahiazar, Jyotishman Pathak
2016 J jnl
Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution.
J. Biomed. Informatics
Guoqian Jiang, Richard C. Kiefer, Luke V. Rasmussen, Harold R. Solbrig, Huan Mo, Jennifer A. Pacheco, Jie Xu, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak
2016 J jnl
Developing a modular architecture for creation of rule-based clinical diagnostic criteria.
BioData Min.
Na Hong, Jyotishman Pathak, Christopher G. Chute, Guoqian Jiang
2016 Misc conf
Improving risk prediction for depression via Elastic Net regression - Results from Korea National Health Insurance Services Data.
AMIA
Min-hyung Kim, Samprit Banerjee, Sang Min Park, Jyotishman Pathak
2016 J jnl
PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability.
J. Am. Medical Informatics Assoc.
Jacqueline Kirby, Peter Speltz, Luke V. Rasmussen, Melissa A. Basford, Omri Gottesman, Peggy L. Peissig, Jennifer A. Pacheco, Gerard Tromp, Jyotishman Pathak, David S. Carrell, Stephen B. Ellis, Todd Lingren, William K. Thompson, Guergana Savova, Jonathan L. Haines, Dan M. Roden, Paul A. Harris, Joshua C. Denny
2016 J jnl
Practical considerations for implementing genomic information resources.
Appl. Clin. Inform.
Casey L. Overby, John J. Connolly, Christopher G. Chute, Joshua C. Denny, Robert R. Freimuth, Andrea L. Hartzler, Ingrid A. Holm, Shannon F. Manzi, Jyotishman Pathak, Peggy L. Peissig, Maureen E. Smith, Marc S. Williams, Brian H. Shirts, Elena M. Stoffel, Peter Tarczy-Hornoch, Carolyn Rohrer Vitek, Wendy A. Wolf, Justin Starren, Luke V. Rasmussen
2016 Misc conf
Predicting Prolonged Stay in the ICU Attributable to Bleeding in Patients Offered Plasma Transfusion.
AMIA
Che Ngufor, Dennis Murphree, Sudhindra Upadhyaya, Nageswar Madde, Jyotishman Pathak, Rickey E. Carter, Daryl J. Kor
2016 Misc conf
Standardized Representation of Clinical Study Data Dictionaries with CIMI Archetypes.
AMIA
Deepak K. Sharma, Harold R. Solbrig, Eric Prud'hommeaux, Jyotishman Pathak, Guoqian Jiang
2015 Misc conf
(Authoring) Rules, (Distributed Query) Tools, and Drools: The challenging new world of high throughput phenotyping.
AMIA
Jennifer A. Pacheco, Abel N. Kho, Jyotishman Pathak, Joshua C. Denny, Shawn N. Murphy
2015 — conf
A Clinical Decision Support System for Preventing Adverse Reactions to Blood Transfusion.
ICHI
Dennis H. Murphree, Leanne Clifford, Yaxiong Lin, Nagesh Madde, Che Ngufor, Sudhindra Upadhyaya, Jyotishman Pathak, Daryl J. Kor
2015 Misc conf
A Genome- and Phenome- Wide Study of Diverticulosis.
AMIA
Yoonjung Y. Joo, Jennifer A. Pacheco, Loren L. Armstrong, William K. Thompson, Robert J. Carroll, Joshua C. Denny, Peggy L. Peissig, James G. Linneman, Jyotishman Pathak, Girish N. Nadkarni, Laura Rasmussen-Torvik, M. Geoffrey Hayes, Abel N. Kho
2015 B conf
A Heterogeneous Multi-Task Learning for Predicting RBC Transfusion and Perioperative Outcomes.
AIME
Che Ngufor, Sudhindra Upadhyaya, Dennis Murphree, Nageswar Madde, Daryl J. Kor, Jyotishman Pathak
2015 — conf
A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL.
MedInfo
Na Hong, Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute
2015 — conf
A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution.
MedInfo
Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak
2015 — conf
A Systematic Prediction of Adverse Drug Reactions Using Pre-clinical Drug Characteristics and Spontaneous Reports.
ICHI
Che Ngufor, Janusz Wojtusiak, Jyotishman Pathak
2015 — conf
Clinical Decision Support to Implement CYP2D6 Drug-Gene Interaction.
MedInfo
Pedro J. Caraballo, Mark A. Parkulo, David Blair, Michelle Elliott, Cloann Schultz, Joseph Sutton, Padma S. Rao, Jamie Bruflat, Robert R. Bleimeyer, John Crooks, Donald B. Gabrielson, Wayne T. Nicholson, Carolyn Rohrer Vitek, Kelly Wix, Suzette J. Bielinski, Jyotishman Pathak, Iftikhar J. Kullo
2015 J jnl
Desiderata for computable representations of electronic health records-driven phenotype algorithms.
J. Am. Medical Informatics Assoc.
Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris
2015 Misc conf
Developing Intermediary Medication Phenotypes via Metabolomics Biotechnology Using an Electronic Health Record-Linked Biobank.
AMIA
Matthew K. Breitenstein, Richard M. Weinshilboum, Jyotishman Pathak, Liewei Wang
2015 — conf
Developing a Modular Architecture for Creation of Rule-based Clinical Diagnostic Criteria.
BDM2I@ISWC
Na Hong, Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute
2015 — conf
Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model.
MedInfo
Guoqian Jiang, Harold R. Solbrig, Jyotishman Pathak, Christopher G. Chute
2015 — conf
Effects of Plasma Transfusion on Perioperative Bleeding Complications: A Machine Learning Approach.
MedInfo
Che Ngufor, Dennis Murphree, Sudhindra Upadhyaya, Nageswar Madde, Daryl J. Kor, Jyotishman Pathak
2015 — conf
Ensemble learning approaches to predicting complications of blood transfusion.
EMBC
Dennis Murphree, Che Ngufor, Sudhindra Upadhyaya, Nageswar Madde, Leanne Clifford, Daryl J. Kor, Jyotishman Pathak
2015 Misc conf
Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study.
AMIA
Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Jennifer A. Pacheco, Enid N. H. Montague, Jie Xu, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak
2015 B conf
Multi-task learning with selective cross-task transfer for predicting bleeding and other important patient outcomes.
DSAA
Che Ngufor, Sudhindra Upadhyaya, Dennis Murphree, Daryl J. Kor, Jyotishman Pathak
2015 Misc conf
PhEMA: Phenotype Modeling, Sharing and Execution Architecture.
AMIA
Jyotishman Pathak, Joshua C. Denny, William K. Thompson, Luke V. Rasmussen
2015 — conf
Predicting Adverse Reactions to Blood Transfusion.
ICHI
Dennis H. Murphree, Leanne Clifford, Yaxiong Lin, Nagesh Madde, Che Ngufor, Sudhindra Upadhyaya, Jyotishman Pathak, Daryl J. Kor
2015 J jnl
Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research.
J. Am. Medical Informatics Assoc.
Jie Xu, Luke V. Rasmussen, Pamela L. Shaw, Guoqian Jiang, Richard C. Kiefer, Huan Mo, Jennifer A. Pacheco, Peter Speltz, Qian Zhu, Joshua C. Denny, Jyotishman Pathak, William K. Thompson, Enid N. H. Montague
2015 Misc conf
Translating Electronic Clinical Quality Measures to Executable, Portable, and Customizable Workflows in KNIME.
AMIA
Huan Mo, Jennifer A. Pacheco, Richard C. Kiefer, Luke V. Rasmussen, Jyotishman Pathak, Joshua C. Denny, William K. Thompson
2015 Misc conf
Usability of a phenotype builder prototype and lessons learned for the design of phenotyping tools.
AMIA
Enid N. H. Montague, Jie Xu, Luke V. Rasmussen, Joshua C. Denny, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Peter Speltz, William K. Thompson, Jyotishman Pathak
2015 — conf
Using EHR-Linked Biobank Data to Study Metformin Pharmacogenomics.
MIE
Matthew K. Breitenstein, György J. Simon, Euijung Ryu, Sebastian M. Armasu, Richard M. Weinshilboum, Liewei Wang, Jyotishman Pathak
2015 — conf
Using EHRs and Machine Learning for Heart Failure Survival Analysis.
MedInfo
Maryam Panahiazar, Vahid Taslimitehrani, Naveen Pereira, Jyotishman Pathak
2015 — conf
Using EHRs for Heart Failure Therapy Recommendation Using Multidimensional Patient Similarity Analytics.
MIE
Maryam Panahiazar, Vahid Taslimitehrani, Naveen L. Pereira, Jyotishman Pathak
2014 Misc conf
An Analysis of Mayo Clinic Search Query Logs for Cardiovascular Diseases.
AMIA
Ashutosh Jadhav, Amit P. Sheth, Jyotishman Pathak
2014 Misc conf
Analysis of Online Information Searching for Cardiovascular Diseases on a Consumer Health Information Portal.
