Justin Chu

20 papers C 1Journal 17Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
Effective fault localization and context-aware debugging for concurrent programs.
Softw. Test. Verification Reliab.
Justin Chu, Tingting Yu, Jane Huffman Hayes, Xue Han, Yu Zhao
2022 J jnl
RResolver: efficient short-read repeat resolution within ABySS.
BMC Bioinform.
Vladimir Nikolic, Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip, René L. Warren, Inanç Birol
2022 J jnl
btllib: A C++ library with Python interface for efficient genomic sequence processing.
J. Open Source Softw.
Vladimir Nikolic, Parham Kazemi, Lauren Coombe, Johnathan Wong, Amirhossein Afshinfard, Justin Chu, René L. Warren, Inanç Birol
2021 J jnl
90% Accuracy for Photoplethysmography-Based Non-Invasive Blood Glucose Prediction by Deep Learning with Cohort Arrangement and Quarterly Measured HbA1c.
Sensors
Justin Chu, Wen-Tse Yang, Wei-Ru Lu, Yao-Ting Chang, Tung-Han Hsieh, Fu-Liang Yang
2021 J jnl
GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies.
IEEE ACM Trans. Comput. Biol. Bioinform.
Eric Chen, Justin Chu, Jessica Zhang, René L. Warren, Inanç Birol
2021 J jnl
GapPredict: A Language Model for Resolving Gaps in Draft Genome Assemblies.
CoRR
Eric Chen, Justin Chu, Jessica Zhang, René L. Warren, Inanç Birol
2020 J jnl
Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters.
Proc. Natl. Acad. Sci. USA
Justin Chu, Hamid Mohamadi, Emre Erhan, Jeffery Tse, Readman Chiu, Sarah Yeo, Inanç Birol
2020 J jnl
ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs.
Bioinform.
Lauren Coombe, Vladimir Nikolic, Justin Chu, Inanç Birol, René L. Warren
2018 J jnl
ARCS: scaffolding genome drafts with linked reads.
Bioinform.
Sarah Yeo, Lauren Coombe, René L. Warren, Justin Chu, Inanç Birol
2018 J jnl
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
BMC Bioinform.
Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanç Birol, René L. Warren
2018 J jnl
ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.
Bioinform.
Hamza Khan, Hamid Mohamadi, Benjamin P. Vandervalk, René L. Warren, Justin Chu, Inanç Birol
2018 J jnl
Tigmint: correcting assembly errors using linked reads from large molecules.
BMC Bioinform.
Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol
2018 C conf
ntPack: A Software Package for Big Data in Genomics.
BDCAT
Inanç Birol, Hamid Mohamadi, Justin Chu
2017 J jnl
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art.
Bioinform.
Justin Chu, Hamid Mohamadi, René L. Warren, Chen Yang, Inanç Birol
2017 J jnl
Kollector: transcript-informed, targeted de novo assembly of gene loci.
Bioinform.
Erdi Kucuk, Justin Chu, Benjamin P. Vandervalk, S. Austin Hammond, René L. Warren, Inanç Birol
2017 J jnl
Kollector: transcript-informed, targeted de novo assembly of gene loci.
Bioinform.
Erdi Kucuk, Justin Chu, Benjamin P. Vandervalk, S. Austin Hammond, René L. Warren, Inanç Birol
2016 J jnl
ntHash: recursive nucleotide hashing.
Bioinform.
Hamid Mohamadi, Justin Chu, Benjamin P. Vandervalk, Inanç Birol
2014 J jnl
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.
Bioinform.
Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S. N. Butterfield, A. Gordon Robertson, Inanç Birol
2014 — conf
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph.
BIBM
Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol
2014 — conf
Spaced seed data structures.
BIBM
Inanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren