Junlin Xu

53 papers A* 2Journal 46Unranked 5
YearRankTypeTitle / Venue / Authors
2026 J jnl
A deep adversarial network model for multi-task analysis of single-cell omics data.
Briefings Bioinform.
Junlin Xu, Cheng Guo, Yajie Meng, Shuting Jin, Changcheng Lu, Zilong Zhang, Feifei Cui, Xiangzheng Fu, Quan Zou, Tian Tian, Xiangxiang Zeng
2026 J jnl
CNNCaps-DBP: Leveraging protein language models with attention-augmented convolution for DNA-binding protein prediction.
Neural Networks
Ziyuan Yan, Aoyun Geng, Yazi Li, Jiajing Wang, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Zilong Zhang, Feifei Cui
2026 J jnl
DeepNhKcr: Explainable Deep Learning Framework for the Prediction of Crotonylation Sites of Non-Histone Lysine in Plants Based on Pre-Trained Protein Language Model.
IEEE Trans. Comput. Biol. Bioinform.
Jinwei Wang, Zhenjie Luo, Aoyun Geng, Junlin Xu, Yajie Meng, Shankai Yan, Leyi Wei, Zilong Zhang, Qingchen Zhang, Quan Zou, Feifei Cui
2026 A* conf
EccoMamba: Enhanced Cross-hierarchical Continuity Orthogonal Mamba for Medical Image Segmentation.
AAAI
Junlin Xu, Jincan Li, Feifei Cui, Zhuang Zhang, Jialiang Yang, Shuting Jin, Qiangguo Jin, Yajie Meng
2026 A* conf
FuseMine: Robust Multi-Modal Compound-Protein Interaction Prediction via Differential Attention Feature Mining.
AAAI
Junlin Xu, Zhuang Zhang, Zhenghang Gong, Jincan Li, Pan Zeng, Zilong Zhang, Xiong Li, Shuting Jin, Haowen Chen, Yajie Meng
2026 J jnl
FusionMVSA: Multi-View Fusion Strategy With Self-Attention for Enhancing Drug Recommendation.
IEEE J. Biomed. Health Informatics
Yajie Meng, Zhuang Zhang, Xudong Shang, Xianfang Tang, Jincan Li, Zilong Zhang, Feifei Cui, Shuting Jin, Junlin Xu, Peng Wang
2026 J jnl
MFDL-DDI: An effective deep learning-based framework for predicting drug-drug interactions through multimodal information fusion.
Pattern Recognit.
Yan Xia, Yazi Li, Shuting Jin, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Xin Gao, Feifei Cui
2026 J jnl
Protein Solubility Prediction Using Fused Graph Convolutional Networks and Improved Attention Networks with AlphaFold3-Derived Features.
J. Chem. Inf. Model.
Guanjie Song, Zhenjie Luo, Aoyun Geng, Junlin Xu, Yajie Meng, Feifei Cui, Leyi Wei, Quan Zou, Zilong Zhang
2025 — conf
A Conformation Enhanced Graph Attention Framework for Predicting Synergistic Drug Combinations.
BIBM
Huaze Long, Shuting Jin, Junlin Xu, Zhiwei Xu
2025 J jnl
AVP-HNCL: Innovative Contrastive Learning with a Queue-Based Negative Sampling Strategy for Dual-Phase Antiviral Peptide Prediction.
J. Chem. Inf. Model.
Yuanhao Li, Aoyun Geng, Zheyu Zhou, Feifei Cui, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Qingchen Zhang, Zilong Zhang
2025 J jnl
AcidProNet: Acidophilic Protein Classification via DCGAN-GP-Based Data Augmentation and Parameter-Shared Mixture-of-Experts Transformer.
J. Chem. Inf. Model.
Jiaxing Song, Aoyun Geng, Qianmao Wen, Junlin Xu, Yajie Meng, Feifei Cui, Quan Zou, Leyi Wei, Zilong Zhang
2025 J jnl
Adaptive debiasing learning for drug repositioning.