AMIA
Ashutosh Jadhav, Amit P. Sheth, Jyotishman Pathak
2014 — conf
Clinical Decision Making: A Framework for Predicting Rx Response.
ICDM Workshops
Aarti Sathyanarayana, Jyotishman Pathak, Rozalina G. McCoy, Santiago Romero-Brufau, Maryam Panaziahar, Jaideep Srivastava
2014 J jnl
Design patterns for the development of electronic health record-driven phenotype extraction algorithms.
J. Biomed. Informatics
Luke V. Rasmussen, William K. Thompson, Jennifer A. Pacheco, Abel N. Kho, David Carrell, Jyotishman Pathak, Peggy L. Peissig, Gerard Tromp, Joshua C. Denny, Justin B. Starren
2014 — conf
Empowering personalized medicine with big data and semantic web technology: Promises, challenges, and use cases.
IEEE BigData
Maryam Panahiazar, Vahid Taslimi, Ashutosh Jadhav, Jyotishman Pathak
2014 Misc conf
Evaluation of Existing Phenotype Authoring Tools for Clinical Research.
AMIA
Luke V. Rasmussen, Jie Xu, Ruijue Liu, Qian Zhu, Jennifer A. Pacheco, Jyotishman Pathak, William K. Thompson, Joshua C. Denny, Huan Mo, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague
2014 — conf
Online Information Seeking for Cardiovascular Diseases: A Case Study from Mayo Clinic.
MIE
Ashutosh Jadhav, Stephen T. Wu, Amit P. Sheth, Jyotishman Pathak
2014 Misc conf
Qualitative evaluation of three phenotype information models to find methotrexate liver injury.
AMIA
Qian Zhu, Huan Mo, Luke V. Rasmussen, Andrew R. Post, Jennifer A. Pacheco, Jie Xu, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Jyotishman Pathak
2014 J jnl
Research and applications: An electronic health record driven algorithm to identify incident antidepressant medication users.
J. Am. Medical Informatics Assoc.
William V. Bobo, Jyotishman Pathak, Hilal Maradit Kremers, Barbara P. Yawn, Scott M. Brue, Cynthia J. Stoppel, Paul E. Croarkin, Jennifer St Sauver, Mark A. Frye, Walter A. Rocca
2014 Misc conf
Scalable and High-Throughput Execution of Clinical Quality Measures from Electronic Health Records using MapReduce and the JBoss(R) Drools Engine.
AMIA
Kevin J. Peterson, Jyotishman Pathak
2014 Misc conf
Using PhenotypePortal for Checking Clinical Guideline Recommendation Compliance.
AMIA
Lara Johnstun, Danielle Groat, Amol Bhalla, Kevin J. Peterson, Jyotishman Pathak, Adela Grando
2014 — conf
Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data.
BHI
Feichen Shen, Dingcheng Li, Hongfang Liu, Yugyung Lee, Jyotishman Pathak, Christopher G. Chute, Cui Tao
2014 — conf
What Information about Cardiovascular Diseases do People Search Online?
MIE
Ashutosh Jadhav, Stephen T. Wu, Amit P. Sheth, Jyotishman Pathak
2013 J jnl
A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data.
J. Am. Medical Informatics Assoc.
Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute
2013 J jnl
Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL.
J. Biomed. Informatics
Qian Zhu, Robert R. Freimuth, Jyotishman Pathak, Matthew J. Durski, Christopher G. Chute
2013 J jnl
Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study.
J. Biomed. Informatics
Qian Zhu, Robert R. Freimuth, Zonghui Lian, Scott Bauer, Jyotishman Pathak, Cui Tao, Matthew J. Durski, Christopher G. Chute
2013 — conf
Mining Anti-coagulant Drug-Drug Interactions from Electronic Health Records Using Linked Data.
DILS
Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2013 Misc conf
Mining Drug-Drug Interaction Patterns from Linked Clinical Data.
AMIA
Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2013 — conf
Mining drug-drug interaction patterns from linked data: A case study for Warfarin, Clopidogrel, and Simvastatin.
BIBM
Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2013 Misc conf
PhenotypePortal: An Open-Source Library and Platform for Authoring, Executing and Visualization of Electronic Health Records Driven Phenotyping Algorithms.
AMIA
Jyotishman Pathak, Cory M. Endle, Dale Suesse, Kevin J. Peterson, Craig Stancl, Dingcheng Li, Christopher G. Chute
2013 — conf
Phenotyping on EHR Data Using OWL and Semantic Web Technologies.
