Junyi Li

38 papers Journal 27Unranked 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
CGNNStealer: Cooperative data-free model extraction attack on graph neural networks.
Comput. Stand. Interfaces
Yulin Wu, Zelin Li, Aiwei Liu, Xiaozhen Sun, Yuxin Wang, Junyi Li, Xuan Wang
2025 — conf
E-MSNGO: Explainable Multi-species Protein Function Prediction Model Based on Aggregated Networks.
ICIC (26)
Beibei Wang, Siyuan Zhou, Shiqu Chen, Junyi Li
2025 — conf
MKDTI: Predicting Drug-Target Interactions via Multiple Kernel Fusion on Graph Attention Network.
ICIC (25)
Yuhuan Zhou, Yaqiu Wang, Yulin Wu, Qian Chen, Weiwei Yuan, Xuan Wang, Junyi Li
2025 J jnl
MSNGO: multi-species protein function annotation based on 3D protein structure and network propagation.
Bioinform.
Beibei Wang, Boyue Cui, Shiqu Chen, Xuan Wang, Yadong Wang, Junyi Li
2025 J jnl
MSNGO: multi-species protein function annotation based on 3D protein structure and network propagation.
CoRR
Beibei Wang, Boyue Cui, Shiqu Chen, Xuan Wang, Yadong Wang, Junyi Li
2024 J jnl
DIRMC: a database of immunotherapy-related molecular characteristics.
Database J. Biol. Databases Curation
Yue Liu, Yuhuan Zhou, Xiumei Hu, Wuri Le-Ge, Haoyan Wang, Tao Jiang, Junyi Li, Yang Hu, Yadong Wang
2024 J jnl
MCDHGN: heterogeneous network-based cancer driver gene prediction and interpretability analysis.
Bioinform.
Lexiang Wang, Jingli Zhou, Xuan Wang, Yadong Wang, Junyi Li
2024 J jnl
MKDTI: Predicting drug-target interactions via multiple kernel fusion on graph attention network.
CoRR
Yuhuan Zhou, Yulin Wu, Weiwei Yuan, Xuan Wang, Junyi Li
2024 — conf
PF2PI: Protein Function Prediction Based on AlphaFold2 Information and Protein-Protein Interaction.
ICIC (LNBI 2)
Ruiqi Li, Peishun Jiao, Junyi Li
2024 — conf
SLGNNCT: Synthetic Lethality Prediction Based on Knowledge Graph for Different Cancers Types.
ICIC (LNBI 1)
Jingru Chen, Jianyong Pan, Yan Zhu, Junyi Li
2024 J jnl
circ2DGNN: circRNA-Disease Association Prediction via Transformer-Based Graph Neural Network.
IEEE ACM Trans. Comput. Biol. Bioinform.
Keliang Cen, Zheming Xing, Xuan Wang, Yadong Wang, Junyi Li
2023 J jnl
HNetGO: protein function prediction via heterogeneous network transformer.
Briefings Bioinform.
Xiaoshuai Zhang, Huannan Guo, Fan Zhang, Xuan Wang, Kaitao Wu, Shizheng Qiu, Bo Liu, Yadong Wang, Yang Hu, Junyi Li
2023 — conf
NIEE: Modeling Edge Embeddings for Drug-Disease Association Prediction via Neighborhood Interactions.
ICIC (3)
Yu Jiang, Jingli Zhou, Yong Zhang, Yulin Wu, Xuan Wang, Junyi Li
2023 J jnl
PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kaitao Wu, Lexiang Wang, Bo Liu, Yang Liu, Yadong Wang, Junyi Li
2023 J jnl
Prot2GO: Predicting GO Annotations From Protein Sequences and Interactions.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaoshuai Zhang, Lixin Wang, Hucheng Liu, Xiaofeng Zhang, Bo Liu, Yadong Wang, Junyi Li
2023 J jnl
SLGNN: synthetic lethality prediction in human cancers based on factor-aware knowledge graph neural network.
Bioinform.
Yan Zhu, Yuhuan Zhou, Yang Liu, Xuan Wang, Junyi Li
2023 J jnl
ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive Learning.
IEEE ACM Trans. Comput. Biol. Bioinform.
Linlin Du, Rui Han, Bo Liu, Yadong Wang, Junyi Li
2023 J jnl
Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information.
Bioinform.
Peishun Jiao, Beibei Wang, Xuan Wang, Bo Liu, Yadong Wang, Junyi Li
2022 J jnl
Deepgmd: A Graph-Neural-Network-Based Method to Detect Gene Regulator Module.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiao Ye, Yulin Wu, Jiangsheng Pi, Hong Li, Bo Liu, Yadong Wang, Junyi Li
2022 J jnl
Mixed-protocol multi-party computation framework towards complex computation tasks with malicious security.
Comput. Stand. Interfaces
Yulin Wu, Xuan Wang, Willy Susilo, Guomin Yang, Zoe Lin Jiang, Junyi Li, Xueqiao Liu
2022 — conf
NSAP: A Neighborhood Subgraph Aggregation Method for Drug-Disease Association Prediction.
ICIC (2)
Qiqi Jiao, Yu Jiang, Yang Zhang, Yadong Wang, Junyi Li
2022 J jnl
OTUCD: Unsupervised GCN based metagenomics non-overlapping community detection.
Comput. Biol. Chem.
Zhongqing Zhang, Qiqi Jiao, Yang Zhang, Bo Liu, Yadong Wang, Junyi Li
2022 J jnl
Prediction of the disease causal genes based on heterogeneous network and multi-feature combination method.
Comput. Biol. Chem.
Lexiang Wang, Mingxiao Wu, Yulin Wu, Xiaofeng Zhang, Sen Li, Ming He, Fan Zhang, Yadong Wang, Junyi Li
2021 J jnl
Factor graph-aggregated heterogeneous network embedding for disease-gene association prediction.
BMC Bioinform.
Ming He, Chen Huang, Bo Liu, Yadong Wang, Junyi Li
2021 J jnl
IIMLP: integrated information-entropy-based method for LncRNA prediction.
BMC Bioinform.
Junyi Li, Huinian Li, Xiao Ye, Li Zhang, Qingzhe Xu, Yuan Ping, Xiaozhu Jing, Wei Jiang, Qing Liao, Bo Liu, Yadong Wang
2021 J jnl
ScGSLC: An unsupervised graph similarity learning framework for single-cell RNA-seq data clustering.
Comput. Biol. Chem.
Junyi Li, Wei Jiang, Henry Han, Jing Liu, Bo Liu, Yadong Wang
2021 — conf
ScSSC: Semi-supervised Single Cell Clustering Based on 2D Embedding.
ICIC (3)
Naile Shi, Yulin Wu, Linlin Du, Bo Liu, Yadong Wang, Junyi Li
2021 J jnl
deGSM: Memory Scalable Construction Of Large Scale de Bruijn Graph.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hongzhe Guo, Yilei Fu, Yan Gao, Junyi Li, Yadong Wang, Bo Liu
2020 — conf
GONET: A Deep Network to Annotate Proteins via Recurrent Convolution Networks.
BIBM
Junyi Li, Lixin Wang, Xiaoshuai Zhang, Bo Liu, Yadong Wang
2020 — conf
HGAlinker: Drug-Disease Association Prediction Based on Attention Mechanism of Heterogeneous Graph.
ICIC (2)
Xiaozhu Jing, Wei Jiang, Zhongqing Zhang, Yadong Wang, Junyi Li
2020 J jnl
Prognostic prediction of carcinoma by a differential-regulatory-network-embedded deep neural network.
Comput. Biol. Chem.
Junyi Li, Yuan Ping, Hong Li, Huinian Li, Ying Liu, Bo Liu, Yadong Wang
2019 J jnl
Integrated entropy-based approach for analyzing exons and introns in DNA sequences.
BMC Bioinform.
Junyi Li, Li Zhang, Huinian Li, Yuan Ping, Qingzhe Xu, Rongjie Wang, Renjie Tan, Zhen Wang, Bo Liu, Yadong Wang
2019 — conf
Prediction of Human LncRNAs Based on Integrated Information Entropy Features.
ICIC (2)
Junyi Li, Huinian Li, Li Zhang, Qingzhe Xu, Yuan Ping, Xiaozhu Jing, Wei Jiang, Bo Liu, Yadong Wang
2019 J jnl
rMETL: sensitive mobile element insertion detection with long read realignment.
Bioinform.
Tao Jiang, Bo Liu, Junyi Li, Yadong Wang
2018 — conf
DeepDNA: a hybrid convolutional and recurrent neural network for compressing human mitochondrial genomes.
BIBM
Rongjie Wang, Yang Bai, Yan-Shuo Chu, Zhenxing Wang, Yongtian Wang, Mingrui Sun, Junyi Li, Tianyi Zang, Yadong Wang
2017 J jnl
Differential regulation analysis reveals dysfunctional regulatory mechanism involving transcription factors and microRNAs in gastric carcinogenesis.
Artif. Intell. Medicine
Quanxue Li, Junyi Li, Wentao Dai, Yi-Xue Li, Yuan-Yuan Li
2017 J jnl
rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering.
Bioinform.
Bo Liu, Tao Jiang, Siu-Ming Yiu, Junyi Li, Yadong Wang
2016 J jnl
A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes.
BMC Syst. Biol.
Su-Juan Wu, Junyi Li, Mushui Cao, Jing Yang, Yi-Xue Li, Yuan-Yuan Li