J. Biomed. Informatics
Yajie Meng, Yi Wang, Xinrong Hu, Changcheng Lu, Xianfang Tang, Feifei Cui, Pan Zeng, Yuhua Yao, Jialiang Yang, Junlin Xu
2025 J jnl
Adaptive symmetry-based adversarial perturbation augmentation for molecular graph representations with dual-fusion attention information.
Inf. Fusion
Shuting Jin, Xiangrong Liu, Junlin Xu, Sisi Yuan, Hongxing Xiang, Lian Shen, Chunyan Li, Zhangming Niu, Yinhui Jiang
2025 J jnl
Automatic collaborative learning for drug repositioning.
Eng. Appl. Artif. Intell.
Yi Wang, Yajie Meng, Chang Zhou, Xianfang Tang, Pan Zeng, Chu Pan, Qiang Zhu, Bengong Zhang, Junlin Xu
2025 — conf
Bidirectional Relational Fusion with Meta-Learning for Inductive Knowledge Graph Completion.
BIBM
Yaohao Wu, Junlin Xu, Qiangguo Jin, Shuting Jin
2025 J jnl
CAMIL: channel attention-based multiple instance learning for whole slide image classification.
Bioinform.
Jinyang Mao, Junlin Xu, Xianfang Tang, Yongjin Liu, Heaven Zhao, Geng Tian, Jialiang Yang
2025 J jnl
CDPMF-DDA: contrastive deep probabilistic matrix factorization for drug-disease association prediction.
BMC Bioinform.
Xianfang Tang, Yawen Hou, Yajie Meng, Zhaojing Wang, Changcheng Lu, Juan Lv, Xinrong Hu, Junlin Xu, Jialiang Yang
2025 J jnl
Cross-Modal Interaction-Aware Progressive Fusion Network for Drug-Target Interaction Prediction.
J. Chem. Inf. Model.
Zhichong Cao, Jing Xie, Junlin Xu, Bo Li
2025 J jnl
DeepMaT: Prediction of Target Peptide Classification and Cleavage Site by Combining Mamba2 and Multiple Attention Mechanisms.
J. Chem. Inf. Model.
Qianmao Wen, Aoyun Geng, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Quan Zou, Feifei Cui
2025 J jnl
ERSR: An Ellipse-constrained pseudo-label refinement and symmetric regularization framework for semi-supervised fetal head segmentation in ultrasound images.
CoRR
Linkuan Zhou, Zhexin Chen, Yufei Shen, Junlin Xu, Ping Xuan, Yixin Zhu, Yuqi Fang, Cong Cong, Leyi Wei, Ran Su, Jia Zhou, Qiangguo Jin
2025 J jnl
Enhanced drug recommendation model with graph contrastive based on singular value decomposition.
Eng. Appl. Artif. Intell.
Pan Zeng, Ling You, Bofei Zhang, Yajie Meng, Xianfang Tang, Zilong Zhang, Feifei Cui, Jing Jiang, Junlin Xu
2025 J jnl
Enhancing Drug Repositioning Through Local Interactive Learning With Bilinear Attention Networks.
IEEE J. Biomed. Health Informatics
Xianfang Tang, Chang Zhou, Changcheng Lu, Yajie Meng, Junlin Xu, Xinrong Hu, Geng Tian, Jialiang Yang
2025 J jnl
Large Model Era: Deep Learning in Osteoporosis Drug Discovery.
J. Chem. Inf. Model.
Junlin Xu, Xiaobo Wen, Li Sun, Kunyue Xing, Linyuan Xue, Sha Zhou, Jiayi Hu, Zhijuan Ai, Qian Kong, Zishu Wen, Li Guo, Minglu Hao, Dongming Xing
2025 J jnl
ML-PLA: Enhancing Protein-Ligand Binding Affinity Prediction with Microenvironment and Long-Range Interaction-Aware Graph Neural Networks.
J. Chem. Inf. Model.
Yajie Meng, Zhuang Zhang, Jincan Li, Xianfang Tang, Changcheng Lu, Zilong Zhang, Feifei Cui, Pan Zeng, Bo Li, Junlin Xu
2025 J jnl
Multi-spatial-attention U-Net: a novel framework for automated gallbladder segmentation on CT images.
BMC Medical Imaging
Henan Lou, Xiaobo Wen, Fanxia Lin, Zhan Peng, Qiuxiao Wang, Ruimei Ren, Junlin Xu, Jinfei Fan, Hao Song, Xiaomeng Ji, Huiyu Wang, Xiangyin Sun, Yinying Dong
2025 J jnl
PLM-IL4: Enhancing IL-4-inducing peptide prediction with protein language model.
Comput. Biol. Chem.
Ruiqi Liu, Shankai Yan, Zilong Zhang, Junlin Xu, Yajie Meng, Qingchen Zhang, Leyi Wei, Quan Zou, Feifei Cui
2025 J jnl
Predicting drug-target interactions based on multivariate information fusion and graph contrast learning.
J. Biomed. Informatics
Siying Yang, Ping-an He, Pan Zeng, Yajie Meng, Zilong Zhang, Feifei Cui, Yuhua Yao, Jialiang Yang, Junlin Xu
2025 J jnl
ST-GCP: a graph convolutional network model with contrastive consistency and permutation for spatial transcriptomics.
Briefings Bioinform.
Yajie Meng, Yongkang Wang, Cheng Guo, Xianfang Tang, Zilong Zhang, Feifei Cui, Xiangzheng Fu, Quan Zou, Xu Lu, Junlin Xu
2025 J jnl
SWMA-UNet: Multi-Path Attention Network for Improved Medical Image Segmentation.
IEEE J. Biomed. Health Informatics
Xianfang Tang, Jincan Li, Qianrui Liu, Chang Zhou, Pan Zeng, Yajie Meng, Junlin Xu, Geng Tian, Jialiang Yang
2025 J jnl
ScLineageAtlas: a comprehensive single-cell genomics database for characterizing cellular clones in cancer.
Database J. Biol. Databases Curation
Jinyang Liu, Rui Hou, Junlin Xu, Tingting Hui, Haotian Tian, Yankun Liu, Meijun Zhang, Geng Tian, Jialiang Yang
2025 — conf
TransFVAE: A Transformer-Based Flow Variational Autoencoder Model for Molecular Graph Generation.
BIBM
Junlin Ding, Shuting Jin, Yajie Meng, Qiangguo Jin, Junlin Xu
2025 J jnl
m5U-HybridNet: Integrating an RNA Foundation Model with CNN Features for Accurate Prediction of 5-Methyluridine Modification Sites.
J. Chem. Inf. Model.
Xinyu Li, Zhenjie Luo, Jingwei Lv, Chao Yang, Shankai Yan, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Quan Zou, Feifei Cui
2024 J jnl
Drug repositioning based on tripartite cross-network embedding and graph convolutional network.
Expert Syst. Appl.
Pan Zeng, Bofei Zhang, Aohang Liu, Yajie Meng, Xianfang Tang, Jialiang Yang, Junlin Xu
2024 J jnl
Drug repositioning based on weighted local information augmented graph neural network.
Briefings Bioinform.
Yajie Meng, Yi Wang, Junlin Xu, Changcheng Lu, Xianfang Tang, Tao Peng, Ben-gong Zhang, Geng Tian, Jialiang Yang
2024 J jnl
scDMAE: A Generative Denoising Model Adopted Mask Strategy for scRNA-Seq Data Recovery.
IEEE J. Biomed. Health Informatics
Wei Liu, Youze Pan, Zhijie Teng, Junlin Xu
2023 J jnl
A Robust Oversampling Approach for Class Imbalance Problem With Small Disjuncts.
IEEE Trans. Knowl. Data Eng.
Yi Sun, Lijun Cai, Bo Liao, Wen Zhu, Junlin Xu
2023 J jnl
CapsNet-LDA: predicting lncRNA-disease associations using attention mechanism and capsule network based on multi-view data.
Briefings Bioinform.
Ze-Qun Zhang, Junlin Xu, Yanan Wu, Nian-Nian Liu, Ying-Long Wang, Ying Liang
2023 J jnl
Dimensionality reduction and visualization of single-cell RNA-seq data with an improved deep variational autoencoder.
Briefings Bioinform.