ICSH
Cui Tao, Dingcheng Li, Feichen Shen, Zonghui Lian, Jyotishman Pathak, Hongfang Liu, Christopher G. Chute
2013 J jnl
Terminology representation guidelines for biomedical ontologies in the semantic web notations.
J. Biomed. Informatics
Cui Tao, Jyotishman Pathak, Harold R. Solbrig, Wei-Qi Wei, Christopher G. Chute
2013 — conf
Using Linked Data for Mining Drug-Drug Interactions in Electronic Health Records.
MedInfo
Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2013 Misc conf
Using standardized clinical data modeling and knowledge representation to compute pharmacogenomic data elements.
AMIA
Qian Zhu, Jyotishman Pathak, Robert R. Freimuth, Christopher G. Chute
2012 Misc conf
A Distributed Semantic Web Approach for Cohort Identification.
AMIA
Joseph Teagno, Richard C. Kiefer, Jyotishman Pathak, G. Q. Zhang, Satya Sanket Sahoo
2012 — conf
A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data.
HISB
Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute
2012 Misc conf
An Evaluation of the NQF Quality Data Model for Representing Electronic Health Record Driven Phenotyping Algorithms.
AMIA
William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Peggy L. Peissig, Joshua C. Denny, Abel N. Kho, Aaron W. Miller, Jyotishman Pathak
2012 — conf
Applying linked data principles to represent patient's electronic health records at Mayo clinic: a case report.
IHI
Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2012 J jnl
Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank.
J. Biomed. Semant.
Jyotishman Pathak, Richard C. Kiefer, Suzette J. Bielinski, Christopher G. Chute
2012 J jnl
Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project.
J. Biomed. Informatics
Susan Rea, Jyotishman Pathak, Guergana K. Savova, Thomas A. Oniki, Les Westberg, Calvin E. Beebe, Cui Tao, Craig G. Parker, Peter J. Haug, Stanley M. Huff, Christopher G. Chute
2012 J jnl
Importance of multi-modal approaches to effectively identify cataract cases from electronic health records.
J. Am. Medical Informatics Assoc.
Peggy L. Peissig, Luke V. Rasmussen, Richard L. Berg, James G. Linneman, Catherine A. McCarty, Carol Waudby, Lin Chen, Joshua C. Denny, Russell A. Wilke, Jyotishman Pathak, David Carrell, Abel N. Kho, Justin B. Starren
2012 Misc conf
Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary Results.
Pacific Symposium on Biocomputing
Jyotishman Pathak, Laura C. Weiss, Matthew J. Durski, Qian Zhu, Robert R. Freimuth, Christopher G. Chute
2012 Misc conf
Mining Genotype-Phenotype Associations from Electronic Health Records and Biorepositories using Semantic Web Technologies.
AMIA
Jyotishman Pathak, Richard C. Kiefer, Robert R. Freimuth, Suzette J. Bielinski, Christopher G. Chute
2012 Misc conf
Mining the Human Phenome using Semantic Web Technologies: A Case Study for Type 2 Diabetes.
AMIA
Jyotishman Pathak, Richard C. Kiefer, Suzette J. Bielinski, Christopher G. Chute
2012 Misc conf
Modeling and Executing Electronic Health Records Driven Phenotyping Algorithms using the NQF Quality Data Model and JBoss® Drools Engine.
AMIA
Dingcheng Li, Sahana Murthy, Davide Sottara, Christopher G. Chute, Stanley M. Huff, Jyotishman Pathak, Cory M. Endle, Dale Suesse, Craig Stancle
2012 — ed.
Proceedings of the Joint Workshop on Semantic Technologies Applied to Biomedical Informatics and Individualized Medicine, Boston, USA, November 12, 2012
SATBI+SWIM
Alejandro Rodríguez González, Jyotishman Pathak, Mark D. Wilkinson, Nigam Shah, Robert Stevens, Richard D. Boyce, Ángel García-Crespo
2012 — conf
Requirements and Strategy for the Development of a Pediatric Drug Ontology.
ICBO
Rachel L. Richesson, Jyotishman Pathak, Wendy McLeod, Ginger Blackmon, Kendra Vehik
2012 Misc conf
Using Electronic Health Records to Identify Heart Failure Cohorts with Differentiation for Preserved and Reduced Ejection Fraction.
AMIA
Suzette J. Bielinski, Jyotishman Pathak, Hongfang Liu, Sunghwan Sohn, Gail P. Jarvik, David Carrell, Naveen Pereira, Véronique L. Roger
2012 Misc conf
Using Electronic Health Records to Identify Patient Cohorts for Drug-Induced Thrombocytopenia, Neutropenia and Liver Injury.
AMIA
Jyotishman Pathak, Aref Al-Kali, Jayant Talwalkar, Abel N. Kho, Joshua C. Denny, Sean P. Murphy, Kevin Bruce, Matthew J. Durski, Christopher G. Chute
2012 Misc conf
Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network.
AMIA
Robert J. Carroll, Katherine P. Liao, Anne E. Eyler, Lisa Bastarache, Dana C. Crawford, Peggy L. Peissig, Jyotishman Pathak, David Carrell, Abel N. Kho, Rongling Li, Daniel R. Masys, Gail P. Jarvik, Christopher G. Chute, Rex L. Chisholm, Eric B. Larson, Catherine A. McCarty, Iftikhar J. Kullo
2012 Misc conf
Visualization and Reporting of Results for Electronic Health Records Driven Phenotyping using the Open-Source popHealth Platform.
AMIA
Cory M. Endle, Sahana Murthy, Dale Suesse, Craig Stancle, Dingcheng Li, Lacey Hart, Christopher G. Chute, Jyotishman Pathak
2011 — conf
An Ontological Representation of Adverse Drug Events.
ICBO
Guoqian Jiang, Jon D. Duke, Jyotishman Pathak, Christopher G. Chute
2011 J jnl
Letter: Further revamping VA's NDF-RT drug terminology for clinical research.
J. Am. Medical Informatics Assoc.
Jyotishman Pathak, Christopher G. Chute
2011 J jnl
Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience.
J. Am. Medical Informatics Assoc.
Jyotishman Pathak, Janey Wang, Sudha Kashyap, Melissa A. Basford, Rongling Li, Daniel R. Masys, Christopher G. Chute
2011 — conf
The linked clinical data project: applying semantic web technologies for clinical and translational research using electronic medical records.
SWAT4LS
Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2011 — conf
Using RxNorm to Extract Medication Data from Electronic Health Records in the Rochester Epidemiology Project.
ICBO
Jyotishman Pathak, Shawn P. Murphy, Brian N. Willaert, Hilal M. Kremers, Christopher G. Chute, Barbara P. Yawn, Walter A. Rocca
2010 J jnl
Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT.
J. Am. Medical Informatics Assoc.
Jyotishman Pathak, Christopher G. Chute
2010 J jnl
Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG.
J. Am. Medical Informatics Assoc.
Jyotishman Pathak, Lee B. Peters, Christopher G. Chute, Olivier Bodenreider
2010 J jnl
Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease.
J. Am. Medical Informatics Assoc.
Iftikhar J. Kullo, Jin Fan, Jyotishman Pathak, Guergana K. Savova, Zeenat Ali, Christopher G. Chute
2009 J jnl
Formalizing ICD coding rules using Formal Concept Analysis.
J. Biomed. Informatics
Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute
2009 J jnl
Implementation Brief: LexGrid: A Framework for Representing, Storing, and Querying Biomedical Terminologies from Simple to Sublime.
J. Am. Medical Informatics Assoc.
Jyotishman Pathak, Harold R. Solbrig, James D. Buntrock, Thomas M. Johnson, Christopher G. Chute
2009 J jnl
Survey of modular ontology techniques and their applications in the biomedical domain.
Integr. Comput. Aided Eng.
Jyotishman Pathak, Thomas M. Johnson, Christopher G. Chute
2008 — conf
Adopting Graph Traversal Techniques for Context-Driven Value Sets Extraction from Biomedical Knowledge Sources.
ICSC
Jyotishman Pathak, Guoqian Jiang, Sridhar O. Dwarkanath, James D. Buntrock, Christopher G. Chute
2008 — conf
Composing Web Services through Automatic Reformulation of Service Specifications.
IEEE SCC (1)
Jyotishman Pathak, Samik Basu, Vasant G. Honavar
2008 — conf
LexSearch: An Approach for Leveraging Semantic Annotations to Searching Ontologies.
AAAI Spring Symposium: Semantic Scientific Knowledge Integration
Jyotishman Pathak, James D. Buntrock, Christopher G. Chute
2008 Misc conf
LexValueSets: An Approach for Context-Driven Value Sets Extraction.