Jing Jiang, Junlin Xu, Yuansheng Liu, Bosheng Song, Xiulan Guo, Xiangxiang Zeng, Quan Zou
2023 — conf
Medical Image Segmentation Using Dual Branch Networks with Embedded Attention Mechanism.
BIBM
Shuaishuai Yang, Min Jin, Lian Wang, Changcheng Lu, Yajie Meng, Die Yan, Zhijian Huang, Junlin Xu
2022 J jnl
A weighted bilinear neural collaborative filtering approach for drug repositioning.
Briefings Bioinform.
Yajie Meng, Changcheng Lu, Min Jin, Junlin Xu, Xiangxiang Zeng, Jialiang Yang
2022 J jnl
Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data.
Comput. Biol. Medicine
Junlin Xu, Lingyu Cui, Jujuan Zhuang, Yajie Meng, Pingping Bing, Binsheng He, Geng Tian, Choi Kwok Pui, Taoyang Wu, Bing Wang, Jialiang Yang
2022 J jnl
Inferring Latent MicroRNA-Disease Associations on a Gene-Mediated Tripartite Heterogeneous Multiplexing Network.
IEEE ACM Trans. Comput. Biol. Bioinform.
Wen Li, Shu-Lin Wang, Junlin Xu, Ju Xiang
2021 J jnl
A Streamlined scRNA-Seq Data Analysis Framework Based on Improved Sparse Subspace Clustering.
IEEE Access
Jujuan Zhuang, Lingyu Cui, Tianqi Qu, Changjing Ren, Junlin Xu, Tianbao Li, Geng Tian, Jialiang Yang
2021 J jnl
CMF-Impute: an accurate imputation tool for single cell RNA-seq data.
Bioinform.
Junlin Xu, Lijun Cai, Bo Liao, Wen Zhu, Jialiang Yang
2021 J jnl
Drug repositioning based on similarity constrained probabilistic matrix factorization: COVID-19 as a case study.
Appl. Soft Comput.
Yajie Meng, Min Jin, Xianfang Tang, Junlin Xu
2021 J jnl
Drug repositioning based on the heterogeneous information fusion graph convolutional network.
Briefings Bioinform.
Lijun Cai, Changcheng Lu, Junlin Xu, Yajie Meng, Peng Wang, Xiangzheng Fu, Xiangxiang Zeng, Yansen Su
2021 J jnl
Uncovering Dominant Features in Short-term Power Load Forecasting Based on Multi-source Feature.
CoRR
Pan Zeng, Md. Fazla Elahe, Junlin Xu, Min Jin
2020 J jnl
CMF-Impute: an accurate imputation tool for single-cell RNA-seq data.
Bioinform.
Junlin Xu, Lijun Cai, Bo Liao, Wen Zhu, Jialiang Yang
2020 J jnl
Degree-Based Similarity Indexes for Identifying Potential miRNA-Disease Associations.
IEEE Access
Yajie Meng, Min Jin, Xianfang Tang, Junlin Xu
2020 J jnl
IMDAILM: Inferring miRNA-Disease Association by Integrating lncRNA and miRNA Data.
IEEE Access
Yuhua Yao, Binbin Ji, Sihong Shi, Junlin Xu, Xiaofang Xiao, Enchao Yu, Bo Liao, Jialiang Yang
2020 — conf
Identification of Human LncRNA-Disease Association by Fast Kernel Learning-Based Kronecker Regularized Least Squares.
ICIC (2)
Wen Li, Shulin Wang, Junlin Xu, Jialiang Yang
2020 J jnl
LRMCMDA: Predicting miRNA-Disease Association by Integrating Low-Rank Matrix Completion With miRNA and Disease Similarity Information.
IEEE Access
Junlin Xu, Wen Zhu, Lijun Cai, Bo Liao, Yajie Meng, Ju Xiang, Dawei Yuan, Geng Tian, Jialiang Yang
2019 J jnl
Community Detection and Visualization in Complex Network by the Density-Canopy-Kmeans Algorithm and MDS Embedding.
IEEE Access
Manzhi Li, Hongtao Wang, Haixia Long, Ju Xiang, Bo Wang, Junlin Xu, Jialiang Yang