AMIA
Jyotishman Pathak, Guoqian Jiang, Sridhar O. Dwarkanath, James D. Buntrock, Christopher G. Chute
2008 J jnl
MOSCOE: an Approach for Composing Web Services through Iterative Reformulation of Functional Specifications.
Int. J. Artif. Intell. Tools
Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant G. Honavar
2008 Misc conf
Modular ontology techniques and their applications in the biomedical domain.
IRI
Jyotishman Pathak, Thomas M. Johnson, Christopher G. Chute
2007 — ch.
Assembling Composite Web Services from Autonomous Components.
Emerging Artificial Intelligence Applications in Computer Engineering
Jyotishman Pathak, Samik Basu, Vasant G. Honavar
2007 — conf
Business-Activity Driven Search: Addressing the Information Needs of Services Professionals.
IEEE SCC
Nithya Rajamani, Murthy V. Devarakonda, Yu Deng, Wlodek Zadrozny, Jyotishman Pathak
2007 Misc conf
Integrated Decision Algorithms for Auto-steered Electric Transmission System Asset Management.
International Conference on Computational Science (1)
James D. McCalley, Vasant G. Honavar, Sarah M. Ryan, William Q. Meeker, Daji Qiao, Ronald A. Roberts, Yuan Li, Jyotishman Pathak, Mujing Ye, Yili Hong
2007 A conf
On Context-Specific Substitutability of Web Services.
ICWS
Jyotishman Pathak, Samik Basu, Vasant G. Honavar
2006 — conf
A Service-Oriented Architecture for Electric Power Transmission System Asset Management.
ICSOC Workshops
Jyotishman Pathak, Yuan Li, Vasant G. Honavar, James D. McCalley
2006 — conf
Condition Data Aggregation with Application to Failure Rate Calculation of Power Transformers.
HICSS
Jyotishman Pathak, Yong Jiang, Vasant G. Honavar, James D. McCalley
2006 B conf
Learning Classifiers from Distributed, Ontology-Extended Data Sources.
DaWaK
Doina Caragea, Jun Zhang, Jyotishman Pathak, Vasant G. Honavar
2006 — conf
MoSCoE: A Framework for Modeling Web Service Composition and Execution.
ICDE Workshops
Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant G. Honavar
2006 A conf
Modeling Web Services by Iterative Reformulation of Functional and Non-functional Requirements.
ICSOC
Jyotishman Pathak, Samik Basu, Vasant G. Honavar
2006 — conf
Parallel Web Service Composition in MoSCoE: A Choreography-Based Approach.
ECOWS
Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant G. Honavar
2006 B conf
Selecting and Composing Web Services through Iterative Reformulation of Functional Specifications.
ICTAI
Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant G. Honavar
2005 — conf
A framework for semantic web services discovery.
WIDM
Jyotishman Pathak, Neeraj Koul, Doina Caragea, Vasant G. Honavar
2005 B conf
Algorithms and Software for Collaborative Discovery from Autonomous, Semantically Heterogeneous, Distributed Information Sources.
ALT
Doina Caragea, Jun Zhang, Jie Bao, Jyotishman Pathak, Vasant G. Honavar
2005 B conf
Algorithms and Software for Collaborative Discovery from Autonomous, Semantically Heterogeneous, Distributed Information Sources.
Discovery Science
Doina Caragea, Jun Zhang, Jie Bao, Jyotishman Pathak, Vasant G. Honavar
2005 — conf
Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources.
DILS
Doina Caragea, Jyotishman Pathak, Jie Bao, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant G. Honavar
2005 — conf
Information Integration from Semantically Heterogeneous Biological Data Sources.
DEXA Workshops
Doina Caragea, Jie Bao, Jyotishman Pathak, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant G. Honavar
2004 — conf
Learning Classifiers from Semantically Heterogeneous Data.
CoopIS/DOA/ODBASE (2)
Doina Caragea, Jyotishman Pathak, Vasant G. Honavar
2004 — conf
Ontology-Extended Component-Based Workflows : A Framework for Constructing Complex Workflows from Semantically Heterogeneous Software Components.
SWDB
Jyotishman Pathak, Doina Caragea, Vasant G. Honavar
2003 Misc conf
Information Extraction and Integration from Heterogeneous, Distributed, Autonomous Information Sources : A Federated Ontology-Driven Query-Centric Approach.
IRI
Jaime Reinoso, Adrian Silvescu, Doina Caragea, Jyotishman Pathak, Vasant G. Honavar